Wall clock time and date at job start Sun Mar 29 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46904 * 109.46661 * 65.00378 * 3 2 1 14 14 C 1.46847 * 110.99995 * 66.04801 * 13 3 2 15 15 C 1.53037 * 109.52476 * 185.83871 * 14 13 3 16 16 H 1.08995 * 109.50218 * 180.87685 * 15 14 13 17 17 F 1.39899 * 109.50406 * 60.79884 * 15 14 13 18 18 C 1.53122 * 109.27786 * 300.81947 * 15 14 13 19 19 C 1.53121 * 109.16061 * 57.65253 * 18 15 14 20 20 H 1.09006 * 109.50467 * 62.28467 * 19 18 15 21 21 C 1.52995 * 109.50664 * 182.36768 * 19 18 15 22 22 O 1.42903 * 109.47026 * 295.00388 * 21 19 18 23 23 C 1.46844 * 110.99749 * 190.25582 * 13 3 2 24 24 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 25 25 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 26 26 H 1.09007 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 28 28 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.46072 * 305.85123 * 14 13 3 31 31 H 1.09000 * 109.46261 * 65.83015 * 14 13 3 32 32 H 1.08997 * 109.52638 * 177.55696 * 18 15 14 33 33 H 1.08998 * 109.52218 * 297.68970 * 18 15 14 34 34 H 1.09006 * 109.47117 * 54.99746 * 21 19 18 35 35 H 1.08997 * 109.47607 * 175.00125 * 21 19 18 36 36 H 0.96701 * 113.99981 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.46494 * 294.17793 * 23 13 3 38 38 H 1.08996 * 109.46274 * 54.14542 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5592 -0.3388 -0.7711 11 1 6.3795 0.9392 -2.8241 12 1 6.5539 2.0849 -0.6939 13 7 1.6514 2.0992 1.2553 14 6 2.3340 1.4873 2.4025 15 6 1.7983 2.0958 3.7005 16 1 2.3161 1.6526 4.5511 17 9 0.4266 1.8412 3.8045 18 6 2.0387 3.6080 3.6869 19 6 1.3583 4.2140 2.4563 20 1 0.2824 4.0495 2.5173 21 6 1.6431 5.7162 2.4029 22 8 1.0335 6.3568 3.5255 23 6 1.9067 3.5440 1.1944 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.8287 -0.0519 -2.9548 30 1 2.1514 0.4127 2.4028 31 1 3.4054 1.6737 2.3293 32 1 1.6199 4.0516 4.5901 33 1 3.1098 3.8061 3.6466 34 1 2.7200 5.8831 2.4301 35 1 1.2343 6.1311 1.4816 36 1 1.1737 7.3131 3.5566 37 1 2.9802 3.7206 1.1267 38 1 1.4139 3.9632 0.3172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:09 Heat of formation + Delta-G solvation = -131.140566 kcal Electronic energy + Delta-G solvation = -19339.661047 eV Core-core repulsion = 16322.951183 eV Total energy + Delta-G solvation = -3016.709864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 245.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.37731 -40.01332 -37.91501 -35.93000 -33.86368 -32.33118 -31.84286 -28.49610 -26.77039 -25.58931 -23.81233 -23.08364 -20.87472 -20.61497 -18.40109 -18.16006 -17.50089 -16.72671 -16.50033 -16.30707 -15.75436 -15.33903 -15.09450 -14.80748 -14.63868 -14.44236 -13.70554 -13.55717 -13.32373 -13.16490 -13.00453 -12.77198 -12.57208 -12.44442 -12.36277 -11.98193 -11.79056 -11.57884 -11.52359 -11.22919 -11.01872 -10.88455 -10.74003 -10.42620 -8.90978 -8.02054 -6.25556 1.38219 1.40561 1.48329 2.40410 3.09135 3.17584 3.58163 3.65956 3.78932 3.93582 4.00731 4.35504 4.42354 4.47390 4.53584 4.61563 4.67119 4.73014 4.74511 4.88905 4.92059 4.94457 4.99227 5.12748 5.26509 5.28645 5.41523 5.45305 5.51525 5.63224 5.78915 6.04609 6.16979 6.38680 6.65230 6.94680 6.96743 7.45661 8.92980 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.022222 B = 0.008063 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.693313 B = 3471.778800 C = 4033.915642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.056 0.944 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.531 5.531 14 C 0.037 3.963 15 C 0.093 3.907 16 H 0.106 0.894 17 F -0.222 7.222 18 C -0.127 4.127 19 C -0.080 4.080 20 H 0.065 0.935 21 C 0.090 3.910 22 O -0.587 6.587 23 C 0.073 3.927 24 H 0.052 0.948 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.397 0.603 37 H 0.028 0.972 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 7.932 9.878 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.590 4.590 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.255 5.255 14 C -0.091 4.091 15 C 0.057 3.943 16 H 0.124 0.876 17 F -0.204 7.204 18 C -0.165 4.165 19 C -0.099 4.099 20 H 0.084 0.916 21 C 0.012 3.988 22 O -0.395 6.395 23 C -0.056 4.056 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.246 0.754 37 H 0.046 0.954 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.804 7.164 9.887 12.342 hybrid contribution 1.934 0.371 -0.942 2.183 sum 0.130 7.535 8.945 11.696 Atomic orbital electron populations 1.21567 0.96669 0.99686 1.00464 1.21447 0.94219 0.98380 1.00309 1.19043 0.92100 0.91399 0.85947 0.97732 1.21963 0.93773 1.37967 1.05286 0.92611 1.25621 1.01778 0.94909 0.95530 1.70006 1.36350 1.38985 1.09727 0.85729 0.81393 0.78448 0.77077 1.20357 1.21197 1.19451 1.62235 1.57024 1.02404 1.03811 1.22513 0.96951 0.99341 0.90334 1.21858 0.76804 0.97141 0.98484 0.87610 1.92751 1.34744 1.95484 1.97373 1.22084 1.01912 0.93432 0.99081 1.21053 1.00690 0.93810 0.94360 0.91623 1.22022 0.96827 0.91455 0.88534 1.86427 1.78590 1.26867 1.47598 1.21788 0.98110 0.88964 0.96690 0.92924 0.94843 0.93665 0.91778 0.94999 0.92950 0.91348 0.93512 0.89881 0.89702 0.92494 0.92860 0.75362 0.95355 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 9.80 71.98 0.71 -4.60 16 2 C -0.11 -5.06 5.17 30.60 0.16 -4.90 16 3 C 0.22 10.95 1.70 44.17 0.08 11.03 16 4 H 0.00 0.26 7.98 -2.39 -0.02 0.25 16 5 C -0.55 -28.73 7.23 25.60 0.19 -28.54 16 6 H 0.06 2.86 5.84 -2.91 -0.02 2.84 16 7 C 0.02 1.15 5.30 84.65 0.45 1.60 16 8 N -0.91 -51.28 11.30 21.45 0.24 -51.04 16 9 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 N -0.53 -22.26 3.99 -875.50 -3.50 -25.76 16 14 C 0.04 1.42 4.54 86.33 0.39 1.81 16 15 C 0.09 2.91 4.17 30.65 0.13 3.03 16 16 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 17 F -0.22 -8.04 16.62 44.97 0.75 -7.29 16 18 C -0.13 -3.57 4.94 30.68 0.15 -3.42 16 19 C -0.08 -2.46 2.46 -10.74 -0.03 -2.49 16 20 H 0.07 2.29 7.91 -2.38 -0.02 2.27 16 21 C 0.09 2.16 6.43 71.98 0.46 2.63 16 22 O -0.59 -13.11 13.24 -148.98 -1.97 -15.09 16 23 C 0.07 2.73 4.48 86.33 0.39 3.11 16 24 H 0.05 2.18 7.75 -2.39 -0.02 2.16 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.06 3.46 5.96 -2.39 -0.01 3.45 16 28 H 0.03 1.50 6.23 -2.39 -0.01 1.48 16 29 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.07 2.74 6.13 -2.39 -0.01 2.73 16 31 H 0.05 1.83 6.36 -2.39 -0.02 1.82 16 32 H 0.08 2.21 7.89 -2.39 -0.02 2.19 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.40 4.75 9.12 -74.06 -0.68 4.07 16 37 H 0.03 1.10 7.31 -2.39 -0.02 1.08 16 38 H 0.06 2.21 8.01 -2.39 -0.02 2.20 16 Total: -1.00 -61.01 295.91 0.98 -60.02 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.37 Total: 15.58 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 3.07 Total: -20.74 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -3.25 Total: -76.80 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.97 Total: -15.09 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.75 Total: -7.29 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -61.01 0.98 -60.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.117 kcal (2) G-P(sol) polarization free energy of solvation -61.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds