Wall clock time and date at job start Sun Mar 29 2020 22:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47340 * 2 1 4 4 H 1.08999 * 109.47791 * 183.51871 * 3 2 1 5 5 C 1.50703 * 109.47094 * 63.51383 * 3 2 1 6 6 H 1.08001 * 119.99961 * 240.00142 * 5 3 2 7 7 C 1.37877 * 119.99659 * 60.00032 * 5 3 2 8 8 N 1.31511 * 120.00398 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99860 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47194 * 90.00688 * 9 7 5 11 11 H 1.48503 * 109.47395 * 210.00760 * 9 7 5 12 12 H 1.48500 * 109.47274 * 330.00760 * 9 7 5 13 13 N 1.46900 * 109.46919 * 303.52176 * 3 2 1 14 14 C 1.44274 * 111.00213 * 179.00573 * 13 3 2 15 15 C 1.54068 * 111.91558 * 219.34079 * 14 13 3 16 16 C 1.54225 * 112.32610 * 318.78718 * 15 14 13 17 17 H 1.08999 * 108.61077 * 79.25536 * 16 15 14 18 18 O 1.42892 * 108.80118 * 197.47000 * 16 15 14 19 19 C 1.50467 * 113.06734 * 318.43155 * 16 15 14 20 20 H 1.08993 * 109.57649 * 332.27667 * 19 16 15 21 21 F 1.39902 * 109.67600 * 211.96353 * 19 16 15 22 22 C 1.54506 * 108.85087 * 92.09190 * 19 16 15 23 23 C 1.45864 * 111.58931 * 282.80712 * 22 19 16 24 24 H 1.08996 * 109.47088 * 64.86831 * 1 2 3 25 25 H 1.08998 * 109.46823 * 184.87062 * 1 2 3 26 26 H 1.08998 * 109.46812 * 304.86271 * 1 2 3 27 27 H 1.09002 * 109.47259 * 239.99875 * 2 1 3 28 28 H 1.08999 * 109.46971 * 119.99867 * 2 1 3 29 29 H 0.96998 * 120.00511 * 179.97438 * 8 7 5 30 30 H 1.09001 * 108.97270 * 339.93963 * 14 13 3 31 31 H 1.08998 * 108.98066 * 98.73316 * 14 13 3 32 32 H 1.09004 * 108.91667 * 79.58849 * 15 14 13 33 33 H 1.09000 * 108.91669 * 198.13788 * 15 14 13 34 34 H 0.96707 * 114.00120 * 183.56196 * 18 16 15 35 35 H 1.09000 * 109.05594 * 162.26639 * 22 19 16 36 36 H 1.08991 * 108.99644 * 43.31424 * 22 19 16 37 37 H 1.08998 * 108.79666 * 300.43947 * 23 22 19 38 38 H 1.09007 * 108.78789 * 182.21467 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1283 1.4432 -0.0631 5 6 1.6101 2.1273 1.2717 6 1 0.9851 3.0069 1.2266 7 6 2.0148 1.6309 2.4927 8 7 2.7763 0.5601 2.5476 9 14 1.4824 2.4802 4.0690 10 1 0.1994 1.8967 4.5367 11 1 2.5228 2.2872 5.1110 12 1 1.3019 3.9317 3.8127 13 7 1.4822 2.1591 -1.1546 14 6 1.9244 3.5322 -1.1740 15 6 0.8012 4.4920 -1.6107 16 6 -0.0304 3.9270 -2.7803 17 1 -0.7411 3.2020 -2.3834 18 8 -0.7570 4.9969 -3.3878 19 6 0.8109 3.2549 -3.8312 20 1 1.8073 3.6965 -3.8389 21 9 0.2159 3.4189 -5.0868 22 6 0.9144 1.7493 -3.5002 23 6 1.8646 1.5010 -2.4217 24 1 -0.3633 0.4364 -0.9303 25 1 -0.3633 -1.0240 0.0873 26 1 -0.3633 0.5874 0.8432 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.0613 0.2111 3.4066 30 1 2.2600 3.8105 -0.1749 31 1 2.7602 3.6258 -1.8673 32 1 0.1414 4.6733 -0.7622 33 1 1.2452 5.4384 -1.9195 34 1 -1.3486 4.7164 -4.0995 35 1 1.2382 1.2105 -4.3907 36 1 -0.0676 1.3835 -3.2005 37 1 2.8449 1.8677 -2.7259 38 1 1.9311 0.4261 -2.2529 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:00 Heat of formation + Delta-G solvation = -117.534995 kcal Electronic energy + Delta-G solvation = -19515.595460 eV Core-core repulsion = 16499.475577 eV Total energy + Delta-G solvation = -3016.119882 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 245.153 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.73850 -40.34439 -37.94948 -35.81402 -33.56191 -33.39094 -31.75078 -28.53836 -26.65038 -25.67444 -24.55192 -22.45195 -21.08719 -20.48047 -18.67780 -18.11961 -17.76434 -16.88864 -16.68482 -16.25641 -15.68473 -15.46200 -15.16732 -14.83816 -14.59858 -14.13089 -13.90838 -13.74666 -13.26934 -13.12870 -12.81344 -12.72279 -12.55821 -12.44697 -12.31117 -12.11747 -11.74512 -11.62758 -11.46948 -11.25545 -11.10909 -10.82999 -10.67000 -10.40885 -8.90940 -8.06374 -6.15052 1.42449 1.45192 1.53026 2.44309 3.13773 3.19465 3.26423 3.44565 3.73208 3.85491 3.96500 4.21572 4.25754 4.46159 4.53286 4.62193 4.70388 4.76735 4.77499 4.94887 4.97614 5.09384 5.11109 5.20903 5.24082 5.30000 5.36245 5.48594 5.54036 5.77477 5.82172 5.93829 6.36768 6.48787 6.75855 6.76595 6.99208 7.52427 8.98663 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.030736 B = 0.007440 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.779069 B = 3762.741540 C = 4249.758682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C 0.224 3.776 4 H -0.037 1.037 5 C -0.500 4.500 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.522 5.522 14 C 0.058 3.942 15 C -0.090 4.090 16 C 0.098 3.902 17 H 0.063 0.937 18 O -0.579 6.579 19 C 0.070 3.930 20 H 0.086 0.914 21 F -0.215 7.215 22 C -0.123 4.123 23 C 0.041 3.959 24 H 0.054 0.946 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.259 0.741 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.390 0.610 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 2.942 -11.111 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C 0.118 3.882 4 H -0.020 1.020 5 C -0.539 4.539 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.558 5.558 9 Si 0.773 3.227 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.247 5.247 14 C -0.071 4.071 15 C -0.128 4.128 16 C 0.039 3.961 17 H 0.081 0.919 18 O -0.387 6.387 19 C 0.033 3.967 20 H 0.104 0.896 21 F -0.196 7.196 22 C -0.161 4.161 23 C -0.086 4.086 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.240 0.760 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.926 3.173 -10.523 11.671 hybrid contribution 0.573 -0.091 0.683 0.896 sum -3.354 3.083 -9.839 10.843 Atomic orbital electron populations 1.21321 0.95787 0.98440 1.01006 1.21504 0.96325 0.97485 0.99505 1.19093 0.90151 0.91569 0.87414 1.02000 1.21259 1.30210 1.11655 0.90739 0.92507 1.25536 0.95407 0.95668 1.01623 1.69990 1.36785 1.23482 1.25566 0.85728 0.77717 0.79201 0.80020 1.20545 1.21418 1.19460 1.61732 1.59470 1.01568 1.01880 1.21809 0.94781 0.89533 1.00968 1.21726 0.97098 0.98071 0.95926 1.21977 0.93652 0.88712 0.91776 0.91928 1.86435 1.61167 1.35825 1.55293 1.22028 0.97684 0.98058 0.78899 0.89602 1.92731 1.86206 1.96770 1.43852 1.21044 1.02066 0.93934 0.99073 1.21059 0.96501 1.00827 0.90222 0.92699 0.94821 0.94695 0.94851 0.91982 0.93174 0.91630 0.94587 0.92149 0.90880 0.75999 0.88723 0.90317 0.95028 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 9.51 71.98 0.68 -3.70 16 2 C -0.11 -4.92 5.13 30.60 0.16 -4.77 16 3 C 0.22 10.48 1.66 44.17 0.07 10.55 16 4 H -0.04 -1.99 8.14 -2.39 -0.02 -2.01 16 5 C -0.50 -25.68 6.24 25.60 0.16 -25.53 16 6 H 0.06 2.94 7.15 -2.91 -0.02 2.92 16 7 C 0.02 0.86 5.30 84.66 0.45 1.31 16 8 N -0.92 -51.01 11.30 21.45 0.24 -50.77 16 9 Si 0.95 42.68 29.54 68.60 2.03 44.70 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 13 N -0.52 -19.72 3.26 -890.85 -2.90 -22.62 16 14 C 0.06 2.09 4.71 87.15 0.41 2.50 16 15 C -0.09 -2.84 5.77 31.37 0.18 -2.66 16 16 C 0.10 2.81 3.02 30.19 0.09 2.90 16 17 H 0.06 1.90 7.38 -2.39 -0.02 1.88 16 18 O -0.58 -16.00 13.00 -148.98 -1.94 -17.94 16 19 C 0.07 1.82 3.43 30.29 0.10 1.92 16 20 H 0.09 2.22 7.15 -2.39 -0.02 2.21 16 21 F -0.21 -5.55 15.76 44.97 0.71 -4.84 16 22 C -0.12 -3.14 5.28 28.92 0.15 -2.99 16 23 C 0.04 1.29 4.72 83.94 0.40 1.69 16 24 H 0.05 2.02 7.62 -2.39 -0.02 2.00 16 25 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.03 1.56 7.18 -2.39 -0.02 1.54 16 27 H 0.03 1.34 6.10 -2.39 -0.01 1.33 16 28 H 0.06 3.21 5.98 -2.39 -0.01 3.20 16 29 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.07 2.71 6.14 -2.39 -0.01 2.70 16 31 H 0.04 1.18 6.50 -2.39 -0.02 1.17 16 32 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.39 8.16 8.14 -74.05 -0.60 7.56 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.05 7.58 -2.39 -0.02 2.03 16 37 H 0.03 0.96 7.24 -2.39 -0.02 0.94 16 38 H 0.08 2.49 5.40 -2.38 -0.01 2.48 16 Total: -1.00 -56.41 287.53 1.45 -54.96 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.45 Total: 15.27 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 2.86 Total: -18.76 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -2.66 Total: -73.39 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.94 Total: -17.94 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.71 Total: -4.84 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -56.41 1.45 -54.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.575 kcal (2) G-P(sol) polarization free energy of solvation -56.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds