Wall clock time and date at job start Sun Mar 29 2020 22:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47447 * 2 1 4 4 H 1.08997 * 109.47105 * 302.81258 * 3 2 1 5 5 C 1.50693 * 109.47526 * 182.81010 * 3 2 1 6 6 H 1.08002 * 119.99881 * 240.00049 * 5 3 2 7 7 C 1.37880 * 120.00141 * 59.99860 * 5 3 2 8 8 N 1.31513 * 119.99711 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00216 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47040 * 89.99976 * 9 7 5 11 11 H 1.48491 * 109.47378 * 209.99963 * 9 7 5 12 12 H 1.48505 * 109.47024 * 330.00306 * 9 7 5 13 13 N 1.46901 * 109.46961 * 62.80773 * 3 2 1 14 14 C 1.46848 * 111.00020 * 189.01601 * 13 3 2 15 15 C 1.53041 * 109.52205 * 174.15996 * 14 13 3 16 16 H 1.09002 * 109.50168 * 179.11950 * 15 14 13 17 17 F 1.39895 * 109.50737 * 299.23697 * 15 14 13 18 18 C 1.53121 * 109.27721 * 59.18462 * 15 14 13 19 19 C 1.53118 * 109.15608 * 302.34282 * 18 15 14 20 20 H 1.09007 * 109.50601 * 297.67142 * 19 18 15 21 21 C 1.53002 * 109.50104 * 177.60007 * 19 18 15 22 22 O 1.42896 * 109.47481 * 64.99975 * 21 19 18 23 23 C 1.46848 * 111.00063 * 64.80526 * 13 3 2 24 24 H 1.08998 * 109.47109 * 174.75149 * 1 2 3 25 25 H 1.09006 * 109.47111 * 294.74908 * 1 2 3 26 26 H 1.08999 * 109.46814 * 54.74949 * 1 2 3 27 27 H 1.08998 * 109.47586 * 239.99878 * 2 1 3 28 28 H 1.09007 * 109.47353 * 119.99882 * 2 1 3 29 29 H 0.97003 * 119.99911 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46239 * 54.14771 * 14 13 3 31 31 H 1.09000 * 109.45632 * 294.17274 * 14 13 3 32 32 H 1.09002 * 109.51941 * 182.43895 * 18 15 14 33 33 H 1.08994 * 109.52423 * 62.24838 * 18 15 14 34 34 H 1.09007 * 109.47111 * 304.99435 * 21 19 18 35 35 H 1.08998 * 109.47278 * 184.99856 * 21 19 18 36 36 H 0.96703 * 114.00374 * 180.02562 * 22 21 19 37 37 H 1.09003 * 109.45757 * 65.82246 * 23 13 3 38 38 H 1.08998 * 109.46009 * 305.85943 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6362 1.9707 -0.8637 5 6 3.5454 1.4431 -0.0697 6 1 4.1224 1.8976 0.7221 7 6 4.1861 0.8633 -1.1441 8 7 3.4834 0.3093 -2.1079 9 14 6.0520 0.8634 -1.2301 10 1 6.5779 -0.3605 -0.5737 11 1 6.4821 0.8865 -2.6512 12 1 6.5796 2.0641 -0.5336 13 7 1.6066 2.1151 1.2319 14 6 1.8912 3.5546 1.1737 15 6 1.2979 4.2434 2.4048 16 1 1.5228 5.3094 2.3691 17 9 -0.0886 4.0582 2.4210 18 6 1.9100 3.6340 3.6691 19 6 1.6411 2.1267 3.6812 20 1 0.5662 1.9489 3.7147 21 6 2.3009 1.5000 4.9113 22 8 1.6784 2.0042 6.0946 23 6 2.2243 1.4991 2.4132 24 1 -0.3633 -1.0233 -0.0940 25 1 -0.3634 0.4303 0.9333 26 1 -0.3633 0.5931 -0.8392 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9341 -0.0983 -2.8640 30 1 1.4469 3.9764 0.2722 31 1 2.9697 3.7110 1.1544 32 1 1.4585 4.0917 4.5494 33 1 2.9852 3.8123 3.6757 34 1 3.3613 1.7522 4.9229 35 1 2.1855 0.4168 4.8734 36 1 2.0474 1.6493 6.9150 37 1 3.3013 1.6652 2.3880 38 1 2.0221 0.4280 2.4118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:07 Heat of formation + Delta-G solvation = -131.292129 kcal Electronic energy + Delta-G solvation = -19371.008928 eV Core-core repulsion = 16354.292492 eV Total energy + Delta-G solvation = -3016.716436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 245.153 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.39779 -40.04497 -37.86243 -35.90604 -33.82807 -32.73081 -31.49138 -28.49731 -26.71497 -25.64638 -24.16674 -22.56115 -21.09934 -20.60976 -18.51746 -18.07454 -17.27689 -16.72546 -16.49649 -16.29034 -16.02146 -15.39504 -15.05150 -14.92500 -14.49008 -14.24868 -14.00837 -13.41759 -13.34010 -13.13734 -12.91397 -12.77016 -12.61266 -12.53014 -12.26054 -12.05607 -11.71667 -11.64985 -11.54890 -11.21195 -11.03016 -10.88840 -10.70147 -10.42986 -8.90974 -8.02016 -6.25479 1.38157 1.40477 1.48371 2.40417 3.11373 3.16048 3.57663 3.65531 3.79248 3.92100 3.99285 4.35747 4.44265 4.47991 4.51499 4.65467 4.66959 4.72308 4.75860 4.88289 4.90675 4.94127 4.99720 5.13109 5.21388 5.34111 5.41324 5.45871 5.50549 5.63347 5.79019 6.05398 6.18142 6.37751 6.65045 6.94667 6.97315 7.45723 8.93015 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.007949 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.062659 B = 3521.662838 C = 3803.841483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.222 3.778 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.056 0.944 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.531 5.531 14 C 0.036 3.964 15 C 0.096 3.904 16 H 0.108 0.892 17 F -0.223 7.223 18 C -0.128 4.128 19 C -0.082 4.082 20 H 0.065 0.935 21 C 0.090 3.910 22 O -0.586 6.586 23 C 0.075 3.925 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.396 0.604 37 H 0.030 0.970 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 3.735 12.377 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.115 3.885 4 H 0.020 0.980 5 C -0.589 4.589 6 H 0.074 0.926 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.255 5.255 14 C -0.093 4.093 15 C 0.060 3.940 16 H 0.126 0.874 17 F -0.204 7.204 18 C -0.165 4.165 19 C -0.101 4.101 20 H 0.083 0.917 21 C 0.012 3.988 22 O -0.395 6.395 23 C -0.054 4.054 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.246 0.754 37 H 0.048 0.952 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.569 3.906 11.799 12.527 hybrid contribution 2.107 -0.434 -0.401 2.188 sum 0.538 3.472 11.398 11.927 Atomic orbital electron populations 1.21554 0.96613 0.99515 1.00550 1.21447 0.94157 0.98213 1.00484 1.19046 0.91834 0.91336 0.86297 0.98046 1.21957 0.93627 1.37216 1.06139 0.92624 1.25628 1.01945 0.94929 0.95364 1.70011 1.36485 1.38326 1.10274 0.85724 0.81364 0.78467 0.77074 1.20236 1.21253 1.19498 1.62242 1.58057 1.01708 1.03474 1.22486 0.99032 0.90270 0.97537 1.21817 0.75348 1.00881 0.95960 0.87433 1.92752 1.32943 1.97078 1.97603 1.22088 1.01880 0.95602 0.96963 1.21089 1.00680 0.95259 0.93119 0.91678 1.22022 0.95654 0.97006 0.84166 1.86424 1.64279 1.71911 1.16853 1.21807 0.96035 0.98468 0.89046 0.93594 0.92974 0.94993 0.91813 0.94745 0.92959 0.91974 0.93638 0.89863 0.89694 0.92549 0.92904 0.75393 0.95229 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 9.71 71.98 0.70 -4.47 16 2 C -0.10 -4.98 5.09 30.59 0.16 -4.83 16 3 C 0.22 10.96 1.73 44.17 0.08 11.03 16 4 H 0.00 0.09 8.01 -2.39 -0.02 0.07 16 5 C -0.55 -28.69 7.22 25.60 0.18 -28.50 16 6 H 0.06 2.85 5.84 -2.91 -0.02 2.84 16 7 C 0.02 1.14 5.30 84.66 0.45 1.59 16 8 N -0.91 -51.32 11.30 21.45 0.24 -51.08 16 9 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.53 -22.28 4.00 -875.52 -3.51 -25.79 16 14 C 0.04 1.36 4.93 86.33 0.43 1.78 16 15 C 0.10 2.97 4.17 30.65 0.13 3.10 16 16 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 17 F -0.22 -8.05 16.62 44.97 0.75 -7.30 16 18 C -0.13 -3.58 4.94 30.67 0.15 -3.43 16 19 C -0.08 -2.55 2.46 -10.74 -0.03 -2.57 16 20 H 0.06 2.28 7.91 -2.38 -0.02 2.26 16 21 C 0.09 2.19 6.43 71.98 0.46 2.65 16 22 O -0.59 -13.22 13.25 -148.98 -1.97 -15.19 16 23 C 0.07 2.79 4.07 86.32 0.35 3.14 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 2.09 7.84 -2.38 -0.02 2.07 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 3.42 6.00 -2.39 -0.01 3.40 16 28 H 0.03 1.59 6.27 -2.38 -0.01 1.57 16 29 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.06 2.46 8.03 -2.39 -0.02 2.44 16 31 H 0.05 1.77 7.22 -2.39 -0.02 1.75 16 32 H 0.08 2.21 7.90 -2.39 -0.02 2.19 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.40 4.83 9.12 -74.06 -0.68 4.15 16 37 H 0.03 1.16 6.42 -2.39 -0.02 1.15 16 38 H 0.06 2.48 6.12 -2.39 -0.01 2.47 16 Total: -1.00 -61.11 295.92 0.96 -60.15 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.37 Total: 15.43 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 3.06 Total: -20.51 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -3.26 Total: -76.86 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.97 Total: -15.19 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 0.75 Total: -7.30 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -61.11 0.96 -60.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.142 kcal (2) G-P(sol) polarization free energy of solvation -61.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds