Wall clock time and date at job start Sun Mar 29 2020 23:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 120.00340 * 2 1 4 4 H 1.08001 * 120.00405 * 202.22622 * 3 2 1 5 5 C 1.38816 * 119.99579 * 22.23066 * 3 2 1 6 6 N 1.31615 * 120.00119 * 11.35089 * 5 3 2 7 7 Si 1.86798 * 119.99649 * 191.35435 * 5 3 2 8 8 H 1.48506 * 109.47261 * 89.99940 * 7 5 3 9 9 H 1.48503 * 109.47356 * 209.99659 * 7 5 3 10 10 H 1.48505 * 109.47467 * 329.99884 * 7 5 3 11 11 C 1.46504 * 119.99764 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47136 * 90.00008 * 11 2 1 13 13 C 1.53000 * 109.46945 * 185.06619 * 12 11 2 14 14 H 1.09000 * 110.27330 * 52.62831 * 13 12 11 15 15 C 1.54608 * 110.36581 * 290.50853 * 13 12 11 16 16 C 1.54350 * 102.26942 * 214.67800 * 15 13 12 17 17 C 1.51370 * 105.25876 * 26.36740 * 16 15 13 18 18 C 1.38494 * 130.39044 * 162.76100 * 17 16 15 19 19 C 1.38104 * 120.21227 * 180.02562 * 18 17 16 20 20 C 1.38251 * 119.93573 * 359.97438 * 19 18 17 21 21 C 1.38097 * 119.93624 * 359.97438 * 20 19 18 22 22 C 1.38220 * 109.75788 * 342.75767 * 17 16 15 23 23 H 1.08995 * 109.46923 * 274.37492 * 1 2 3 24 24 H 1.09008 * 109.46737 * 34.36582 * 1 2 3 25 25 H 1.08998 * 109.47259 * 154.37040 * 1 2 3 26 26 H 0.97007 * 119.99593 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47275 * 329.99580 * 11 2 1 28 28 H 1.09008 * 109.46684 * 209.99663 * 11 2 1 29 29 H 1.08996 * 109.47586 * 65.06372 * 12 11 2 30 30 H 1.09005 * 109.47255 * 305.06483 * 12 11 2 31 31 H 1.08990 * 110.90481 * 96.48230 * 15 13 12 32 32 H 1.09001 * 110.84922 * 332.85138 * 15 13 12 33 33 H 1.09001 * 110.30178 * 267.38713 * 16 15 13 34 34 H 1.09005 * 110.30192 * 145.34032 * 16 15 13 35 35 H 1.08001 * 119.89362 * 359.97438 * 18 17 16 36 36 H 1.08006 * 120.02880 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.03308 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.89348 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1696 1.2207 -0.3538 5 6 1.5331 2.3434 0.4548 6 7 0.3824 2.2701 1.0895 7 14 2.3364 4.0049 0.1660 8 1 1.8697 4.5620 -1.1291 9 1 1.9660 4.9317 1.2656 10 1 3.8121 3.8421 0.1318 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.1044 -3.0940 -1.4457 14 1 2.5144 -3.7904 -0.8500 15 6 4.5481 -3.0097 -0.8987 16 6 5.2811 -4.0744 -1.7422 17 6 4.4973 -4.1684 -3.0337 18 6 4.8506 -4.7044 -4.2609 19 6 3.9577 -4.6771 -5.3142 20 6 2.7068 -4.1136 -5.1438 21 6 2.3523 -3.5796 -3.9205 22 6 3.2466 -3.6051 -2.8634 23 1 -0.3633 0.0784 1.0246 24 1 -0.3633 0.8484 -0.5801 25 1 -0.3634 -0.9265 -0.4445 26 1 -0.0487 3.0791 1.4070 27 1 1.6084 -2.0286 0.5130 28 1 3.1500 -1.1386 0.5133 29 1 3.1158 -0.9949 -1.9299 30 1 1.5062 -1.7530 -1.9826 31 1 4.5784 -3.2660 0.1602 32 1 4.9711 -2.0200 -1.0712 33 1 5.2765 -5.0346 -1.2262 34 1 6.3049 -3.7587 -1.9431 35 1 5.8278 -5.1444 -4.3949 36 1 4.2365 -5.0956 -6.2700 37 1 2.0075 -4.0911 -5.9665 38 1 1.3751 -3.1392 -3.7883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595308069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:31 Heat of formation + Delta-G solvation = 18.388765 kcal Electronic energy + Delta-G solvation = -17336.540840 eV Core-core repulsion = 14757.084279 eV Total energy + Delta-G solvation = -2579.456561 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09510 -37.97232 -36.62342 -33.98325 -32.60404 -30.93186 -29.60556 -27.98606 -27.31306 -24.55192 -23.51823 -22.36350 -21.65247 -20.79032 -18.68446 -17.41640 -16.88294 -16.19852 -16.02920 -15.81079 -15.52323 -15.16854 -14.56041 -14.55071 -13.97359 -13.84065 -13.52640 -13.18757 -13.07895 -12.82022 -12.69860 -12.38812 -12.36823 -12.15613 -12.01024 -11.89757 -11.78777 -11.62827 -11.47899 -11.26296 -10.62437 -9.67587 -9.37331 -8.75139 -7.81683 -5.30200 0.49946 0.52337 1.45334 1.46803 1.55622 2.51092 2.89077 3.31261 3.55423 3.64671 3.74316 4.07887 4.18036 4.22304 4.26037 4.42040 4.45860 4.64385 4.65238 4.72926 4.80656 4.85824 4.92030 4.96747 4.98452 5.10566 5.21949 5.26229 5.30442 5.36200 5.45707 5.55467 5.61510 5.63548 5.65954 5.70190 5.82815 6.17421 6.34080 7.16521 7.89549 8.33176 9.21827 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.004914 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.504113 B = 5696.903783 C = 5774.062654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.625 5.625 3 C -0.259 4.259 4 H 0.068 0.932 5 C -0.056 4.056 6 N -0.942 5.942 7 Si 0.968 3.032 8 H -0.287 1.287 9 H -0.293 1.293 10 H -0.268 1.268 11 C 0.152 3.848 12 C -0.107 4.107 13 C -0.045 4.045 14 H 0.088 0.912 15 C -0.115 4.115 16 C -0.076 4.076 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.127 4.127 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.105 4.105 23 H 0.003 0.997 24 H 0.015 0.985 25 H 0.026 0.974 26 H 0.247 0.753 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.561 -15.777 -9.789 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.348 5.348 3 C -0.389 4.389 4 H 0.086 0.914 5 C -0.251 4.251 6 N -0.590 5.590 7 Si 0.797 3.203 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.192 1.192 11 C 0.026 3.974 12 C -0.147 4.147 13 C -0.064 4.064 14 H 0.106 0.894 15 C -0.152 4.152 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.135 4.135 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.105 4.105 23 H 0.021 0.979 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.469 -15.655 -9.701 20.271 hybrid contribution -0.234 1.313 -0.016 1.334 sum 8.235 -14.342 -9.717 19.181 Atomic orbital electron populations 1.20503 0.83014 0.95671 0.97405 1.44208 1.02117 1.02000 1.86494 1.19520 0.97851 0.86817 1.34719 0.91383 1.25789 0.98505 1.01848 0.98914 1.70243 1.19321 1.27363 1.42044 0.85245 0.78467 0.79823 0.76814 1.21451 1.21935 1.19239 1.20919 0.95458 0.86436 0.94543 1.21986 0.99098 0.94903 0.98756 1.20744 0.97663 0.95863 0.92101 0.89392 1.22433 0.93390 0.99090 1.00292 1.21066 0.98791 0.99939 0.91467 1.20946 0.95580 0.98572 0.96097 1.20936 1.00714 1.00155 0.91736 1.21364 0.93585 0.99869 0.99658 1.21312 0.97724 0.98773 0.96971 1.20859 0.99596 1.00628 0.93281 1.20807 0.95180 0.98805 0.95681 0.97863 0.96620 0.95529 0.94334 0.93547 0.93549 0.94319 0.93748 0.89290 0.92049 0.88841 0.89736 0.84194 0.83417 0.84239 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.30 8.96 127.77 1.15 10.45 16 2 N -0.62 -32.69 2.93 -726.91 -2.13 -34.82 16 3 C -0.26 -14.71 9.67 84.03 0.81 -13.89 16 4 H 0.07 3.77 7.85 -2.91 -0.02 3.74 16 5 C -0.06 -3.24 5.13 84.86 0.44 -2.80 16 6 N -0.94 -57.43 10.58 21.65 0.23 -57.20 16 7 Si 0.97 46.25 29.57 68.60 2.03 48.28 16 8 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 9 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 C 0.15 6.30 5.45 86.38 0.47 6.77 16 12 C -0.11 -3.88 4.86 30.59 0.15 -3.73 16 13 C -0.04 -1.28 2.87 -10.78 -0.03 -1.31 16 14 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 15 C -0.11 -2.84 5.98 31.60 0.19 -2.65 16 16 C -0.08 -1.57 6.76 30.52 0.21 -1.36 16 17 C -0.11 -2.73 6.14 -19.59 -0.12 -2.85 16 18 C -0.12 -2.46 10.04 22.30 0.22 -2.23 16 19 C -0.13 -2.52 10.05 22.24 0.22 -2.30 16 20 C -0.13 -2.91 10.05 22.24 0.22 -2.69 16 21 C -0.13 -3.41 9.69 22.30 0.22 -3.20 16 22 C -0.10 -2.93 5.61 -19.59 -0.11 -3.04 16 23 H 0.00 0.17 7.41 -2.39 -0.02 0.16 16 24 H 0.01 0.86 7.19 -2.38 -0.02 0.84 16 25 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 26 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 27 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 28 H 0.05 1.90 7.64 -2.38 -0.02 1.89 16 29 H 0.04 1.54 7.99 -2.39 -0.02 1.52 16 30 H 0.04 1.67 7.59 -2.38 -0.02 1.65 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.70 7.82 -2.39 -0.02 1.68 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.11 3.09 7.67 -2.91 -0.02 3.07 16 Total: -1.00 -66.06 307.97 5.17 -60.89 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.01 Total: 7.70 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.03 Total: -24.85 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -1.90 Total: -92.02 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -66.06 5.17 -60.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595308069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.276 kcal (2) G-P(sol) polarization free energy of solvation -66.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds