Wall clock time and date at job start Sun Mar 29 2020 23:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46920 * 2 1 4 4 C 1.36940 * 120.00274 * 96.89212 * 3 2 1 5 5 H 1.08000 * 120.00118 * 159.56637 * 4 3 2 6 6 C 1.38813 * 119.99464 * 339.56550 * 4 3 2 7 7 N 1.31609 * 120.00638 * 356.77410 * 6 4 3 8 8 Si 1.86802 * 119.99593 * 176.76874 * 6 4 3 9 9 H 1.48505 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47088 * 119.99740 * 8 6 4 11 11 H 1.48499 * 109.47413 * 240.00286 * 8 6 4 12 12 C 1.46497 * 119.99748 * 276.89048 * 3 2 1 13 13 C 1.50700 * 109.47386 * 271.22472 * 12 3 2 14 14 C 1.38261 * 119.99619 * 3.77129 * 13 12 3 15 15 C 1.38221 * 120.00060 * 179.97438 * 14 13 12 16 16 C 1.38257 * 119.99651 * 359.81520 * 15 14 13 17 17 C 1.38218 * 119.99914 * 0.44014 * 16 15 14 18 18 C 1.38208 * 120.00735 * 183.79611 * 13 12 3 19 19 C 1.50707 * 119.99408 * 359.97438 * 18 13 12 20 20 C 1.53001 * 117.49610 * 183.60165 * 19 18 13 21 21 C 1.53000 * 117.49861 * 114.98012 * 19 18 13 22 22 H 1.08996 * 109.47337 * 69.04640 * 1 2 3 23 23 H 1.09009 * 109.46934 * 189.04466 * 1 2 3 24 24 H 1.08999 * 109.47350 * 309.04590 * 1 2 3 25 25 H 1.08995 * 109.47211 * 240.00015 * 2 1 3 26 26 H 1.09004 * 109.47136 * 119.99471 * 2 1 3 27 27 H 0.96996 * 120.00332 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47030 * 151.22715 * 12 3 2 29 29 H 1.09000 * 109.47596 * 31.22543 * 12 3 2 30 30 H 1.07998 * 120.00601 * 359.97438 * 14 13 12 31 31 H 1.07994 * 119.99806 * 179.97438 * 15 14 13 32 32 H 1.07994 * 119.99869 * 180.23472 * 16 15 14 33 33 H 1.08002 * 119.99918 * 179.78949 * 17 16 15 34 34 H 1.08995 * 115.54885 * 329.30962 * 19 18 13 35 35 H 1.09000 * 117.50223 * 359.97438 * 20 19 18 36 36 H 1.09006 * 117.49566 * 145.02088 * 20 19 18 37 37 H 1.08996 * 117.49898 * 214.97851 * 21 19 18 38 38 H 1.09008 * 117.49811 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3807 1.9794 1.1773 5 1 3.0326 2.8404 1.1673 6 6 1.9100 1.4790 2.3836 7 7 1.0654 0.4698 2.3928 8 14 2.4757 2.2383 3.9939 9 1 3.4179 3.3510 3.7125 10 1 1.2997 2.7615 4.7345 11 1 3.1586 1.2063 4.8148 12 6 2.1189 2.1225 -1.2596 13 6 3.4725 1.8825 -1.8770 14 6 4.3570 1.0017 -1.2826 15 6 5.5984 0.7811 -1.8491 16 6 5.9539 1.4384 -3.0123 17 6 5.0717 2.3229 -3.6036 18 6 3.8299 2.5432 -3.0371 19 6 2.8657 3.5032 -3.6851 20 6 3.2861 4.1389 -5.0117 21 6 3.2642 4.9796 -3.7336 22 1 -0.3634 0.3675 -0.9597 23 1 -0.3633 -1.0150 0.1616 24 1 -0.3634 0.6474 0.7981 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.7368 0.1200 3.2357 28 1 1.9918 3.1875 -1.0655 29 1 1.3418 1.7827 -1.9443 30 1 4.0782 0.4860 -0.3756 31 1 6.2894 0.0934 -1.3845 32 1 6.9223 1.2632 -3.4570 33 1 5.3507 2.8389 -4.5104 34 1 1.8093 3.2712 -3.5501 35 1 4.2602 3.8631 -5.4157 36 1 2.5060 4.3252 -5.7501 37 1 2.4699 5.7189 -3.6310 38 1 4.2240 5.2565 -3.2972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611264098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:17 Heat of formation + Delta-G solvation = 76.533603 kcal Electronic energy + Delta-G solvation = -17852.950624 eV Core-core repulsion = 15276.015412 eV Total energy + Delta-G solvation = -2576.935211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.39472 -36.58069 -35.75297 -32.09240 -30.42888 -29.94314 -28.71643 -25.58147 -23.65274 -23.13754 -22.30355 -21.06672 -19.95477 -19.53849 -16.79462 -16.38461 -15.43281 -14.83040 -14.50397 -13.97812 -13.73209 -13.58496 -13.18811 -12.92639 -12.51246 -11.90311 -11.87615 -11.45557 -11.41920 -11.22416 -10.88699 -10.73259 -10.63849 -10.55539 -10.42311 -10.21611 -10.04360 -9.92320 -9.64141 -9.44138 -8.37287 -8.15550 -7.88733 -6.73500 -5.66481 -3.16807 1.85316 2.01461 3.38635 3.46549 3.48080 3.93967 4.43921 4.50489 4.82841 5.05172 5.18082 5.25825 5.39532 5.46730 5.52808 5.63750 5.73687 5.83025 5.92987 6.04964 6.14451 6.20216 6.36749 6.47312 6.52540 6.59714 6.67779 6.77369 6.99165 7.01175 7.11467 7.16317 7.24398 7.44681 7.64791 7.75170 7.87847 8.13930 8.48589 9.31229 9.89995 10.37079 11.32781 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.006804 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.194313 B = 4114.404406 C = 4223.579713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 N -0.596 5.596 4 C -0.242 4.242 5 H 0.069 0.931 6 C -0.004 4.004 7 N -0.906 5.906 8 Si 0.905 3.095 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.291 1.291 12 C 0.182 3.818 13 C -0.081 4.081 14 C -0.087 4.087 15 C -0.133 4.133 16 C -0.137 4.137 17 C -0.131 4.131 18 C -0.065 4.065 19 C -0.107 4.107 20 C -0.183 4.183 21 C -0.170 4.170 22 H 0.002 0.998 23 H 0.022 0.978 24 H 0.082 0.918 25 H -0.003 1.003 26 H 0.095 0.905 27 H 0.249 0.751 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.140 0.860 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 3.356 -11.289 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.043 3.957 3 N -0.317 5.317 4 C -0.371 4.371 5 H 0.087 0.913 6 C -0.200 4.200 7 N -0.553 5.553 8 Si 0.736 3.264 9 H -0.205 1.205 10 H -0.218 1.218 11 H -0.218 1.218 12 C 0.054 3.946 13 C -0.083 4.083 14 C -0.105 4.105 15 C -0.151 4.151 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.065 4.065 19 C -0.125 4.125 20 C -0.220 4.220 21 C -0.207 4.207 22 H 0.021 0.979 23 H 0.041 0.959 24 H 0.101 0.899 25 H 0.015 0.985 26 H 0.113 0.887 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.158 0.842 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.777 3.279 -11.114 12.534 hybrid contribution 0.290 0.349 0.858 0.971 sum 5.067 3.628 -10.256 12.001 Atomic orbital electron populations 1.22248 0.99401 0.99440 0.98606 1.20812 0.92380 0.84476 0.98054 1.44072 1.75626 1.10456 1.01520 1.19321 1.22476 1.11507 0.83794 0.91300 1.24965 0.98099 0.98999 0.97946 1.70128 1.34105 1.26863 1.24227 0.86161 0.77747 0.78523 0.84019 1.20530 1.21813 1.21810 1.19717 0.90315 0.96330 0.88218 1.21122 0.99259 0.94689 0.93269 1.21368 0.92273 0.96961 0.99897 1.21173 0.97201 1.00450 0.96325 1.20918 0.99096 0.98596 0.96930 1.20828 0.94110 0.99876 1.00091 1.18935 0.94051 0.97973 0.95585 1.20988 0.99070 0.93178 0.99266 1.23024 1.02944 1.04952 0.91065 1.22959 1.03159 0.93355 1.01183 0.97940 0.95927 0.89882 0.98501 0.88692 0.93976 0.92100 0.93229 0.84203 0.87018 0.87253 0.87032 0.86960 0.88699 0.88888 0.88730 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.45 37.16 0.35 -2.87 16 2 C 0.17 4.04 4.77 -4.04 -0.02 4.02 16 3 N -0.60 -14.45 1.35 -174.61 -0.24 -14.69 16 4 C -0.24 -6.41 9.39 -15.06 -0.14 -6.55 16 5 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 6 C 0.00 -0.10 5.27 -17.43 -0.09 -0.19 16 7 N -0.91 -24.96 7.99 55.49 0.44 -24.52 16 8 Si 0.90 21.59 29.55 -169.99 -5.02 16.56 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 C 0.18 3.80 4.82 -5.20 -0.03 3.77 16 13 C -0.08 -1.56 5.88 -104.62 -0.61 -2.17 16 14 C -0.09 -1.72 9.17 -39.58 -0.36 -2.08 16 15 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 16 C -0.14 -2.10 10.05 -39.58 -0.40 -2.50 16 17 C -0.13 -2.01 9.36 -39.58 -0.37 -2.38 16 18 C -0.06 -1.09 5.59 -104.63 -0.59 -1.67 16 19 C -0.11 -1.53 5.39 -91.77 -0.49 -2.02 16 20 C -0.18 -2.10 9.87 -26.73 -0.26 -2.37 16 21 C -0.17 -2.11 10.21 -26.73 -0.27 -2.38 16 22 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 23 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.08 2.19 6.49 -51.93 -0.34 1.85 16 25 H 0.00 -0.07 8.12 -51.93 -0.42 -0.49 16 26 H 0.10 2.54 5.96 -51.93 -0.31 2.23 16 27 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.06 1.28 7.94 -51.93 -0.41 0.87 16 29 H 0.05 1.00 7.79 -51.93 -0.40 0.59 16 30 H 0.14 3.10 6.17 -52.49 -0.32 2.77 16 31 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.11 1.44 5.94 -52.49 -0.31 1.13 16 34 H 0.11 1.61 7.25 -51.93 -0.38 1.23 16 35 H 0.09 1.03 6.09 -51.93 -0.32 0.71 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 LS Contribution 304.19 15.07 4.58 4.58 Total: -1.00 -27.43 304.19 -9.64 -37.07 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.72 Total: 3.05 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -3.69 Total: -22.06 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.21 Total: -39.21 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.43 -9.64 -37.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611264098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.606 kcal (2) G-P(sol) polarization free energy of solvation -27.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds