Wall clock time and date at job start Sun Mar 29 2020 23:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46920 * 2 1 4 4 C 1.36940 * 120.00274 * 96.89212 * 3 2 1 5 5 H 1.08000 * 120.00118 * 159.56637 * 4 3 2 6 6 C 1.38813 * 119.99464 * 339.56550 * 4 3 2 7 7 N 1.31609 * 120.00638 * 356.77410 * 6 4 3 8 8 Si 1.86802 * 119.99593 * 176.76874 * 6 4 3 9 9 H 1.48505 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47088 * 119.99740 * 8 6 4 11 11 H 1.48499 * 109.47413 * 240.00286 * 8 6 4 12 12 C 1.46497 * 119.99748 * 276.89048 * 3 2 1 13 13 C 1.50700 * 109.47386 * 271.22472 * 12 3 2 14 14 C 1.38261 * 119.99619 * 3.77129 * 13 12 3 15 15 C 1.38221 * 120.00060 * 179.97438 * 14 13 12 16 16 C 1.38257 * 119.99651 * 359.81520 * 15 14 13 17 17 C 1.38218 * 119.99914 * 0.44014 * 16 15 14 18 18 C 1.38208 * 120.00735 * 183.79611 * 13 12 3 19 19 C 1.50707 * 119.99408 * 359.97438 * 18 13 12 20 20 C 1.53001 * 117.49610 * 183.60165 * 19 18 13 21 21 C 1.53000 * 117.49861 * 114.98012 * 19 18 13 22 22 H 1.08996 * 109.47337 * 69.04640 * 1 2 3 23 23 H 1.09009 * 109.46934 * 189.04466 * 1 2 3 24 24 H 1.08999 * 109.47350 * 309.04590 * 1 2 3 25 25 H 1.08995 * 109.47211 * 240.00015 * 2 1 3 26 26 H 1.09004 * 109.47136 * 119.99471 * 2 1 3 27 27 H 0.96996 * 120.00332 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47030 * 151.22715 * 12 3 2 29 29 H 1.09000 * 109.47596 * 31.22543 * 12 3 2 30 30 H 1.07998 * 120.00601 * 359.97438 * 14 13 12 31 31 H 1.07994 * 119.99806 * 179.97438 * 15 14 13 32 32 H 1.07994 * 119.99869 * 180.23472 * 16 15 14 33 33 H 1.08002 * 119.99918 * 179.78949 * 17 16 15 34 34 H 1.08995 * 115.54885 * 329.30962 * 19 18 13 35 35 H 1.09000 * 117.50223 * 359.97438 * 20 19 18 36 36 H 1.09006 * 117.49566 * 145.02088 * 20 19 18 37 37 H 1.08996 * 117.49898 * 214.97851 * 21 19 18 38 38 H 1.09008 * 117.49811 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3807 1.9794 1.1773 5 1 3.0326 2.8404 1.1673 6 6 1.9100 1.4790 2.3836 7 7 1.0654 0.4698 2.3928 8 14 2.4757 2.2383 3.9939 9 1 3.4179 3.3510 3.7125 10 1 1.2997 2.7615 4.7345 11 1 3.1586 1.2063 4.8148 12 6 2.1189 2.1225 -1.2596 13 6 3.4725 1.8825 -1.8770 14 6 4.3570 1.0017 -1.2826 15 6 5.5984 0.7811 -1.8491 16 6 5.9539 1.4384 -3.0123 17 6 5.0717 2.3229 -3.6036 18 6 3.8299 2.5432 -3.0371 19 6 2.8657 3.5032 -3.6851 20 6 3.2861 4.1389 -5.0117 21 6 3.2642 4.9796 -3.7336 22 1 -0.3634 0.3675 -0.9597 23 1 -0.3633 -1.0150 0.1616 24 1 -0.3634 0.6474 0.7981 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.7368 0.1200 3.2357 28 1 1.9918 3.1875 -1.0655 29 1 1.3418 1.7827 -1.9443 30 1 4.0782 0.4860 -0.3756 31 1 6.2894 0.0934 -1.3845 32 1 6.9223 1.2632 -3.4570 33 1 5.3507 2.8389 -4.5104 34 1 1.8093 3.2712 -3.5501 35 1 4.2602 3.8631 -5.4157 36 1 2.5060 4.3252 -5.7501 37 1 2.4699 5.7189 -3.6310 38 1 4.2240 5.2565 -3.2972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611264098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:17 Heat of formation + Delta-G solvation = 65.630439 kcal Electronic energy + Delta-G solvation = -17853.423420 eV Core-core repulsion = 15276.015412 eV Total energy + Delta-G solvation = -2577.408008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68610 -38.00734 -37.25843 -33.84386 -32.22274 -31.25811 -30.50690 -27.31958 -25.28485 -24.58272 -23.30137 -22.67701 -21.51658 -20.85900 -18.67360 -17.66706 -17.13002 -16.27859 -15.80183 -15.61055 -15.40274 -14.89739 -14.80368 -14.40673 -14.02522 -13.76356 -13.28128 -13.02906 -12.97880 -12.79294 -12.55377 -12.39672 -12.32428 -11.96076 -11.84845 -11.70674 -11.59797 -11.42014 -11.40789 -11.11938 -10.40245 -9.49028 -9.20519 -8.69670 -7.72470 -5.22898 0.55484 0.67269 1.46233 1.48573 1.57247 2.52751 2.82547 3.24092 3.36141 3.69618 3.77331 4.03721 4.13475 4.22005 4.26989 4.34581 4.47169 4.67398 4.76239 4.77556 4.83172 4.84656 4.96772 5.04415 5.08457 5.20033 5.25138 5.27445 5.30421 5.32433 5.39420 5.62260 5.72867 5.81835 5.84166 6.04414 6.15098 6.29908 6.45618 7.25839 7.93890 8.36512 9.25137 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.006804 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.194313 B = 4114.404406 C = 4223.579713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.176 3.824 3 N -0.606 5.606 4 C -0.246 4.246 5 H 0.061 0.939 6 C -0.050 4.050 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.293 1.293 12 C 0.189 3.811 13 C -0.106 4.106 14 C -0.112 4.112 15 C -0.142 4.142 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.063 4.063 19 C -0.136 4.136 20 C -0.157 4.157 21 C -0.168 4.168 22 H 0.017 0.983 23 H 0.032 0.968 24 H 0.052 0.948 25 H 0.007 0.993 26 H 0.066 0.934 27 H 0.245 0.755 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 4.417 -13.505 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 N -0.327 5.327 4 C -0.376 4.376 5 H 0.079 0.921 6 C -0.245 4.245 7 N -0.572 5.572 8 Si 0.793 3.207 9 H -0.200 1.200 10 H -0.220 1.220 11 H -0.220 1.220 12 C 0.063 3.937 13 C -0.109 4.109 14 C -0.130 4.130 15 C -0.160 4.160 16 C -0.145 4.145 17 C -0.147 4.147 18 C -0.064 4.064 19 C -0.155 4.155 20 C -0.194 4.194 21 C -0.205 4.205 22 H 0.036 0.964 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.025 0.975 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.107 4.352 -13.355 15.316 hybrid contribution -0.064 0.034 1.449 1.450 sum 6.043 4.385 -11.906 14.054 Atomic orbital electron populations 1.22051 0.98720 0.99403 0.98173 1.20606 0.92770 0.84541 0.97010 1.44132 1.75812 1.10653 1.02132 1.19421 1.22103 1.11125 0.84953 0.92130 1.25577 0.98714 0.99741 1.00434 1.70295 1.34917 1.27688 1.24279 0.85253 0.77109 0.77699 0.80657 1.20038 1.22018 1.22005 1.19680 0.91815 0.95348 0.86855 1.20909 0.98403 0.96568 0.95013 1.21185 0.94145 0.98129 0.99554 1.21356 0.96300 1.01130 0.97200 1.21330 1.00414 0.97115 0.95689 1.21220 0.93200 0.99466 1.00806 1.19170 0.95226 0.97509 0.94455 1.20986 0.98266 0.94005 1.02202 1.23143 1.03927 1.02124 0.90183 1.23027 1.03276 0.92266 1.01911 0.96415 0.94887 0.92862 0.97499 0.91623 0.94539 0.92931 0.92843 0.87711 0.85496 0.83658 0.83809 0.87744 0.87462 0.86998 0.87663 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 9.45 71.98 0.68 -5.21 16 2 C 0.18 8.74 4.77 86.38 0.41 9.15 16 3 N -0.61 -30.37 1.35 -706.35 -0.95 -31.32 16 4 C -0.25 -13.47 9.39 84.03 0.79 -12.68 16 5 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 6 C -0.05 -2.78 5.27 84.86 0.45 -2.33 16 7 N -0.92 -52.45 7.99 21.65 0.17 -52.28 16 8 Si 0.96 45.41 29.55 68.60 2.03 47.43 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 12 C 0.19 8.10 4.82 85.63 0.41 8.51 16 13 C -0.11 -4.15 5.88 -19.87 -0.12 -4.27 16 14 C -0.11 -4.51 9.17 22.27 0.20 -4.30 16 15 C -0.14 -4.66 10.05 22.27 0.22 -4.44 16 16 C -0.13 -3.50 10.05 22.27 0.22 -3.27 16 17 C -0.13 -3.52 9.36 22.27 0.21 -3.32 16 18 C -0.06 -2.01 5.59 -19.87 -0.11 -2.12 16 19 C -0.14 -3.63 5.39 -11.54 -0.06 -3.69 16 20 C -0.16 -3.01 9.87 30.60 0.30 -2.71 16 21 C -0.17 -3.73 10.21 30.59 0.31 -3.42 16 22 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.05 2.86 6.49 -2.39 -0.02 2.84 16 25 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 26 H 0.07 3.66 5.96 -2.38 -0.01 3.65 16 27 H 0.24 13.62 8.31 -92.71 -0.77 12.85 16 28 H 0.05 2.28 7.94 -2.39 -0.02 2.26 16 29 H 0.05 2.19 7.79 -2.39 -0.02 2.17 16 30 H 0.10 4.90 6.17 -2.91 -0.02 4.88 16 31 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.14 2.98 5.94 -2.91 -0.02 2.96 16 34 H 0.10 2.90 7.25 -2.39 -0.02 2.89 16 35 H 0.11 1.80 6.09 -2.39 -0.01 1.78 16 36 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -60.17 304.19 6.20 -53.97 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.03 Total: 16.30 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 3.93 Total: -34.10 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -0.78 Total: -83.61 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -60.17 6.20 -53.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611264098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.602 kcal (2) G-P(sol) polarization free energy of solvation -60.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds