Wall clock time and date at job start Sun Mar 29 2020 22:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 119.99767 * 2 1 4 4 H 1.08998 * 109.47118 * 244.99965 * 3 2 1 5 5 N 1.46898 * 109.47256 * 5.00138 * 3 2 1 6 6 C 1.46894 * 111.00155 * 271.53541 * 5 3 2 7 7 H 1.08995 * 109.47093 * 33.76940 * 6 5 3 8 8 C 1.50698 * 109.47138 * 153.77176 * 6 5 3 9 9 H 1.08002 * 120.00336 * 0.02562 * 8 6 5 10 10 C 1.37876 * 120.00038 * 179.97438 * 8 6 5 11 11 N 1.31513 * 120.00079 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00271 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46849 * 90.00287 * 12 10 8 14 14 H 1.48497 * 109.47574 * 210.00471 * 12 10 8 15 15 H 1.48502 * 109.47116 * 330.00596 * 12 10 8 16 16 C 1.53002 * 109.47108 * 273.77249 * 6 5 3 17 17 C 1.53001 * 109.46871 * 295.38022 * 16 6 5 18 18 C 1.50701 * 109.46674 * 125.00289 * 3 2 1 19 19 C 1.38232 * 119.99710 * 279.72368 * 18 3 2 20 20 C 1.38243 * 119.99825 * 179.81508 * 19 18 3 21 21 C 1.38237 * 119.99647 * 0.39645 * 20 19 18 22 22 C 1.38234 * 120.00224 * 359.86064 * 21 20 19 23 23 C 1.38230 * 119.99917 * 100.00595 * 18 3 2 24 24 H 1.08010 * 119.99891 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00594 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.00197 * 180.02562 * 2 1 3 27 27 H 1.00905 * 110.99926 * 147.57338 * 5 3 2 28 28 H 0.97003 * 120.00260 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.46801 * 55.37837 * 16 6 5 30 30 H 1.08999 * 109.47147 * 175.38437 * 16 6 5 31 31 H 1.09001 * 109.47053 * 178.02587 * 17 16 6 32 32 H 1.08993 * 109.47546 * 298.02686 * 17 16 6 33 33 H 1.09002 * 109.47263 * 58.02907 * 17 16 6 34 34 H 1.07995 * 120.00287 * 0.02562 * 19 18 3 35 35 H 1.07995 * 120.00299 * 180.23120 * 20 19 18 36 36 H 1.08001 * 120.00102 * 179.83640 * 21 20 19 37 37 H 1.08000 * 120.00201 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.00260 * 359.97083 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 2.6212 1.4027 -0.9314 5 7 1.1134 2.4190 0.1207 6 6 0.6415 2.8541 -1.2006 7 1 0.5790 1.9929 -1.8657 8 6 -0.7207 3.4841 -1.0651 9 1 -1.1890 3.5547 -0.0944 10 6 -1.3689 3.9714 -2.1802 11 7 -0.7986 3.8859 -3.3621 12 14 -3.0578 4.7517 -2.0124 13 1 -2.9078 6.2090 -1.7689 14 1 -3.8294 4.5356 -3.2626 15 1 -3.7788 4.1310 -0.8722 16 6 1.6209 3.8765 -1.7807 17 6 1.6222 5.1334 -0.9082 18 6 3.0204 1.3326 1.1639 19 6 2.5603 1.6440 2.4296 20 6 3.4374 1.6655 3.4980 21 6 4.7760 1.3835 3.2989 22 6 5.2370 1.0773 2.0322 23 6 4.3592 1.0521 0.9646 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9352 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.5211 3.1885 0.6306 28 1 -1.2547 4.2284 -4.1467 29 1 2.6229 3.4480 -1.8022 30 1 1.3155 4.1379 -2.7939 31 1 2.3455 5.8478 -1.3014 32 1 0.6286 5.5814 -0.9148 33 1 1.8936 4.8664 0.1132 34 1 1.5151 1.8672 2.5846 35 1 3.0774 1.9051 4.4875 36 1 5.4618 1.4029 4.1330 37 1 6.2829 0.8575 1.8766 38 1 4.7193 0.8128 -0.0251 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:59 Heat of formation + Delta-G solvation = 31.455497 kcal Electronic energy + Delta-G solvation = -17804.550013 eV Core-core repulsion = 15225.660068 eV Total energy + Delta-G solvation = -2578.889945 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48923 -38.44754 -35.69954 -33.50900 -32.06855 -31.73514 -30.89300 -28.28493 -26.05958 -25.14517 -23.29062 -22.33746 -21.30932 -19.87689 -18.39280 -17.63147 -16.88576 -16.67867 -16.03097 -15.43645 -15.26766 -15.11264 -14.63893 -14.39549 -14.13708 -13.95327 -13.58298 -13.50953 -13.15431 -12.81768 -12.61732 -12.44503 -12.15319 -11.92972 -11.84084 -11.78635 -11.53682 -11.38840 -10.92604 -10.40702 -10.04366 -9.74005 -9.54069 -8.94660 -8.02371 -6.09975 0.50524 0.58363 1.43742 1.45915 1.55116 1.64151 2.47631 2.96684 3.26952 3.64445 3.93034 4.11914 4.24146 4.34225 4.37982 4.51813 4.54670 4.60020 4.69172 4.71864 4.78865 4.84662 5.11048 5.13695 5.24300 5.28800 5.39238 5.43600 5.62814 5.67047 5.69108 5.76343 5.77622 5.90312 5.97199 6.18478 6.21582 6.37893 6.72054 6.89799 7.02679 7.57690 9.03168 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.030881 B = 0.006177 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.479691 B = 4531.927594 C = 4725.113551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.163 4.163 3 C 0.153 3.847 4 H 0.036 0.964 5 N -0.670 5.670 6 C 0.228 3.772 7 H 0.000 1.000 8 C -0.492 4.492 9 H 0.053 0.947 10 C 0.015 3.985 11 N -0.921 5.921 12 Si 0.948 3.052 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.271 1.271 16 C -0.141 4.141 17 C -0.117 4.117 18 C -0.088 4.088 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.129 4.129 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.333 0.667 28 H 0.257 0.743 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.118 0.882 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 -4.729 10.717 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C 0.043 3.957 4 H 0.054 0.946 5 N -0.302 5.302 6 C 0.119 3.881 7 H 0.018 0.982 8 C -0.531 4.531 9 H 0.071 0.929 10 C -0.184 4.184 11 N -0.562 5.562 12 Si 0.775 3.225 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.196 1.196 16 C -0.180 4.180 17 C -0.174 4.174 18 C -0.089 4.089 19 C -0.132 4.132 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.148 4.148 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.153 0.847 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.596 -5.092 10.649 15.212 hybrid contribution -0.360 0.848 -0.954 1.327 sum 9.236 -4.244 9.695 14.047 Atomic orbital electron populations 1.24080 0.96800 1.02108 0.98190 1.22843 0.96079 0.96660 1.02536 1.19354 0.90541 0.91749 0.94094 0.94599 1.60820 1.38812 1.10597 1.19959 1.18933 0.92658 0.91774 0.84725 0.98212 1.21228 1.01865 1.36704 0.93285 0.92863 1.25552 1.00713 0.96956 0.95129 1.70013 1.39129 1.48169 0.98878 0.85703 0.80829 0.78802 0.77149 1.20416 1.21533 1.19601 1.21987 0.96245 0.97840 1.01976 1.21431 1.00403 0.97200 0.98411 1.19939 0.94035 1.00203 0.94686 1.21121 1.00347 0.99377 0.92340 1.21429 0.93892 0.99894 0.99146 1.21476 0.95815 0.99297 0.97793 1.21392 1.00331 0.99785 0.92573 1.21229 0.92647 1.00876 1.00026 0.88276 0.87909 0.86674 0.84745 0.93354 0.96167 0.91933 0.93992 0.93794 0.93546 0.86425 0.84240 0.83490 0.83760 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.59 13.56 67.79 0.92 -5.67 16 2 C -0.16 -5.76 9.40 25.65 0.24 -5.52 16 3 C 0.15 5.59 2.54 43.42 0.11 5.70 16 4 H 0.04 1.43 7.06 -2.39 -0.02 1.41 16 5 N -0.67 -27.72 4.20 -481.05 -2.02 -29.74 16 6 C 0.23 11.18 1.26 44.17 0.06 11.23 16 7 H 0.00 0.00 7.47 -2.39 -0.02 -0.02 16 8 C -0.49 -26.28 7.05 25.60 0.18 -26.10 16 9 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 10 C 0.01 0.79 5.28 84.65 0.45 1.24 16 11 N -0.92 -52.59 11.37 21.45 0.24 -52.34 16 12 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 14 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 C -0.14 -6.66 5.50 30.60 0.17 -6.49 16 17 C -0.12 -4.94 9.40 71.98 0.68 -4.27 16 18 C -0.09 -2.74 4.70 -19.87 -0.09 -2.83 16 19 C -0.11 -3.31 8.92 22.27 0.20 -3.12 16 20 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 21 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 22 C -0.12 -2.66 10.05 22.27 0.22 -2.44 16 23 C -0.13 -3.46 9.67 22.27 0.22 -3.24 16 24 H 0.10 3.21 8.06 -2.91 -0.02 3.18 16 25 H 0.10 4.60 5.84 -2.91 -0.02 4.59 16 26 H 0.12 3.53 8.06 -2.91 -0.02 3.50 16 27 H 0.33 13.36 5.60 -89.69 -0.50 12.86 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.02 0.88 7.53 -2.39 -0.02 0.86 16 30 H 0.06 3.36 6.21 -2.39 -0.01 3.35 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 2.03 7.15 -2.39 -0.02 2.01 16 33 H 0.05 1.78 6.34 -2.39 -0.02 1.76 16 34 H 0.12 3.70 7.70 -2.91 -0.02 3.68 16 35 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.12 3.06 8.04 -2.91 -0.02 3.03 16 Total: -1.00 -58.59 307.34 4.57 -54.02 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.53 Total: 28.85 kcal Atomic # 6 Polarization: -50.35 SS G_CDS: 3.79 Total: -46.56 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.78 Total: -82.09 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -58.59 4.57 -54.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.480 kcal (2) G-P(sol) polarization free energy of solvation -58.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds