Wall clock time and date at job start Sun Mar 29 2020 22:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47190 * 2 1 4 4 C 1.50705 * 109.47113 * 240.00179 * 2 1 3 5 5 H 1.07991 * 120.00008 * 240.00074 * 4 2 1 6 6 C 1.37879 * 119.99809 * 60.00189 * 4 2 1 7 7 N 1.31515 * 120.00258 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46801 * 89.99511 * 8 6 4 10 10 H 1.48490 * 109.46882 * 209.99737 * 8 6 4 11 11 H 1.48498 * 109.46857 * 329.99887 * 8 6 4 12 12 N 1.46900 * 109.47533 * 120.00448 * 2 1 3 13 13 C 1.46904 * 110.99658 * 274.99918 * 12 2 1 14 14 C 1.50696 * 109.47036 * 179.97438 * 13 12 2 15 15 C 1.38253 * 119.99941 * 89.99819 * 14 13 12 16 16 C 1.38215 * 120.00294 * 180.02562 * 15 14 13 17 17 C 1.38256 * 119.99734 * 359.97438 * 16 15 14 18 18 C 1.38217 * 120.00088 * 0.02885 * 17 16 15 19 19 C 1.50701 * 120.00007 * 179.97438 * 18 17 16 20 20 C 1.52997 * 117.50064 * 8.62298 * 19 18 17 21 21 C 1.53000 * 117.49935 * 299.99893 * 19 18 17 22 22 C 1.38212 * 120.00198 * 270.02577 * 14 13 12 23 23 H 1.08998 * 109.47190 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47142 * 299.99455 * 1 2 3 25 25 H 1.08997 * 109.47306 * 59.99575 * 1 2 3 26 26 H 0.97000 * 120.00169 * 179.97438 * 7 6 4 27 27 H 1.00899 * 110.99979 * 151.04406 * 12 2 1 28 28 H 1.09005 * 109.46843 * 60.00098 * 13 12 2 29 29 H 1.08998 * 109.47257 * 299.99490 * 13 12 2 30 30 H 1.08000 * 120.00399 * 0.02562 * 15 14 13 31 31 H 1.07995 * 120.00164 * 179.70679 * 16 15 14 32 32 H 1.08001 * 120.00211 * 180.02562 * 17 16 15 33 33 H 1.09000 * 115.55153 * 154.32800 * 19 18 17 34 34 H 1.09007 * 117.49656 * 359.97438 * 20 19 18 35 35 H 1.08999 * 117.50560 * 145.01792 * 20 19 18 36 36 H 1.09004 * 117.49408 * 214.97840 * 21 19 18 37 37 H 1.08993 * 117.50096 * 359.97438 * 21 19 18 38 38 H 1.08000 * 119.99961 * 359.97326 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7124 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3468 14 6 2.5875 -0.5219 3.5559 15 6 3.9438 -0.5746 3.8186 16 6 4.4070 -1.2578 4.9272 17 6 3.5140 -1.8880 5.7737 18 6 2.1580 -1.8354 5.5111 19 6 1.1846 -2.5229 6.4336 20 6 1.7330 -3.0877 7.7455 21 6 1.3299 -4.0353 6.6139 22 6 1.6947 -1.1525 4.4019 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.7087 1.1614 -3.4844 27 1 2.9173 -1.1206 1.0285 28 1 1.0871 0.6162 2.5525 29 1 2.7589 1.0461 2.1182 30 1 4.6415 -0.0819 3.1576 31 1 5.4669 -1.3029 5.1298 32 1 3.8758 -2.4215 6.6403 33 1 0.1762 -2.1092 6.4459 34 1 2.7980 -2.9623 7.9412 35 1 1.0855 -3.0455 8.6213 36 1 0.4171 -4.6165 6.7453 37 1 2.1293 -4.5331 6.0651 38 1 0.6352 -1.1113 4.1967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658517287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:48 Heat of formation + Delta-G solvation = 24.981579 kcal Electronic energy + Delta-G solvation = -16876.800393 eV Core-core repulsion = 14297.629718 eV Total energy + Delta-G solvation = -2579.170675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65665 -38.23429 -37.17642 -34.69591 -32.46127 -31.64412 -29.75147 -27.41736 -25.91171 -24.47654 -23.32722 -22.75886 -21.77860 -20.51223 -18.60791 -17.72882 -17.00844 -16.73981 -16.14386 -15.56334 -15.53005 -15.33117 -14.76351 -14.63887 -14.02725 -13.64651 -13.50786 -13.20056 -13.00708 -12.84921 -12.67626 -12.49348 -12.25756 -12.21910 -12.07875 -11.83175 -11.73917 -11.46821 -11.18283 -10.91813 -10.59205 -9.67778 -9.40178 -9.06775 -8.14795 -6.29485 0.42613 0.52005 1.41713 1.42762 1.53084 2.40547 2.69847 3.13518 3.18032 3.63541 3.74755 3.94583 4.04356 4.10565 4.21005 4.22616 4.27592 4.45929 4.55669 4.71329 4.77851 4.83254 4.85975 5.00426 5.05044 5.14834 5.17113 5.18985 5.24257 5.29202 5.43835 5.59415 5.64515 5.71155 5.79568 5.83358 6.14278 6.19794 6.43628 6.72829 6.95798 7.40968 8.90969 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.034758 B = 0.004248 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.384947 B = 6589.243683 C = 6714.353746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H -0.029 1.029 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.679 5.679 13 C 0.101 3.899 14 C -0.080 4.080 15 C -0.133 4.133 16 C -0.115 4.115 17 C -0.129 4.129 18 C -0.057 4.057 19 C -0.136 4.136 20 C -0.162 4.162 21 C -0.169 4.169 22 C -0.111 4.111 23 H 0.027 0.973 24 H 0.021 0.979 25 H 0.058 0.942 26 H 0.263 0.737 27 H 0.332 0.668 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.121 0.879 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -6.086 18.918 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.011 1.011 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.192 1.192 12 N -0.310 5.310 13 C -0.028 4.028 14 C -0.080 4.080 15 C -0.152 4.152 16 C -0.133 4.133 17 C -0.147 4.147 18 C -0.057 4.057 19 C -0.154 4.154 20 C -0.198 4.198 21 C -0.206 4.206 22 C -0.130 4.130 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.139 0.861 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.293 -6.202 18.939 20.199 hybrid contribution 0.725 0.563 -1.509 1.766 sum 4.018 -5.639 17.430 18.755 Atomic orbital electron populations 1.21536 0.97651 0.98829 0.99065 1.18963 0.92836 0.90864 0.86801 1.01147 1.21568 1.31863 1.12727 0.91602 0.92364 1.25744 0.95110 0.95646 1.02054 1.70022 1.37393 1.24026 1.24256 0.85463 0.78867 0.78201 0.78530 1.20097 1.20731 1.19177 1.60705 1.32237 1.33012 1.05002 1.20843 0.99622 0.93047 0.89314 1.19836 0.94147 0.98590 0.95452 1.21207 0.94554 1.00812 0.98612 1.21343 1.00790 0.97005 0.94136 1.21269 0.92278 1.00579 1.00555 1.19331 0.94197 0.97386 0.94788 1.21059 0.99005 0.96524 0.98813 1.23164 1.02624 1.02261 0.91769 1.23074 1.03953 0.91056 1.02545 1.20880 0.99517 0.98029 0.94530 0.95405 0.95992 0.92292 0.92752 0.85126 0.91625 0.95846 0.86108 0.83594 0.83790 0.86997 0.87641 0.86979 0.87440 0.89096 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.81 9.19 71.98 0.66 -5.15 16 2 C 0.21 11.29 2.60 44.17 0.11 11.41 16 3 H -0.03 -1.68 7.80 -2.39 -0.02 -1.70 16 4 C -0.54 -30.38 8.59 25.60 0.22 -30.16 16 5 H 0.06 3.22 7.62 -2.92 -0.02 3.20 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 8 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 N -0.68 -30.44 6.29 -499.46 -3.14 -33.59 16 13 C 0.10 3.87 5.61 85.56 0.48 4.35 16 14 C -0.08 -2.62 5.39 -19.87 -0.11 -2.72 16 15 C -0.13 -3.83 9.70 22.27 0.22 -3.61 16 16 C -0.11 -2.69 10.05 22.27 0.22 -2.47 16 17 C -0.13 -2.89 9.30 22.27 0.21 -2.68 16 18 C -0.06 -1.44 5.61 -19.87 -0.11 -1.55 16 19 C -0.14 -2.75 6.04 -11.54 -0.07 -2.82 16 20 C -0.16 -2.36 9.86 30.59 0.30 -2.06 16 21 C -0.17 -2.89 10.16 30.59 0.31 -2.58 16 22 C -0.11 -3.39 9.39 22.27 0.21 -3.18 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 25 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 26 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.33 14.69 8.22 -89.69 -0.74 13.96 16 28 H 0.07 2.55 7.38 -2.38 -0.02 2.53 16 29 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 30 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.14 2.39 6.02 -2.91 -0.02 2.37 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.11 1.36 6.18 -2.38 -0.01 1.35 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -62.01 313.20 2.54 -59.47 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.30 Total: 23.47 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 3.11 Total: -42.00 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.90 Total: -86.92 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -62.01 2.54 -59.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.456 kcal (2) G-P(sol) polarization free energy of solvation -62.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds