Wall clock time and date at job start Sun Mar 29 2020 22:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47190 * 2 1 4 4 C 1.50705 * 109.47113 * 240.00179 * 2 1 3 5 5 H 1.07991 * 120.00008 * 240.00074 * 4 2 1 6 6 C 1.37879 * 119.99809 * 60.00189 * 4 2 1 7 7 N 1.31515 * 120.00258 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46801 * 89.99511 * 8 6 4 10 10 H 1.48490 * 109.46882 * 209.99737 * 8 6 4 11 11 H 1.48498 * 109.46857 * 329.99887 * 8 6 4 12 12 N 1.46900 * 109.47533 * 120.00448 * 2 1 3 13 13 C 1.46904 * 110.99658 * 274.99918 * 12 2 1 14 14 C 1.50696 * 109.47036 * 179.97438 * 13 12 2 15 15 C 1.38253 * 119.99941 * 89.99819 * 14 13 12 16 16 C 1.38215 * 120.00294 * 180.02562 * 15 14 13 17 17 C 1.38256 * 119.99734 * 359.97438 * 16 15 14 18 18 C 1.38217 * 120.00088 * 0.02885 * 17 16 15 19 19 C 1.50701 * 120.00007 * 179.97438 * 18 17 16 20 20 C 1.52997 * 117.50064 * 8.62298 * 19 18 17 21 21 C 1.53000 * 117.49935 * 299.99893 * 19 18 17 22 22 C 1.38212 * 120.00198 * 270.02577 * 14 13 12 23 23 H 1.08998 * 109.47190 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47142 * 299.99455 * 1 2 3 25 25 H 1.08997 * 109.47306 * 59.99575 * 1 2 3 26 26 H 0.97000 * 120.00169 * 179.97438 * 7 6 4 27 27 H 1.00899 * 110.99979 * 151.04406 * 12 2 1 28 28 H 1.09005 * 109.46843 * 60.00098 * 13 12 2 29 29 H 1.08998 * 109.47257 * 299.99490 * 13 12 2 30 30 H 1.08000 * 120.00399 * 0.02562 * 15 14 13 31 31 H 1.07995 * 120.00164 * 179.70679 * 16 15 14 32 32 H 1.08001 * 120.00211 * 180.02562 * 17 16 15 33 33 H 1.09000 * 115.55153 * 154.32800 * 19 18 17 34 34 H 1.09007 * 117.49656 * 359.97438 * 20 19 18 35 35 H 1.08999 * 117.50560 * 145.01792 * 20 19 18 36 36 H 1.09004 * 117.49408 * 214.97840 * 21 19 18 37 37 H 1.08993 * 117.50096 * 359.97438 * 21 19 18 38 38 H 1.08000 * 119.99961 * 359.97326 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7124 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3468 14 6 2.5875 -0.5219 3.5559 15 6 3.9438 -0.5746 3.8186 16 6 4.4070 -1.2578 4.9272 17 6 3.5140 -1.8880 5.7737 18 6 2.1580 -1.8354 5.5111 19 6 1.1846 -2.5229 6.4336 20 6 1.7330 -3.0877 7.7455 21 6 1.3299 -4.0353 6.6139 22 6 1.6947 -1.1525 4.4019 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.7087 1.1614 -3.4844 27 1 2.9173 -1.1206 1.0285 28 1 1.0871 0.6162 2.5525 29 1 2.7589 1.0461 2.1182 30 1 4.6415 -0.0819 3.1576 31 1 5.4669 -1.3029 5.1298 32 1 3.8758 -2.4215 6.6403 33 1 0.1762 -2.1092 6.4459 34 1 2.7980 -2.9623 7.9412 35 1 1.0855 -3.0455 8.6213 36 1 0.4171 -4.6165 6.7453 37 1 2.1293 -4.5331 6.0651 38 1 0.6352 -1.1113 4.1967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658517287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:49 Heat of formation + Delta-G solvation = 40.210487 kcal Electronic energy + Delta-G solvation = -16876.140018 eV Core-core repulsion = 14297.629718 eV Total energy + Delta-G solvation = -2578.510300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.60742 -37.07943 -35.60782 -32.84756 -30.93473 -30.55611 -28.02635 -25.37604 -24.40304 -23.42402 -22.53633 -21.71207 -19.80232 -19.40136 -16.95653 -16.38569 -15.79889 -15.09827 -14.74981 -14.37447 -14.14781 -13.69794 -13.53531 -13.12625 -12.46975 -12.45753 -12.12664 -11.73704 -11.69057 -11.33400 -11.05022 -10.89900 -10.78411 -10.68946 -10.58505 -10.46114 -10.22704 -10.12574 -9.89998 -8.84630 -8.53812 -8.46938 -8.32822 -7.25601 -6.02351 -4.08814 1.50992 1.62247 3.30365 3.36570 3.39805 3.63839 4.10756 4.41261 4.52129 4.78014 4.90850 4.99635 5.11375 5.23762 5.28713 5.31757 5.50961 5.57365 5.64616 5.72210 5.75241 5.96941 5.99597 6.01508 6.15871 6.33099 6.35931 6.66363 6.75837 6.86795 6.98111 7.14543 7.22151 7.23754 7.50472 7.78556 7.90018 8.27733 8.39231 8.67003 9.01758 9.57142 11.03963 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.034758 B = 0.004248 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.384947 B = 6589.243683 C = 6714.353746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.095 3.905 14 C -0.061 4.061 15 C -0.120 4.120 16 C -0.119 4.119 17 C -0.132 4.132 18 C -0.057 4.057 19 C -0.113 4.113 20 C -0.180 4.180 21 C -0.170 4.170 22 C -0.093 4.093 23 H 0.031 0.969 24 H 0.004 0.996 25 H 0.081 0.919 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -4.607 17.412 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.019 0.981 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.035 4.035 14 C -0.062 4.062 15 C -0.139 4.139 16 C -0.137 4.137 17 C -0.150 4.150 18 C -0.057 4.057 19 C -0.131 4.131 20 C -0.217 4.217 21 C -0.207 4.207 22 C -0.112 4.112 23 H 0.050 0.950 24 H 0.023 0.977 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.271 -4.719 17.412 18.183 hybrid contribution 1.044 0.104 -1.144 1.552 sum 3.314 -4.615 16.268 17.232 Atomic orbital electron populations 1.21712 0.97844 0.99354 0.99330 1.19140 0.92678 0.92365 0.85534 0.98105 1.21263 1.31464 1.12493 0.90432 0.92216 1.24919 0.95056 0.94982 0.99033 1.69898 1.36669 1.22890 1.23457 0.86516 0.79232 0.79329 0.82436 1.20601 1.21275 1.19932 1.60793 1.32218 1.32702 1.05559 1.20916 0.99884 0.93331 0.89335 1.20039 0.93065 0.97175 0.95871 1.21087 0.95255 1.00039 0.97510 1.21009 0.99133 0.98313 0.95245 1.20900 0.92773 1.01275 1.00019 1.19073 0.93078 0.98241 0.95342 1.21016 0.99155 0.95578 0.97322 1.23049 1.01867 1.04540 0.92234 1.23008 1.03485 0.91948 1.02218 1.20829 0.99887 0.96958 0.93480 0.94956 0.97732 0.90087 0.92927 0.85149 0.90999 0.95366 0.86354 0.86488 0.86596 0.87072 0.88495 0.88685 0.88583 0.88578 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.19 37.15 0.34 -2.79 16 2 C 0.21 5.40 2.60 -68.86 -0.18 5.22 16 3 H 0.00 0.04 7.80 -51.93 -0.40 -0.37 16 4 C -0.52 -14.37 8.59 -34.44 -0.30 -14.67 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.68 -14.92 6.29 -109.22 -0.69 -15.61 16 13 C 0.09 1.76 5.61 -4.98 -0.03 1.73 16 14 C -0.06 -0.99 5.39 -104.63 -0.56 -1.56 16 15 C -0.12 -1.77 9.70 -39.58 -0.38 -2.15 16 16 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 17 C -0.13 -1.65 9.30 -39.58 -0.37 -2.02 16 18 C -0.06 -0.77 5.61 -104.62 -0.59 -1.35 16 19 C -0.11 -1.25 6.04 -91.77 -0.55 -1.80 16 20 C -0.18 -1.61 9.86 -26.73 -0.26 -1.88 16 21 C -0.17 -1.65 10.16 -26.73 -0.27 -1.93 16 22 C -0.09 -1.42 9.39 -39.58 -0.37 -1.79 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 25 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.33 7.19 8.22 -39.29 -0.32 6.86 16 28 H 0.07 1.35 7.38 -51.93 -0.38 0.96 16 29 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.20 6.02 -52.49 -0.32 0.88 16 33 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.10 0.82 6.18 -51.93 -0.32 0.50 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -28.91 313.20 -10.16 -39.08 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.78 Total: 5.68 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -4.02 Total: -25.29 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.06 Total: -40.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.91 -10.16 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.287 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds