Wall clock time and date at job start Sun Mar 29 2020 23:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38642 * 120.82479 * 2 1 4 4 Cl 1.73598 * 120.37195 * 359.97438 * 3 2 1 5 5 C 1.38353 * 119.25828 * 180.25732 * 3 2 1 6 6 N 1.31950 * 120.96040 * 359.79154 * 5 3 2 7 7 C 1.31816 * 121.80502 * 359.97428 * 6 5 3 8 8 Cl 1.73607 * 119.67866 * 180.02562 * 7 6 5 9 9 C 1.39268 * 120.63911 * 0.02562 * 7 6 5 10 10 N 1.39344 * 120.50657 * 179.97438 * 9 7 6 11 11 C 1.36835 * 119.99855 * 272.67123 * 10 9 7 12 12 H 1.08001 * 120.00482 * 5.81115 * 11 10 9 13 13 C 1.38793 * 120.00023 * 185.81663 * 11 10 9 14 14 N 1.31598 * 119.99716 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00379 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46824 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47119 * 119.99900 * 15 13 11 18 18 H 1.48501 * 109.47041 * 240.00134 * 15 13 11 19 19 H 1.09003 * 109.47192 * 270.20088 * 1 2 3 20 20 H 1.09002 * 109.47349 * 30.20077 * 1 2 3 21 21 H 1.09002 * 109.47439 * 150.20519 * 1 2 3 22 22 H 1.08002 * 119.52085 * 179.76798 * 5 3 2 23 23 H 0.96999 * 120.00417 * 92.93984 * 10 9 7 24 24 H 0.97005 * 119.99980 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2174 1.1906 0.0000 4 17 1.3810 2.7118 -0.0007 5 6 3.6004 1.1528 -0.0054 6 7 4.2480 0.0031 -0.0064 7 6 3.6130 -1.1520 -0.0019 8 17 4.5206 -2.6319 -0.0029 9 6 2.2210 -1.1966 0.0037 10 7 1.5525 -2.4193 0.0080 11 6 1.2681 -3.0476 -1.1738 12 1 1.6426 -2.6450 -2.1034 13 6 0.4982 -4.2024 -1.1781 14 7 0.0413 -4.6927 -0.0455 15 14 0.1092 -5.0599 -2.7914 16 1 0.7341 -4.3126 -3.9123 17 1 0.6461 -6.4440 -2.7583 18 1 -1.3623 -5.1041 -2.9862 19 1 -0.3634 0.0036 1.0277 20 1 -0.3634 0.8882 -0.5169 21 1 -0.3634 -0.8918 -0.5106 22 1 4.1580 2.0777 -0.0092 23 1 1.2854 -2.8231 0.8485 24 1 -0.4965 -5.5000 -0.0484 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534376.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:32 Heat of formation + Delta-G solvation = 12.223831 kcal Electronic energy + Delta-G solvation = -13443.138626 eV Core-core repulsion = 10828.765854 eV Total energy + Delta-G solvation = -2614.372772 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 246.002 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.37405 -37.82950 -37.30587 -37.04254 -34.48872 -33.05638 -30.41579 -28.70909 -26.19783 -23.70230 -22.99920 -19.49374 -18.22559 -18.15820 -17.49874 -16.31448 -16.03243 -15.51531 -15.08990 -14.38550 -14.11238 -13.87531 -13.26914 -13.15536 -12.92366 -12.78825 -12.33027 -12.25099 -12.19102 -11.99737 -11.98732 -11.38654 -10.72112 -10.29771 -9.64224 -9.32942 -8.02284 -5.40059 -0.23327 0.08347 0.79396 1.16522 1.47501 1.49725 1.58008 2.42995 2.55062 3.32670 3.39094 3.55366 3.63508 3.98032 4.32889 4.49915 4.74788 4.78514 5.10049 5.16434 5.40767 5.53981 6.18594 6.59758 7.23398 7.91829 8.06281 9.18293 Molecular weight = 246.00amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.008813 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.507424 B = 3176.429416 C = 4013.265655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.047 4.047 3 C -0.082 4.082 4 Cl -0.035 7.035 5 C 0.117 3.883 6 N -0.483 5.483 7 C 0.141 3.859 8 Cl -0.030 7.030 9 C 0.159 3.841 10 N -0.670 5.670 11 C -0.241 4.241 12 H 0.069 0.931 13 C -0.044 4.044 14 N -0.952 5.952 15 Si 0.966 3.034 16 H -0.270 1.270 17 H -0.292 1.292 18 H -0.288 1.288 19 H 0.084 0.916 20 H 0.087 0.913 21 H 0.067 0.933 22 H 0.203 0.797 23 H 0.390 0.610 24 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.244 12.631 0.489 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.058 4.058 3 C -0.112 4.112 4 Cl -0.006 7.006 5 C -0.042 4.042 6 N -0.195 5.195 7 C -0.025 4.025 8 Cl -0.002 7.002 9 C 0.058 3.942 10 N -0.308 5.308 11 C -0.371 4.371 12 H 0.087 0.913 13 C -0.239 4.239 14 N -0.599 5.599 15 Si 0.795 3.205 16 H -0.195 1.195 17 H -0.219 1.219 18 H -0.215 1.215 19 H 0.102 0.898 20 H 0.106 0.894 21 H 0.086 0.914 22 H 0.220 0.780 23 H 0.227 0.773 24 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.096 12.507 0.308 13.164 hybrid contribution -1.097 -1.036 -0.377 1.555 sum 2.999 11.471 -0.069 11.856 Atomic orbital electron populations 1.20694 0.88161 1.03770 1.03396 1.21225 0.98941 0.90562 0.95085 1.22094 0.93792 0.87790 1.07548 1.98351 1.77953 1.27563 1.96720 1.23019 0.89480 0.95974 0.95689 1.67102 1.40586 0.97379 1.14439 1.23362 0.89646 0.88592 1.00897 1.98373 1.74985 1.30539 1.96265 1.18190 0.89184 0.89005 0.97859 1.39613 1.66699 1.17724 1.06752 1.19180 1.26182 1.05920 0.85795 0.91340 1.25405 0.99760 0.99028 0.99686 1.69768 1.40184 1.23906 1.26059 0.85209 0.77393 0.78137 0.79787 1.19478 1.21944 1.21460 0.89795 0.89414 0.91404 0.78026 0.77298 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.33 9.46 71.23 0.67 -2.66 14 2 C -0.05 -1.63 5.94 -19.50 -0.12 -1.74 14 3 C -0.08 -2.36 6.34 22.39 0.14 -2.21 14 4 Cl -0.03 -0.78 27.47 -2.72 -0.07 -0.86 14 5 C 0.12 3.24 10.98 84.70 0.93 4.17 14 6 N -0.48 -16.66 10.33 -185.91 -1.92 -18.58 14 7 C 0.14 5.53 7.30 84.94 0.62 6.15 14 8 Cl -0.03 -1.20 28.60 -2.72 -0.08 -1.28 14 9 C 0.16 6.48 5.88 38.46 0.23 6.71 14 10 N -0.67 -31.66 3.83 -183.92 -0.71 -32.37 14 11 C -0.24 -12.42 9.54 84.05 0.80 -11.62 14 12 H 0.07 3.56 7.83 -2.91 -0.02 3.54 14 13 C -0.04 -2.35 5.50 84.86 0.47 -1.89 14 14 N -0.95 -53.64 13.06 21.65 0.28 -53.36 14 15 Si 0.97 43.69 29.55 68.60 2.03 45.71 14 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 14 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 14 18 H -0.29 -12.91 7.11 99.48 0.71 -12.20 14 19 H 0.08 2.50 8.14 -2.39 -0.02 2.48 14 20 H 0.09 2.37 7.03 -2.39 -0.02 2.36 14 21 H 0.07 2.63 7.24 -2.39 -0.02 2.61 14 22 H 0.20 3.91 8.06 -2.91 -0.02 3.88 14 23 H 0.39 19.75 8.03 -92.71 -0.74 19.01 14 24 H 0.26 14.06 8.31 -92.70 -0.77 13.29 14 Total: -1.00 -56.33 249.74 3.78 -52.55 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.51 Total: 11.27 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 3.74 Total: -3.09 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -2.34 Total: -104.31 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.15 Total: -2.13 kcal Total: -56.33 3.78 -52.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534376.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.772 kcal (2) G-P(sol) polarization free energy of solvation -56.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds