Wall clock time and date at job start Sun Mar 29 2020 22:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00607 * 2 1 4 4 H 1.48501 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46827 * 299.99786 * 3 2 1 6 6 H 1.48499 * 109.46818 * 59.99927 * 3 2 1 7 7 C 1.37885 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99665 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47156 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47375 * 180.02562 * 10 9 7 12 12 C 1.42897 * 114.00161 * 180.02562 * 11 10 9 13 13 C 1.53117 * 109.52210 * 210.00026 * 12 11 10 14 14 C 1.53042 * 109.27738 * 182.37054 * 13 12 11 15 15 N 1.46851 * 109.51830 * 59.18214 * 14 13 12 16 16 C 1.46898 * 110.99682 * 174.15734 * 15 14 13 17 17 C 1.53006 * 109.47006 * 170.00115 * 16 15 14 18 18 F 1.39903 * 109.46814 * 180.02562 * 17 16 15 19 19 C 1.46839 * 111.19765 * 298.25422 * 15 14 13 20 20 C 1.53038 * 109.52321 * 61.74421 * 19 15 14 21 21 H 0.97008 * 119.99349 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47559 * 60.00145 * 9 7 2 23 23 H 1.08999 * 109.47518 * 300.00141 * 9 7 2 24 24 H 1.09003 * 109.46742 * 60.00288 * 10 9 7 25 25 H 1.08999 * 109.47266 * 300.00594 * 10 9 7 26 26 H 1.09006 * 109.52169 * 330.12185 * 12 11 10 27 27 H 1.09006 * 109.50431 * 62.43518 * 13 12 11 28 28 H 1.08995 * 109.53846 * 302.33626 * 13 12 11 29 29 H 1.08992 * 109.46857 * 299.16430 * 14 13 12 30 30 H 1.09007 * 109.45121 * 179.18665 * 14 13 12 31 31 H 1.09001 * 109.47392 * 50.00413 * 16 15 14 32 32 H 1.09001 * 109.47520 * 290.00136 * 16 15 14 33 33 H 1.09001 * 109.47002 * 299.99782 * 17 16 15 34 34 H 1.08993 * 109.46955 * 60.00219 * 17 16 15 35 35 H 1.09000 * 109.46389 * 181.75688 * 19 15 14 36 36 H 1.08998 * 109.46466 * 301.72418 * 19 15 14 37 37 H 1.09001 * 109.50415 * 180.87699 * 20 19 15 38 38 H 1.09005 * 109.50244 * 60.76180 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 8 1.5304 -4.8997 -0.0001 12 6 2.3702 -6.0559 0.0005 13 6 1.6602 -7.2043 -0.7217 14 6 2.5390 -8.4560 -0.6663 15 7 2.7915 -8.8167 0.7346 16 6 3.5158 -10.0913 0.8277 17 6 3.9780 -10.3111 2.2696 18 9 4.6683 -11.5248 2.3581 19 6 3.5145 -7.7481 1.4359 20 6 2.6649 -6.4753 1.4432 21 1 -0.4849 0.8402 -0.0004 22 1 0.6245 -2.5571 -0.8897 23 1 0.6238 -2.5567 0.8902 24 1 2.8716 -3.6045 0.8906 25 1 2.8717 -3.6045 -0.8894 26 1 3.3054 -5.8270 -0.5106 27 1 1.4859 -6.9278 -1.7616 28 1 0.7066 -7.4073 -0.2344 29 1 3.4867 -8.2570 -1.1666 30 1 2.0298 -9.2795 -1.1672 31 1 4.3833 -10.0653 0.1681 32 1 2.8567 -10.9065 0.5292 33 1 4.6373 -9.4960 2.5681 34 1 3.1107 -10.3371 2.9292 35 1 3.7140 -8.0574 2.4619 36 1 4.4576 -7.5524 0.9259 37 1 3.2083 -5.6779 1.9502 38 1 1.7273 -6.6666 1.9653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205631574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:14 Heat of formation + Delta-G solvation = -111.540897 kcal Electronic energy + Delta-G solvation = -17771.672223 eV Core-core repulsion = 14755.812265 eV Total energy + Delta-G solvation = -3015.859959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 245.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.92307 -39.48086 -37.11986 -33.67587 -32.76729 -31.08076 -29.93640 -28.50411 -24.86371 -24.25372 -23.00436 -21.60181 -20.88997 -19.80318 -17.16618 -16.60453 -16.53078 -15.76796 -15.52229 -15.15069 -14.86929 -14.78625 -14.48938 -14.09317 -13.64201 -13.30337 -13.06750 -12.44260 -12.30572 -12.20690 -11.66707 -11.35735 -11.26528 -11.14435 -11.05976 -10.96377 -10.78640 -10.50628 -10.23002 -10.13330 -9.46824 -9.19380 -8.83783 -8.63120 -8.36703 -6.04209 -4.07805 3.28983 3.36014 3.39819 3.47409 4.16156 4.25221 4.42525 4.47875 4.61075 4.78186 4.87011 5.04432 5.10571 5.12426 5.26849 5.31826 5.32086 5.47014 5.50388 5.59386 5.65321 5.69834 5.92221 6.02125 6.20141 6.22297 6.36349 6.39603 6.75483 6.78864 6.88806 7.55532 7.78577 7.83196 8.11613 8.35394 8.99085 9.55966 11.07468 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.054261 B = 0.003479 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.897179 B = 8045.652389 C = 8322.512591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.069 3.931 11 O -0.383 6.383 12 C 0.088 3.912 13 C -0.114 4.114 14 C 0.062 3.938 15 N -0.535 5.535 16 C 0.024 3.976 17 C 0.056 3.944 18 F -0.218 7.218 19 C 0.048 3.952 20 C -0.139 4.139 21 H 0.261 0.739 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 -19.340 1.709 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.006 4.006 11 O -0.302 6.302 12 C 0.029 3.971 13 C -0.152 4.152 14 C -0.066 4.066 15 N -0.261 5.261 16 C -0.104 4.104 17 C 0.001 3.999 18 F -0.199 7.199 19 C -0.080 4.080 20 C -0.177 4.177 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.649 -19.310 1.937 20.514 hybrid contribution 1.559 1.050 -0.391 1.919 sum 8.208 -18.260 1.546 20.080 Atomic orbital electron populations 1.69995 1.06071 1.26649 1.50217 1.25003 0.94880 0.99306 0.95139 0.86476 0.79995 0.83505 0.77664 1.19720 1.20905 1.20897 1.21093 0.93009 0.90594 1.51492 0.92556 1.19072 0.94247 0.89466 0.98436 1.22906 0.96340 0.83401 0.97993 1.87974 1.33843 1.13599 1.94826 1.21973 0.93560 0.87149 0.94429 1.21640 0.99827 0.92465 1.01226 1.22078 0.98833 0.98085 0.87600 1.61990 1.46976 1.02097 1.15018 1.22643 0.97980 0.93647 0.96148 1.22186 0.96887 0.82635 0.98209 1.92766 1.81749 1.48038 1.97368 1.22257 0.95196 0.91571 0.98927 1.22102 1.01188 0.95780 0.98609 0.92893 0.95780 0.95727 0.94810 0.94855 0.93201 0.90680 0.90092 0.94621 0.90167 0.93732 0.89417 0.90398 0.89625 0.90150 0.94625 0.91027 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.52 5.69 37.16 0.21 1.73 16 11 O -0.38 -7.71 10.00 -35.23 -0.35 -8.07 16 12 C 0.09 1.33 2.67 -26.61 -0.07 1.26 16 13 C -0.11 -1.45 5.75 -26.65 -0.15 -1.61 16 14 C 0.06 0.63 5.42 -3.83 -0.02 0.61 16 15 N -0.54 -5.45 4.81 -234.67 -1.13 -6.57 16 16 C 0.02 0.20 5.73 -3.82 -0.02 0.18 16 17 C 0.06 0.44 6.80 37.16 0.25 0.70 16 18 F -0.22 -2.19 17.36 2.25 0.04 -2.15 16 19 C 0.05 0.50 4.85 -3.84 -0.02 0.48 16 20 C -0.14 -1.83 5.72 -26.65 -0.15 -1.99 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.03 0.71 7.96 -51.93 -0.41 0.29 16 25 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.55 6.21 -51.93 -0.32 0.23 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.70 5.81 -51.93 -0.30 0.40 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.97 7.96 -51.93 -0.41 0.55 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -30.86 308.20 -8.08 -38.94 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -6.46 Total: -5.30 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.53 Total: -11.79 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: -0.39 Total: -32.82 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.35 Total: -8.07 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.86 -8.08 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.599 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds