Wall clock time and date at job start Sun Mar 29 2020 22:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38266 * 120.11547 * 2 1 4 4 C 1.37926 * 119.77217 * 180.09160 * 3 2 1 5 5 C 1.38918 * 120.54353 * 0.05644 * 4 3 2 6 6 C 1.37662 * 119.68515 * 359.71332 * 5 4 3 7 7 C 1.37935 * 120.11273 * 179.97438 * 2 1 3 8 8 C 1.50629 * 122.56416 * 180.38526 * 6 5 4 9 9 C 1.52739 * 110.58923 * 342.23252 * 8 6 5 10 10 H 1.09000 * 109.68107 * 291.33648 * 9 8 6 11 11 N 1.46495 * 109.67801 * 170.82198 * 9 8 6 12 12 C 1.46499 * 120.00192 * 299.99517 * 11 9 8 13 13 C 1.36942 * 120.00093 * 120.00151 * 11 9 8 14 14 H 1.08006 * 119.99578 * 339.73265 * 13 11 9 15 15 C 1.38809 * 120.00378 * 159.45474 * 13 11 9 16 16 N 1.31621 * 119.99518 * 347.96923 * 15 13 11 17 17 Si 1.86795 * 120.00060 * 167.96581 * 15 13 11 18 18 H 1.48501 * 109.47115 * 60.00514 * 17 15 13 19 19 H 1.48499 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47417 * 300.00201 * 17 15 13 21 21 C 1.53325 * 108.38791 * 51.09839 * 9 8 6 22 22 C 1.50631 * 117.75020 * 179.39149 * 5 4 3 23 23 H 1.09002 * 109.47006 * 270.02150 * 1 2 3 24 24 H 1.08996 * 109.46556 * 30.02323 * 1 2 3 25 25 H 1.08994 * 109.47245 * 150.02253 * 1 2 3 26 26 H 1.07999 * 120.11478 * 0.07487 * 3 2 1 27 27 H 1.07998 * 119.73062 * 179.97438 * 4 3 2 28 28 H 1.07997 * 119.72713 * 359.97438 * 7 2 1 29 29 H 1.08998 * 109.25231 * 221.94901 * 8 6 5 30 30 H 1.08996 * 109.25308 * 102.52075 * 8 6 5 31 31 H 1.08996 * 109.47451 * 264.86121 * 12 11 9 32 32 H 1.08998 * 109.46954 * 24.86989 * 12 11 9 33 33 H 1.09003 * 109.46786 * 144.86229 * 12 11 9 34 34 H 0.97007 * 119.99595 * 179.97438 * 16 15 13 35 35 H 1.08995 * 109.68223 * 49.85607 * 21 9 8 36 36 H 1.08993 * 109.67875 * 170.41608 * 21 9 8 37 37 H 1.08999 * 109.25050 * 282.83170 * 22 5 4 38 38 H 1.08998 * 109.25351 * 42.25975 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1960 0.0000 4 6 3.5800 1.1878 -0.0019 5 6 4.2788 -0.0129 -0.0050 6 6 3.5881 -1.2037 -0.0002 7 6 2.1991 -1.1932 0.0005 8 6 4.2795 -2.5419 0.0054 9 6 5.7358 -2.3959 -0.4314 10 1 5.7774 -2.1307 -1.4878 11 7 6.4457 -3.6584 -0.2114 12 6 6.5392 -4.2207 1.1381 13 6 7.0221 -4.3128 -1.2672 14 1 6.6962 -4.1033 -2.2754 15 6 8.0292 -5.2412 -1.0423 16 7 8.5945 -5.3245 0.1434 17 14 8.5820 -6.3724 -2.4221 18 1 9.0909 -5.5588 -3.5554 19 1 9.6617 -7.2644 -1.9284 20 1 7.4325 -7.1938 -2.8795 21 6 6.3831 -1.2867 0.4062 22 6 5.7837 0.0515 -0.0211 23 1 -0.3633 0.0004 1.0277 24 1 -0.3632 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5134 26 1 1.6646 2.1335 0.0012 27 1 4.1212 2.1224 -0.0023 28 1 1.6565 -2.1270 0.0014 29 1 3.7646 -3.2153 -0.6798 30 1 4.2462 -2.9595 1.0116 31 1 7.4805 -3.9151 1.5948 32 1 5.7076 -3.8570 1.7416 33 1 6.4988 -5.3085 1.0820 34 1 9.2981 -5.9736 0.3008 35 1 6.1803 -1.4591 1.4632 36 1 7.4595 -1.2782 0.2349 37 1 6.1223 0.2916 -1.0290 38 1 6.1175 0.8302 0.6646 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172830341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:04 Heat of formation + Delta-G solvation = 28.645169 kcal Electronic energy + Delta-G solvation = -17656.665006 eV Core-core repulsion = 15077.653196 eV Total energy + Delta-G solvation = -2579.011810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.80369 -36.82470 -34.29302 -32.33986 -31.30248 -30.33334 -27.83773 -26.37790 -25.94830 -23.51852 -22.10577 -21.83454 -20.49952 -18.18114 -16.74617 -15.85847 -15.31624 -15.06850 -14.43852 -14.07651 -13.64545 -13.51620 -13.43838 -12.88878 -12.66405 -12.52970 -12.28584 -12.03584 -11.92691 -11.47135 -11.02559 -10.93685 -10.79809 -10.73633 -10.45661 -10.29834 -10.18907 -9.91935 -9.73490 -9.59579 -8.49502 -8.44530 -8.09934 -6.71743 -5.66435 -3.10496 1.57404 1.63376 3.41954 3.47158 3.48162 3.94306 4.52222 4.92926 4.95963 5.13601 5.20167 5.31599 5.45883 5.53503 5.57070 5.61482 5.67760 5.70080 5.78803 5.90617 6.05373 6.08685 6.14098 6.33124 6.38044 6.44448 6.51655 6.56993 6.69109 6.77027 6.86600 7.04388 7.07482 7.09553 7.30966 7.47874 7.79139 7.86857 8.45027 9.29996 9.93885 10.42306 11.38355 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.038349 B = 0.005310 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.969532 B = 5271.760090 C = 5517.196003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.132 4.132 4 C -0.120 4.120 5 C -0.078 4.078 6 C -0.055 4.055 7 C -0.124 4.124 8 C -0.099 4.099 9 C 0.182 3.818 10 H 0.063 0.937 11 N -0.597 5.597 12 C 0.164 3.836 13 C -0.252 4.252 14 H 0.068 0.932 15 C 0.000 4.000 16 N -0.910 5.910 17 Si 0.904 3.096 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.131 4.131 22 C -0.078 4.078 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.028 0.972 32 H -0.003 1.003 33 H 0.043 0.957 34 H 0.252 0.748 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 11.195 1.052 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.055 4.055 7 C -0.142 4.142 8 C -0.138 4.138 9 C 0.073 3.927 10 H 0.082 0.918 11 N -0.318 5.318 12 C 0.020 3.980 13 C -0.381 4.381 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.556 5.556 17 Si 0.735 3.265 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.171 4.171 22 C -0.115 4.115 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.016 0.984 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.794 11.036 1.111 16.190 hybrid contribution 0.357 -0.590 -0.638 0.939 sum -11.437 10.446 0.473 15.496 Atomic orbital electron populations 1.20735 0.91694 1.02343 1.01900 1.19758 0.95633 0.93335 1.00995 1.20818 0.94151 0.97122 1.02956 1.21109 0.94091 0.97423 1.01161 1.19736 0.95991 0.92230 0.99815 1.19852 0.93090 0.95260 0.97332 1.21067 0.93773 0.97339 1.02018 1.21123 0.98144 0.92202 1.02334 1.20255 0.88913 0.86209 0.97307 0.91832 1.43961 1.62274 1.20302 1.05295 1.20765 0.95582 0.97438 0.84242 1.19220 1.13306 1.18064 0.87548 0.91429 1.24960 0.96841 1.01168 0.96819 1.70081 1.26897 1.37290 1.21327 0.86334 0.77935 0.80763 0.81505 1.21027 1.21686 1.21178 1.22132 1.00768 0.93864 1.00328 1.20497 0.90473 0.99032 1.01545 0.91593 0.91956 0.91788 0.86742 0.86600 0.86504 0.91179 0.90685 0.95368 0.98426 0.93857 0.93820 0.92656 0.91232 0.90994 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.02 36.01 0.36 -0.71 16 2 C -0.10 -1.26 5.87 -104.72 -0.61 -1.87 16 3 C -0.13 -1.67 9.71 -39.69 -0.39 -2.06 16 4 C -0.12 -1.62 9.61 -39.44 -0.38 -2.00 16 5 C -0.08 -1.21 5.74 -104.61 -0.60 -1.81 16 6 C -0.05 -0.89 5.74 -104.62 -0.60 -1.49 16 7 C -0.12 -1.81 9.27 -39.44 -0.37 -2.17 16 8 C -0.10 -1.81 5.11 -28.05 -0.14 -1.96 16 9 C 0.18 3.78 2.62 -67.90 -0.18 3.61 16 10 H 0.06 1.37 7.82 -51.93 -0.41 0.96 16 11 N -0.60 -15.05 2.84 -173.45 -0.49 -15.54 16 12 C 0.16 4.09 8.18 59.85 0.49 4.58 16 13 C -0.25 -6.97 9.63 -15.06 -0.15 -7.12 16 14 H 0.07 1.83 7.80 -52.48 -0.41 1.42 16 15 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 16 N -0.91 -26.71 10.51 55.49 0.58 -26.13 16 17 Si 0.90 22.05 29.57 -169.99 -5.03 17.02 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 C -0.13 -2.46 5.11 -26.70 -0.14 -2.59 16 22 C -0.08 -1.20 5.67 -28.05 -0.16 -1.36 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 25 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 27 H 0.12 1.32 8.05 -52.49 -0.42 0.89 16 28 H 0.12 1.55 8.05 -52.49 -0.42 1.13 16 29 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 30 H 0.07 1.41 6.37 -51.93 -0.33 1.08 16 31 H 0.03 0.76 7.41 -51.93 -0.38 0.37 16 32 H 0.00 -0.06 6.32 -51.93 -0.33 -0.39 16 33 H 0.04 1.16 7.14 -51.93 -0.37 0.79 16 34 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.05 1.05 7.96 -51.93 -0.41 0.63 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 LS Contribution 301.76 15.07 4.55 4.55 Total: -1.00 -29.57 301.76 -9.33 -38.90 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.00 Total: -1.76 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.95 Total: -17.04 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.09 Total: -41.67 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.57 -9.33 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172830341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.546 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds