Wall clock time and date at job start Sun Mar 29 2020 22:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38266 * 120.11547 * 2 1 4 4 C 1.37926 * 119.77217 * 180.09160 * 3 2 1 5 5 C 1.38918 * 120.54353 * 0.05644 * 4 3 2 6 6 C 1.37662 * 119.68515 * 359.71332 * 5 4 3 7 7 C 1.37935 * 120.11273 * 179.97438 * 2 1 3 8 8 C 1.50629 * 122.56416 * 180.38526 * 6 5 4 9 9 C 1.52739 * 110.58923 * 342.23252 * 8 6 5 10 10 H 1.09000 * 109.68107 * 291.33648 * 9 8 6 11 11 N 1.46495 * 109.67801 * 170.82198 * 9 8 6 12 12 C 1.46499 * 120.00192 * 299.99517 * 11 9 8 13 13 C 1.36942 * 120.00093 * 120.00151 * 11 9 8 14 14 H 1.08006 * 119.99578 * 339.73265 * 13 11 9 15 15 C 1.38809 * 120.00378 * 159.45474 * 13 11 9 16 16 N 1.31621 * 119.99518 * 347.96923 * 15 13 11 17 17 Si 1.86795 * 120.00060 * 167.96581 * 15 13 11 18 18 H 1.48501 * 109.47115 * 60.00514 * 17 15 13 19 19 H 1.48499 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47417 * 300.00201 * 17 15 13 21 21 C 1.53325 * 108.38791 * 51.09839 * 9 8 6 22 22 C 1.50631 * 117.75020 * 179.39149 * 5 4 3 23 23 H 1.09002 * 109.47006 * 270.02150 * 1 2 3 24 24 H 1.08996 * 109.46556 * 30.02323 * 1 2 3 25 25 H 1.08994 * 109.47245 * 150.02253 * 1 2 3 26 26 H 1.07999 * 120.11478 * 0.07487 * 3 2 1 27 27 H 1.07998 * 119.73062 * 179.97438 * 4 3 2 28 28 H 1.07997 * 119.72713 * 359.97438 * 7 2 1 29 29 H 1.08998 * 109.25231 * 221.94901 * 8 6 5 30 30 H 1.08996 * 109.25308 * 102.52075 * 8 6 5 31 31 H 1.08996 * 109.47451 * 264.86121 * 12 11 9 32 32 H 1.08998 * 109.46954 * 24.86989 * 12 11 9 33 33 H 1.09003 * 109.46786 * 144.86229 * 12 11 9 34 34 H 0.97007 * 119.99595 * 179.97438 * 16 15 13 35 35 H 1.08995 * 109.68223 * 49.85607 * 21 9 8 36 36 H 1.08993 * 109.67875 * 170.41608 * 21 9 8 37 37 H 1.08999 * 109.25050 * 282.83170 * 22 5 4 38 38 H 1.08998 * 109.25351 * 42.25975 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1960 0.0000 4 6 3.5800 1.1878 -0.0019 5 6 4.2788 -0.0129 -0.0050 6 6 3.5881 -1.2037 -0.0002 7 6 2.1991 -1.1932 0.0005 8 6 4.2795 -2.5419 0.0054 9 6 5.7358 -2.3959 -0.4314 10 1 5.7774 -2.1307 -1.4878 11 7 6.4457 -3.6584 -0.2114 12 6 6.5392 -4.2207 1.1381 13 6 7.0221 -4.3128 -1.2672 14 1 6.6962 -4.1033 -2.2754 15 6 8.0292 -5.2412 -1.0423 16 7 8.5945 -5.3245 0.1434 17 14 8.5820 -6.3724 -2.4221 18 1 9.0909 -5.5588 -3.5554 19 1 9.6617 -7.2644 -1.9284 20 1 7.4325 -7.1938 -2.8795 21 6 6.3831 -1.2867 0.4062 22 6 5.7837 0.0515 -0.0211 23 1 -0.3633 0.0004 1.0277 24 1 -0.3632 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5134 26 1 1.6646 2.1335 0.0012 27 1 4.1212 2.1224 -0.0023 28 1 1.6565 -2.1270 0.0014 29 1 3.7646 -3.2153 -0.6798 30 1 4.2462 -2.9595 1.0116 31 1 7.4805 -3.9151 1.5948 32 1 5.7076 -3.8570 1.7416 33 1 6.4988 -5.3085 1.0820 34 1 9.2981 -5.9736 0.3008 35 1 6.1803 -1.4591 1.4632 36 1 7.4595 -1.2782 0.2349 37 1 6.1223 0.2916 -1.0290 38 1 6.1175 0.8302 0.6646 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172830341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:03 Heat of formation + Delta-G solvation = 14.314903 kcal Electronic energy + Delta-G solvation = -17657.286413 eV Core-core repulsion = 15077.653196 eV Total energy + Delta-G solvation = -2579.633217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00244 -38.37731 -35.90308 -33.75441 -32.74905 -31.80983 -29.29869 -28.04602 -27.43708 -25.23781 -23.50496 -22.96014 -21.97779 -19.64530 -18.78717 -17.25247 -16.84051 -16.31192 -15.95081 -15.41824 -15.12603 -14.95257 -14.74721 -14.35265 -14.19244 -13.79470 -13.65000 -13.32486 -13.16695 -12.82134 -12.76267 -12.67220 -12.38988 -12.20963 -12.14748 -11.96834 -11.92904 -11.56750 -11.38933 -11.23031 -10.61010 -9.54801 -9.20622 -8.78190 -7.80873 -5.27319 0.50975 0.54383 1.46168 1.48754 1.55340 2.51109 2.86713 3.31804 3.54579 3.84232 4.02633 4.07607 4.14652 4.16516 4.30830 4.39806 4.54692 4.61111 4.66992 4.72995 4.81672 4.87518 4.92154 4.99335 5.02401 5.07693 5.12976 5.23068 5.29388 5.36395 5.48725 5.49181 5.63651 5.66792 5.73397 5.76774 5.88411 6.22360 6.33953 7.16606 7.89474 8.33093 9.22293 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.038349 B = 0.005310 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.969532 B = 5271.760090 C = 5517.196003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.120 4.120 5 C -0.095 4.095 6 C -0.078 4.078 7 C -0.136 4.136 8 C -0.084 4.084 9 C 0.177 3.823 10 H 0.052 0.948 11 N -0.613 5.613 12 C 0.183 3.817 13 C -0.264 4.264 14 H 0.069 0.931 15 C -0.054 4.054 16 N -0.940 5.940 17 Si 0.970 3.030 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.279 1.279 21 C -0.121 4.121 22 C -0.069 4.069 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.002 0.998 32 H 0.025 0.975 33 H 0.016 0.984 34 H 0.247 0.753 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.859 13.188 0.506 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.095 4.095 6 C -0.079 4.079 7 C -0.154 4.154 8 C -0.122 4.122 9 C 0.070 3.930 10 H 0.071 0.929 11 N -0.335 5.335 12 C 0.038 3.962 13 C -0.394 4.394 14 H 0.087 0.913 15 C -0.248 4.248 16 N -0.588 5.588 17 Si 0.798 3.202 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.206 1.206 21 C -0.161 4.161 22 C -0.106 4.106 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.164 0.836 27 H 0.158 0.842 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.020 0.980 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.731 13.059 0.553 18.958 hybrid contribution 0.858 -1.127 -0.466 1.491 sum -12.874 11.932 0.087 17.553 Atomic orbital electron populations 1.20797 0.89297 1.03489 1.02970 1.20155 0.97449 0.92763 0.99380 1.21239 0.93993 0.98300 1.01180 1.21372 0.94779 0.97421 1.00182 1.19797 0.95810 0.92899 1.01027 1.19725 0.94004 0.94269 0.99904 1.21194 0.93126 0.98630 1.02442 1.20834 0.96245 0.93857 1.01313 1.20420 0.90228 0.85138 0.97215 0.92950 1.44183 1.62585 1.21975 1.04739 1.20446 0.95352 0.95694 0.84698 1.19558 1.13170 1.18330 0.88311 0.91328 1.25730 0.97234 1.02739 0.99136 1.70255 1.27439 1.37888 1.23170 0.85306 0.77328 0.78736 0.78865 1.20157 1.21968 1.20560 1.21931 0.99243 0.95331 0.99575 1.20412 0.90741 0.97214 1.02267 0.90437 0.90146 0.91405 0.83619 0.84151 0.86006 0.92059 0.91636 0.97966 0.95625 0.96563 0.94356 0.93123 0.93605 0.90571 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.02 71.24 0.71 -1.01 16 2 C -0.10 -2.22 5.87 -19.93 -0.12 -2.34 16 3 C -0.13 -2.75 9.71 22.20 0.22 -2.54 16 4 C -0.12 -2.83 9.61 22.36 0.21 -2.62 16 5 C -0.10 -2.79 5.74 -19.86 -0.11 -2.91 16 6 C -0.08 -2.50 5.74 -19.86 -0.11 -2.61 16 7 C -0.14 -3.75 9.27 22.36 0.21 -3.54 16 8 C -0.08 -3.10 5.11 29.74 0.15 -2.95 16 9 C 0.18 7.53 2.62 45.01 0.12 7.65 16 10 H 0.05 2.31 7.82 -2.39 -0.02 2.29 16 11 N -0.61 -31.83 2.84 -702.67 -1.99 -33.82 16 12 C 0.18 9.45 8.18 127.77 1.05 10.50 16 13 C -0.26 -14.94 9.63 84.03 0.81 -14.13 16 14 H 0.07 3.78 7.80 -2.91 -0.02 3.76 16 15 C -0.05 -3.08 5.13 84.86 0.44 -2.65 16 16 N -0.94 -56.89 10.51 21.65 0.23 -56.66 16 17 Si 0.97 46.04 29.57 68.60 2.03 48.07 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 21 C -0.12 -4.60 5.11 30.62 0.16 -4.44 16 22 C -0.07 -2.03 5.67 29.74 0.17 -1.86 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 25 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 26 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 27 H 0.14 2.59 8.05 -2.91 -0.02 2.56 16 28 H 0.12 3.11 8.05 -2.91 -0.02 3.09 16 29 H 0.06 2.31 8.12 -2.39 -0.02 2.29 16 30 H 0.07 2.49 6.37 -2.39 -0.02 2.48 16 31 H 0.00 0.12 7.41 -2.39 -0.02 0.10 16 32 H 0.03 1.15 6.32 -2.39 -0.02 1.13 16 33 H 0.02 0.89 7.14 -2.39 -0.02 0.87 16 34 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 35 H 0.05 1.93 7.96 -2.39 -0.02 1.92 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.09 2.19 8.13 -2.39 -0.02 2.18 16 Total: -1.00 -64.67 301.76 5.17 -59.50 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.02 Total: 8.35 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.89 Total: -25.44 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -1.77 Total: -90.48 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -64.67 5.17 -59.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172830341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.816 kcal (2) G-P(sol) polarization free energy of solvation -64.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds