Wall clock time and date at job start Sun Mar 29 2020 22:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42896 * 110.27426 * 57.91020 * 9 7 2 11 11 C 1.54597 * 110.30708 * 295.71637 * 9 7 2 12 12 C 1.54937 * 102.92462 * 219.12443 * 11 9 7 13 13 N 1.48539 * 103.22274 * 37.41216 * 12 11 9 14 14 C 1.46900 * 110.99941 * 200.27849 * 13 12 11 15 15 C 1.53001 * 109.47133 * 307.39783 * 14 13 12 16 16 C 1.53001 * 109.46741 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.46741 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47081 * 180.02562 * 17 16 15 19 19 F 1.39901 * 109.47606 * 180.02562 * 18 17 16 20 20 C 1.47901 * 105.82046 * 320.79537 * 13 12 11 21 21 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 22 22 H 0.96703 * 114.00355 * 300.70114 * 10 9 7 23 23 H 1.09004 * 110.72659 * 337.48631 * 11 9 7 24 24 H 1.09005 * 110.72577 * 100.77084 * 11 9 7 25 25 H 1.09000 * 110.66656 * 278.98674 * 12 11 9 26 26 H 1.08998 * 110.81602 * 155.91435 * 12 11 9 27 27 H 1.08999 * 109.46837 * 67.40287 * 14 13 12 28 28 H 1.09001 * 109.47046 * 187.39832 * 14 13 12 29 29 H 1.08997 * 109.46970 * 299.99754 * 15 14 13 30 30 H 1.09001 * 109.47115 * 60.00091 * 15 14 13 31 31 H 1.08991 * 109.47751 * 300.00255 * 16 15 14 32 32 H 1.09000 * 109.47056 * 60.00800 * 16 15 14 33 33 H 1.08999 * 109.47671 * 300.00159 * 17 16 15 34 34 H 1.09001 * 109.47115 * 60.00257 * 17 16 15 35 35 H 1.08999 * 109.47385 * 300.00611 * 18 17 16 36 36 H 1.09001 * 109.47064 * 60.00070 * 18 17 16 37 37 H 1.08997 * 109.91359 * 265.97067 * 20 13 12 38 38 H 1.09004 * 109.91438 * 144.67975 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.3820 -2.5692 -1.1380 11 6 0.4434 -2.6525 1.3035 12 6 0.6094 -4.1559 1.6391 13 7 2.0111 -4.4407 1.2383 14 6 2.2161 -5.8799 1.0270 15 6 1.7394 -6.6495 2.2605 16 6 1.9523 -8.1485 2.0401 17 6 1.4750 -8.9181 3.2733 18 6 1.6885 -10.4170 3.0532 19 9 1.2516 -11.1209 4.1806 20 6 2.2344 -3.6842 -0.0128 21 1 -0.4849 0.8401 0.0041 22 1 -0.2737 -1.8594 -1.1750 23 1 0.8672 -2.0319 2.0930 24 1 -0.6061 -2.4074 1.1403 25 1 -0.0872 -4.7592 1.0570 26 1 0.4710 -4.3323 2.7058 27 1 1.6482 -6.2036 0.1548 28 1 3.2759 -6.0758 0.8637 29 1 2.3074 -6.3258 3.1326 30 1 0.6796 -6.4536 2.4238 31 1 1.3842 -8.4719 1.1680 32 1 3.0120 -8.3447 1.8766 33 1 2.0428 -8.5948 4.1457 34 1 0.4153 -8.7218 3.4364 35 1 1.1210 -10.7407 2.1807 36 1 2.7484 -10.6130 2.8904 37 1 2.0390 -4.3239 -0.8734 38 1 3.2597 -3.3156 -0.0459 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:09 Heat of formation + Delta-G solvation = -140.622493 kcal Electronic energy + Delta-G solvation = -17998.149421 eV Core-core repulsion = 14981.028389 eV Total energy + Delta-G solvation = -3017.121031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 245.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.53177 -40.21450 -37.43637 -35.85850 -34.13201 -32.56161 -30.23160 -29.64946 -26.87514 -25.36799 -23.33410 -22.24856 -21.31961 -21.08581 -19.11317 -17.39416 -17.02998 -16.92523 -16.56481 -16.47312 -15.93489 -15.76375 -15.69820 -14.88790 -14.41911 -14.06275 -13.77117 -13.71145 -13.25294 -12.99910 -12.88531 -12.73235 -12.52490 -12.40933 -12.30093 -12.02917 -11.96323 -11.82380 -11.59444 -11.52626 -11.37141 -11.05510 -10.59776 -10.10289 -9.31155 -8.21515 -6.35217 1.42465 1.42842 1.50991 2.39625 2.97649 3.13294 3.62780 3.89174 3.92713 3.98552 4.13492 4.18377 4.27462 4.32413 4.41486 4.50724 4.54597 4.58763 4.64750 4.76167 4.84726 4.94922 4.97160 4.99702 5.10106 5.22795 5.25258 5.37432 5.42073 5.45920 5.59803 5.77043 5.99474 6.15825 6.28317 6.68876 7.34584 7.44611 8.84523 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.059494 B = 0.003784 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.526565 B = 7398.430949 C = 7433.843341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.225 3.775 10 O -0.603 6.603 11 C -0.113 4.113 12 C 0.045 3.955 13 N -0.521 5.521 14 C 0.045 3.955 15 C -0.111 4.111 16 C -0.108 4.108 17 C -0.149 4.149 18 C 0.056 3.944 19 F -0.240 7.240 20 C 0.061 3.939 21 H 0.269 0.731 22 H 0.378 0.622 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.027 0.973 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.034 0.966 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -15.275 4.618 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.595 4.595 8 H 0.072 0.928 9 C 0.185 3.815 10 O -0.412 6.412 11 C -0.152 4.152 12 C -0.083 4.083 13 N -0.245 5.245 14 C -0.083 4.083 15 C -0.149 4.149 16 C -0.146 4.146 17 C -0.187 4.187 18 C 0.001 3.999 19 F -0.222 7.222 20 C -0.067 4.067 21 H 0.079 0.921 22 H 0.228 0.772 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.106 0.894 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.087 -15.560 4.910 16.606 hybrid contribution -0.685 1.429 -0.572 1.684 sum 2.402 -14.131 4.338 14.976 Atomic orbital electron populations 1.69694 1.06843 1.28223 1.50835 1.25721 0.95883 1.02354 0.93409 0.85563 0.78418 0.78653 0.78683 1.19965 1.20538 1.19744 1.21955 0.93451 0.92203 1.51853 0.92776 1.19634 0.86747 0.92290 0.82793 1.86073 1.50769 1.54994 1.49392 1.22784 0.99132 0.94255 0.99050 1.23170 0.88915 0.95777 1.00396 1.64830 1.23140 1.08078 1.28486 1.22418 1.01548 0.86760 0.97572 1.21568 1.01289 0.94751 0.97308 1.21382 1.02543 0.93164 0.97503 1.22109 1.02743 0.94208 0.99602 1.22226 1.01991 0.90612 0.85065 1.92723 1.92043 1.81041 1.56379 1.22702 0.99270 0.94422 0.90309 0.92135 0.77199 0.93450 0.93363 0.94570 0.89423 0.95427 0.90094 0.91288 0.92310 0.91131 0.90290 0.90951 0.91380 0.89407 0.89061 0.94789 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.78 10.89 21.45 0.23 -49.55 16 2 C 0.03 1.41 5.27 84.66 0.45 1.85 16 3 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.56 -30.71 8.10 25.60 0.21 -30.50 16 8 H 0.05 2.98 7.34 -2.91 -0.02 2.96 16 9 C 0.23 11.50 0.99 -10.66 -0.01 11.48 16 10 O -0.60 -32.44 12.92 -148.98 -1.93 -34.36 16 11 C -0.11 -5.37 5.50 31.80 0.17 -5.20 16 12 C 0.04 1.71 5.11 86.65 0.44 2.16 16 13 N -0.52 -19.63 5.40 -883.02 -4.76 -24.40 16 14 C 0.04 1.29 5.03 86.30 0.43 1.72 16 15 C -0.11 -2.51 4.87 30.59 0.15 -2.36 16 16 C -0.11 -1.73 5.21 30.59 0.16 -1.57 16 17 C -0.15 -2.27 5.67 30.59 0.17 -2.10 16 18 C 0.06 0.76 7.55 71.98 0.54 1.30 16 19 F -0.24 -4.87 17.36 44.97 0.78 -4.09 16 20 C 0.06 2.70 6.17 86.44 0.53 3.23 16 21 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 22 H 0.38 20.75 7.07 -74.06 -0.52 20.22 16 23 H 0.05 2.39 7.86 -2.38 -0.02 2.37 16 24 H 0.05 2.38 8.06 -2.38 -0.02 2.36 16 25 H 0.04 1.35 8.00 -2.39 -0.02 1.33 16 26 H 0.09 2.94 7.65 -2.39 -0.02 2.92 16 27 H 0.03 0.81 7.81 -2.39 -0.02 0.80 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.39 6.79 -2.39 -0.02 1.38 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.03 1.48 7.39 -2.39 -0.02 1.47 16 38 H 0.07 3.22 7.39 -2.38 -0.02 3.20 16 Total: -1.00 -59.55 305.70 0.11 -59.44 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.50 Total: 28.06 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 3.25 Total: -19.98 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -4.53 Total: -73.95 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.93 Total: -34.36 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -59.55 0.11 -59.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.179 kcal (2) G-P(sol) polarization free energy of solvation -59.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds