Wall clock time and date at job start Sun Mar 29 2020 22:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47340 * 2 1 4 4 H 1.08999 * 109.47791 * 183.51871 * 3 2 1 5 5 C 1.50703 * 109.47094 * 63.51383 * 3 2 1 6 6 H 1.08001 * 119.99961 * 240.00142 * 5 3 2 7 7 C 1.37877 * 119.99659 * 60.00032 * 5 3 2 8 8 N 1.31511 * 120.00398 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99860 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47194 * 90.00688 * 9 7 5 11 11 H 1.48503 * 109.47395 * 210.00760 * 9 7 5 12 12 H 1.48500 * 109.47274 * 330.00760 * 9 7 5 13 13 N 1.46900 * 109.46919 * 303.52176 * 3 2 1 14 14 C 1.44274 * 111.00213 * 179.00573 * 13 3 2 15 15 C 1.54068 * 111.91558 * 219.34079 * 14 13 3 16 16 C 1.54225 * 112.32610 * 318.78718 * 15 14 13 17 17 H 1.08999 * 108.61077 * 79.25536 * 16 15 14 18 18 O 1.42892 * 108.80118 * 197.47000 * 16 15 14 19 19 C 1.50467 * 113.06734 * 318.43155 * 16 15 14 20 20 H 1.08993 * 109.57649 * 332.27667 * 19 16 15 21 21 F 1.39902 * 109.67600 * 211.96353 * 19 16 15 22 22 C 1.54506 * 108.85087 * 92.09190 * 19 16 15 23 23 C 1.45864 * 111.58931 * 282.80712 * 22 19 16 24 24 H 1.08996 * 109.47088 * 64.86831 * 1 2 3 25 25 H 1.08998 * 109.46823 * 184.87062 * 1 2 3 26 26 H 1.08998 * 109.46812 * 304.86271 * 1 2 3 27 27 H 1.09002 * 109.47259 * 239.99875 * 2 1 3 28 28 H 1.08999 * 109.46971 * 119.99867 * 2 1 3 29 29 H 0.96998 * 120.00511 * 179.97438 * 8 7 5 30 30 H 1.09001 * 108.97270 * 339.93963 * 14 13 3 31 31 H 1.08998 * 108.98066 * 98.73316 * 14 13 3 32 32 H 1.09004 * 108.91667 * 79.58849 * 15 14 13 33 33 H 1.09000 * 108.91669 * 198.13788 * 15 14 13 34 34 H 0.96707 * 114.00120 * 183.56196 * 18 16 15 35 35 H 1.09000 * 109.05594 * 162.26639 * 22 19 16 36 36 H 1.08991 * 108.99644 * 43.31424 * 22 19 16 37 37 H 1.08998 * 108.79666 * 300.43947 * 23 22 19 38 38 H 1.09007 * 108.78789 * 182.21467 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1283 1.4432 -0.0631 5 6 1.6101 2.1273 1.2717 6 1 0.9851 3.0069 1.2266 7 6 2.0148 1.6309 2.4927 8 7 2.7763 0.5601 2.5476 9 14 1.4824 2.4802 4.0690 10 1 0.1994 1.8967 4.5367 11 1 2.5228 2.2872 5.1110 12 1 1.3019 3.9317 3.8127 13 7 1.4822 2.1591 -1.1546 14 6 1.9244 3.5322 -1.1740 15 6 0.8012 4.4920 -1.6107 16 6 -0.0304 3.9270 -2.7803 17 1 -0.7411 3.2020 -2.3834 18 8 -0.7570 4.9969 -3.3878 19 6 0.8109 3.2549 -3.8312 20 1 1.8073 3.6965 -3.8389 21 9 0.2159 3.4189 -5.0868 22 6 0.9144 1.7493 -3.5002 23 6 1.8646 1.5010 -2.4217 24 1 -0.3633 0.4364 -0.9303 25 1 -0.3633 -1.0240 0.0873 26 1 -0.3633 0.5874 0.8432 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.0613 0.2111 3.4066 30 1 2.2600 3.8105 -0.1749 31 1 2.7602 3.6258 -1.8673 32 1 0.1414 4.6733 -0.7622 33 1 1.2452 5.4384 -1.9195 34 1 -1.3486 4.7164 -4.0995 35 1 1.2382 1.2105 -4.3907 36 1 -0.0676 1.3835 -3.2005 37 1 2.8449 1.8677 -2.7259 38 1 1.9311 0.4261 -2.2529 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:00 Heat of formation + Delta-G solvation = -100.507397 kcal Electronic energy + Delta-G solvation = -19514.857088 eV Core-core repulsion = 16499.475577 eV Total energy + Delta-G solvation = -3015.381510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 245.153 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.59559 -38.90065 -36.60946 -34.19879 -32.03464 -31.75695 -30.22466 -26.79378 -25.09783 -24.24892 -22.89496 -21.03040 -19.69720 -18.86664 -17.46885 -16.54450 -16.08839 -15.61397 -15.13396 -14.79041 -14.26706 -13.86322 -13.55280 -13.50601 -13.21338 -12.69675 -12.37571 -12.04897 -11.80171 -11.76643 -11.35662 -11.14314 -10.96843 -10.88463 -10.58094 -10.41026 -10.16194 -10.12093 -9.95383 -9.67080 -9.57221 -9.39011 -8.87437 -8.45373 -7.30097 -6.06297 -4.10317 3.27572 3.34828 3.37586 4.31690 4.34807 4.57786 4.67943 5.01390 5.04757 5.17537 5.25942 5.51392 5.59787 5.77479 5.87910 5.92669 6.07340 6.25117 6.33912 6.36478 6.40010 6.48758 6.54934 6.62240 6.69724 6.75394 7.07757 7.23278 7.34863 7.60060 7.69290 7.78229 7.79407 8.14776 8.28244 8.49949 8.95640 9.54143 10.99816 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.030736 B = 0.007440 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.779069 B = 3762.741540 C = 4249.758682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.217 3.783 4 H -0.001 1.001 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.522 5.522 14 C 0.056 3.944 15 C -0.096 4.096 16 C 0.093 3.907 17 H 0.070 0.930 18 O -0.570 6.570 19 C 0.063 3.937 20 H 0.083 0.917 21 F -0.217 7.217 22 C -0.130 4.130 23 C 0.040 3.960 24 H 0.039 0.961 25 H 0.015 0.985 26 H 0.059 0.941 27 H 0.015 0.985 28 H 0.094 0.906 29 H 0.261 0.739 30 H 0.094 0.906 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.375 0.625 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.026 0.974 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 2.584 -9.686 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.537 4.537 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.246 5.246 14 C -0.074 4.074 15 C -0.134 4.134 16 C 0.034 3.966 17 H 0.088 0.912 18 O -0.376 6.376 19 C 0.027 3.973 20 H 0.101 0.899 21 F -0.198 7.198 22 C -0.168 4.168 23 C -0.088 4.088 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.223 0.777 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.044 0.956 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.079 2.804 -9.073 9.983 hybrid contribution 0.302 -0.008 0.305 0.429 sum -2.777 2.796 -8.768 9.613 Atomic orbital electron populations 1.21462 0.97279 0.97681 1.01374 1.21631 0.95134 0.98223 1.00178 1.19341 0.92291 0.90735 0.86466 0.98349 1.21049 1.31027 1.12055 0.89608 0.91845 1.24892 0.95093 0.95053 0.98996 1.69864 1.35613 1.22322 1.25238 0.86573 0.78255 0.79964 0.83084 1.20694 1.21394 1.19899 1.61763 1.59854 1.01220 1.01775 1.21871 0.93561 0.89823 1.02120 1.21860 0.97760 0.98107 0.95722 1.22133 0.93810 0.88880 0.91821 0.91188 1.86472 1.60760 1.35821 1.54588 1.22145 0.97839 0.98147 0.79187 0.89942 1.92721 1.86218 1.96784 1.44098 1.21125 1.02742 0.93743 0.99192 1.21007 0.95418 1.01404 0.90991 0.94229 0.96544 0.92212 0.96687 0.88781 0.92940 0.88816 0.95906 0.90824 0.92010 0.77734 0.91106 0.90333 0.95570 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 9.51 37.16 0.35 -2.15 16 2 C -0.11 -2.55 5.13 -26.73 -0.14 -2.69 16 3 C 0.22 5.02 1.66 -68.86 -0.11 4.91 16 4 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 5 C -0.50 -12.61 6.24 -34.44 -0.21 -12.83 16 6 H 0.06 1.62 7.15 -52.49 -0.38 1.24 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -24.24 11.30 55.43 0.63 -23.61 16 9 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.52 -10.05 3.26 -232.93 -0.76 -10.80 16 14 C 0.06 1.01 4.71 -4.67 -0.02 0.99 16 15 C -0.10 -1.58 5.77 -25.53 -0.15 -1.73 16 16 C 0.09 1.43 3.02 -27.35 -0.08 1.35 16 17 H 0.07 1.14 7.38 -51.93 -0.38 0.76 16 18 O -0.57 -8.60 13.00 -35.23 -0.46 -9.06 16 19 C 0.06 0.92 3.43 -27.21 -0.09 0.82 16 20 H 0.08 1.20 7.15 -51.93 -0.37 0.83 16 21 F -0.22 -3.17 15.76 2.25 0.04 -3.14 16 22 C -0.13 -1.86 5.28 -29.32 -0.15 -2.01 16 23 C 0.04 0.66 4.72 -6.70 -0.03 0.63 16 24 H 0.04 0.77 7.62 -51.93 -0.40 0.37 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 1.36 7.18 -51.93 -0.37 0.99 16 27 H 0.01 0.31 6.10 -51.93 -0.32 -0.01 16 28 H 0.09 2.40 5.98 -51.93 -0.31 2.09 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.09 1.91 6.14 -51.93 -0.32 1.59 16 31 H 0.02 0.39 6.50 -51.93 -0.34 0.05 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.38 4.45 8.14 45.56 0.37 4.82 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 37 H 0.03 0.43 7.24 -51.93 -0.38 0.05 16 38 H 0.08 1.40 5.40 -51.93 -0.28 1.12 16 LS Contribution 287.53 15.07 4.33 4.33 Total: -1.00 -26.61 287.53 -7.09 -33.70 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.11 Total: 4.22 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.74 Total: -11.21 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: -0.13 Total: -34.42 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.46 Total: -9.06 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.61 -7.09 -33.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.807 kcal (2) G-P(sol) polarization free energy of solvation -26.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds