Wall clock time and date at job start Sun Mar 29 2020 22:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46871 * 2 1 4 4 C 1.50692 * 109.47341 * 119.99865 * 2 1 3 5 5 C 1.38263 * 120.14550 * 300.00314 * 4 2 1 6 6 C 1.37907 * 119.82800 * 180.19377 * 5 4 2 7 7 C 1.38979 * 120.58664 * 359.96050 * 6 5 4 8 8 C 1.37680 * 119.51391 * 359.67684 * 7 6 5 9 9 C 1.37956 * 120.13980 * 119.98067 * 4 2 1 10 10 C 1.50812 * 122.35272 * 180.62292 * 8 7 6 11 11 N 1.46679 * 109.67720 * 348.95995 * 10 8 7 12 12 C 1.36937 * 121.35134 * 224.28505 * 11 10 8 13 13 H 1.07997 * 120.00306 * 155.45688 * 12 11 10 14 14 C 1.38817 * 119.99907 * 335.45083 * 12 11 10 15 15 N 1.31621 * 119.99640 * 344.30654 * 14 12 11 16 16 Si 1.86799 * 120.00123 * 164.30623 * 14 12 11 17 17 H 1.48499 * 109.47111 * 60.00077 * 16 14 12 18 18 H 1.48496 * 109.46949 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47187 * 300.00161 * 16 14 12 20 20 C 1.47244 * 117.30336 * 44.30412 * 11 10 8 21 21 C 1.50603 * 117.61746 * 179.57373 * 7 6 5 22 22 H 1.09005 * 109.47112 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47406 * 299.99971 * 1 2 3 24 24 H 1.09002 * 109.47192 * 60.00054 * 1 2 3 25 25 H 1.09003 * 109.47015 * 240.00327 * 2 1 3 26 26 H 1.09003 * 109.47279 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47168 * 299.99960 * 3 2 1 28 28 H 1.08999 * 109.47082 * 59.99830 * 3 2 1 29 29 H 1.08003 * 120.08518 * 0.16815 * 5 4 2 30 30 H 1.08004 * 119.70860 * 179.97438 * 6 5 4 31 31 H 1.08003 * 119.74634 * 359.96616 * 9 4 2 32 32 H 1.09011 * 109.43247 * 228.90013 * 10 8 7 33 33 H 1.08995 * 109.43863 * 109.02620 * 10 8 7 34 34 H 0.97001 * 119.99883 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.77744 * 55.24477 * 20 11 10 36 36 H 1.08997 * 109.78130 * 176.05999 * 20 11 10 37 37 H 1.09002 * 109.19748 * 40.03607 * 21 7 6 38 38 H 1.08998 * 109.15856 * 280.72282 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.7001 -0.2406 2.4876 6 6 2.1668 -0.8934 3.6092 7 6 2.9689 -2.0219 3.4882 8 6 3.2926 -2.4928 2.2356 9 6 2.8253 -1.8325 1.1072 10 6 4.1463 -3.7189 2.0301 11 7 4.7517 -4.1185 3.3049 12 6 6.0705 -4.4784 3.3856 13 1 6.5992 -4.3858 4.3227 14 6 6.7278 -4.9624 2.2628 15 7 6.0360 -5.3670 1.2187 16 14 8.5939 -5.0396 2.2336 17 1 9.0703 -5.9159 3.3338 18 1 9.0463 -5.5897 0.9307 19 1 9.1487 -3.6738 2.4132 20 6 3.8839 -4.1174 4.4945 21 6 3.4492 -2.6763 4.7567 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.0772 0.6356 2.5911 30 1 1.9064 -0.5245 4.5904 31 1 3.0844 -2.2004 0.1253 32 1 4.9329 -3.4964 1.3089 33 1 3.5276 -4.5325 1.6516 34 1 6.4952 -5.7049 0.4339 35 1 3.0078 -4.7396 4.3124 36 1 4.4356 -4.4983 5.3539 37 1 2.6422 -2.6730 5.4895 38 1 4.2945 -2.1131 5.1519 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595656567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:14 Heat of formation + Delta-G solvation = 25.061900 kcal Electronic energy + Delta-G solvation = -17722.105711 eV Core-core repulsion = 15142.938519 eV Total energy + Delta-G solvation = -2579.167192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45500 -36.66779 -34.50101 -32.31509 -31.35419 -29.56343 -28.09476 -27.07479 -25.45483 -23.22366 -22.47862 -21.53448 -20.41135 -18.35681 -16.64982 -15.86381 -15.08929 -14.75470 -14.40199 -13.87659 -13.73790 -13.61195 -13.31752 -12.98813 -12.72453 -12.45633 -12.21557 -11.90560 -11.71079 -11.44860 -11.18616 -11.01852 -10.81777 -10.72300 -10.66998 -10.46909 -10.30677 -10.03794 -9.86845 -9.62054 -8.63360 -8.07635 -7.68044 -6.74345 -5.80366 -3.19833 1.92579 2.02304 3.39046 3.44567 3.46080 4.30607 4.48936 4.89015 4.98410 5.31520 5.36183 5.40474 5.48445 5.54436 5.57791 5.65275 5.67946 5.85013 5.86328 5.95826 6.02584 6.09603 6.21676 6.23979 6.27318 6.31358 6.41044 6.63478 6.67257 6.74300 6.90822 7.04578 7.10409 7.24693 7.29793 7.58997 7.72322 7.78570 8.38326 9.18919 9.81527 10.40088 11.30107 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.027508 B = 0.006354 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.629614 B = 4405.363971 C = 4981.361525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C -0.142 4.142 4 C -0.089 4.089 5 C -0.133 4.133 6 C -0.127 4.127 7 C -0.071 4.071 8 C -0.073 4.073 9 C -0.120 4.120 10 C 0.206 3.794 11 N -0.594 5.594 12 C -0.248 4.248 13 H 0.069 0.931 14 C 0.000 4.000 15 N -0.909 5.909 16 Si 0.905 3.095 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.142 3.858 21 C -0.097 4.097 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.255 0.745 35 H 0.026 0.974 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 10.112 0.035 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.089 4.089 5 C -0.151 4.151 6 C -0.145 4.145 7 C -0.072 4.072 8 C -0.075 4.075 9 C -0.139 4.139 10 C 0.080 3.920 11 N -0.316 5.316 12 C -0.378 4.378 13 H 0.087 0.913 14 C -0.198 4.198 15 N -0.554 5.554 16 Si 0.735 3.265 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.016 3.984 21 C -0.136 4.136 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.299 10.009 -0.116 13.662 hybrid contribution 0.938 0.014 -0.089 0.942 sum -8.361 10.023 -0.205 13.054 Atomic orbital electron populations 1.21832 0.94848 1.01854 1.01304 1.20057 0.95505 0.95769 0.95920 1.21836 1.01343 0.95425 1.01286 1.19610 0.98815 0.96291 0.94159 1.20615 1.02012 1.00292 0.92176 1.21100 0.99269 0.96274 0.97861 1.19561 0.97212 0.95433 0.94961 1.20974 0.96508 0.98085 0.91894 1.21002 0.98754 0.95666 0.98464 1.19743 0.94217 0.88577 0.89417 1.43990 1.07343 1.77196 1.03055 1.19138 0.85139 1.36427 0.97053 0.91346 1.25005 0.98300 0.98643 0.97818 1.70000 1.34055 1.45154 1.06158 0.86319 0.85454 0.77854 0.76874 1.20851 1.21576 1.21052 1.20904 0.93894 0.92345 0.91294 1.20967 0.99591 0.99344 0.93713 0.92588 0.92695 0.92894 0.90748 0.92546 0.92888 0.92701 0.87288 0.87233 0.86630 0.88695 0.94335 0.93494 0.95625 0.92174 0.92327 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.01 37.16 0.33 -1.23 16 2 C -0.05 -0.69 3.10 -91.77 -0.28 -0.97 16 3 C -0.14 -1.61 9.01 37.16 0.33 -1.27 16 4 C -0.09 -1.41 4.77 -104.72 -0.50 -1.91 16 5 C -0.13 -2.05 8.72 -39.69 -0.35 -2.40 16 6 C -0.13 -2.12 9.59 -39.43 -0.38 -2.49 16 7 C -0.07 -1.39 5.76 -104.60 -0.60 -1.99 16 8 C -0.07 -1.55 5.82 -104.55 -0.61 -2.16 16 9 C -0.12 -2.25 9.26 -39.46 -0.37 -2.61 16 10 C 0.21 5.10 4.85 -5.04 -0.02 5.07 16 11 N -0.59 -15.25 2.97 -173.93 -0.52 -15.77 16 12 C -0.25 -6.88 9.70 -15.06 -0.15 -7.03 16 13 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 14 C 0.00 0.01 4.99 -17.43 -0.09 -0.08 16 15 N -0.91 -26.37 11.09 55.49 0.62 -25.75 16 16 Si 0.91 21.83 29.58 -169.99 -5.03 16.80 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.14 3.04 6.52 -3.74 -0.02 3.02 16 21 C -0.10 -1.80 5.86 -28.04 -0.16 -1.97 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.58 7.40 -51.93 -0.38 0.20 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.94 7.88 -51.93 -0.41 0.54 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.60 7.41 -51.93 -0.38 0.21 16 29 H 0.11 1.42 7.14 -52.48 -0.37 1.04 16 30 H 0.11 1.56 8.05 -52.48 -0.42 1.14 16 31 H 0.12 2.06 7.94 -52.48 -0.42 1.65 16 32 H 0.10 2.59 6.35 -51.92 -0.33 2.26 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 1.23 7.96 -51.93 -0.41 0.81 16 37 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -29.39 303.33 -9.28 -38.68 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.06 Total: -0.51 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.86 Total: -18.02 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.10 Total: -41.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.39 -9.28 -38.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595656567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.738 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds