Wall clock time and date at job start Sun Mar 29 2020 23:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 O 1.42905 * 109.46921 * 119.99732 * 2 1 3 5 5 C 1.52997 * 109.47232 * 239.99850 * 2 1 3 6 6 N 1.46492 * 109.47290 * 175.00106 * 5 2 1 7 7 C 1.37860 * 126.53985 * 269.68891 * 6 5 2 8 8 C 1.40179 * 125.30234 * 359.97438 * 7 6 5 9 9 H 1.08007 * 120.00308 * 359.97438 * 8 7 6 10 10 C 1.40347 * 120.00199 * 180.02562 * 8 7 6 11 11 N 1.30582 * 119.99526 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00217 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47249 * 59.99618 * 12 10 8 14 14 H 1.48500 * 109.47080 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46802 * 299.99347 * 12 10 8 16 16 N 1.32472 * 109.38759 * 179.82050 * 7 6 5 17 17 C 1.33967 * 109.78323 * 0.44881 * 16 7 6 18 18 C 1.40537 * 133.19383 * 179.76730 * 17 16 7 19 19 C 1.36359 * 119.84679 * 179.97438 * 18 17 16 20 20 C 1.39043 * 120.75895 * 0.02562 * 19 18 17 21 21 C 1.37953 * 120.57605 * 359.97438 * 20 19 18 22 22 C 1.37967 * 126.53781 * 89.99879 * 6 5 2 23 23 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 24 24 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 25 25 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 26 26 H 0.96696 * 114.00036 * 60.00010 * 4 2 1 27 27 H 1.09002 * 109.47196 * 295.00207 * 5 2 1 28 28 H 1.09004 * 109.46881 * 54.99722 * 5 2 1 29 29 H 0.97008 * 119.99680 * 179.97438 * 11 10 8 30 30 H 1.07997 * 120.07743 * 359.95295 * 18 17 16 31 31 H 1.07999 * 119.61728 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.70755 * 180.02562 * 20 19 18 33 33 H 1.07995 * 120.11982 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2492 6 7 3.5000 -0.6179 -1.3109 7 6 4.2270 0.3763 -1.9302 8 6 3.6822 1.4712 -2.6153 9 1 2.6105 1.5836 -2.6886 10 6 4.5293 2.4208 -3.2072 11 7 5.8250 2.2847 -3.1190 12 14 3.8034 3.8802 -4.1196 13 1 2.9644 4.6780 -3.1896 14 1 4.9010 4.7297 -4.6477 15 1 2.9676 3.3935 -5.2465 16 7 5.5206 0.1374 -1.7739 17 6 5.6918 -0.9933 -1.0762 18 6 6.8310 -1.6927 -0.6423 19 6 6.6884 -2.8469 0.0698 20 6 5.4258 -3.3437 0.3733 21 6 4.2911 -2.6770 -0.0405 22 6 4.4096 -1.5002 -0.7654 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.7209 -1.5951 1.2330 27 1 1.7516 -1.7715 -1.2055 28 1 1.6053 -0.2618 -2.1369 29 1 6.4106 2.9409 -3.5284 30 1 7.8170 -1.3172 -0.8725 31 1 7.5663 -3.3811 0.4017 32 1 5.3325 -4.2592 0.9387 33 1 3.3141 -3.0694 0.1997 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000352566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:38 Heat of formation + Delta-G solvation = 8.662322 kcal Electronic energy + Delta-G solvation = -17812.836217 eV Core-core repulsion = 15031.698880 eV Total energy + Delta-G solvation = -2781.137337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.39059 -37.40757 -35.96060 -33.55464 -32.67068 -30.79013 -29.11072 -28.56393 -25.87505 -25.59773 -21.73636 -21.30512 -20.64928 -19.45348 -17.11503 -16.42833 -16.26937 -15.56030 -15.03578 -14.80836 -14.40620 -14.01214 -13.14992 -13.02793 -12.86466 -12.68896 -12.32136 -11.98076 -11.64984 -11.52615 -11.38202 -10.96072 -10.85930 -10.60887 -10.54335 -10.36733 -10.19458 -9.95892 -9.27904 -8.91640 -7.87429 -7.18589 -6.81054 -6.66249 -4.61346 2.30155 2.76220 3.00242 3.01224 3.03245 3.76889 4.01002 4.16550 4.62753 4.89900 5.12568 5.27061 5.29982 5.48396 5.56520 5.69748 5.78768 5.88687 5.89868 6.05581 6.10738 6.31802 6.43511 6.57888 6.76844 6.89391 7.00071 7.28960 7.49175 7.65552 7.74582 7.89497 7.95257 7.99983 8.34879 8.64785 9.03835 9.97966 10.22978 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.009964 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.657830 B = 2809.439849 C = 4182.997850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.106 0.894 4 O -0.550 6.550 5 C 0.102 3.898 6 N -0.533 5.533 7 C 0.420 3.580 8 C -0.444 4.444 9 H 0.085 0.915 10 C 0.078 3.922 11 N -0.716 5.716 12 Si 0.917 3.083 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.264 1.264 16 N -0.536 5.536 17 C 0.106 3.894 18 C -0.129 4.129 19 C -0.125 4.125 20 C -0.182 4.182 21 C -0.097 4.097 22 C 0.008 3.992 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.364 0.636 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.280 0.720 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 -3.598 2.328 9.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.023 3.977 3 H 0.124 0.876 4 O -0.354 6.354 5 C -0.023 4.023 6 N -0.229 5.229 7 C 0.183 3.817 8 C -0.481 4.481 9 H 0.103 0.897 10 C -0.150 4.150 11 N -0.338 5.338 12 Si 0.740 3.260 13 H -0.189 1.189 14 H -0.200 1.200 15 H -0.189 1.189 16 N -0.259 5.259 17 C -0.021 4.021 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.203 4.203 21 C -0.118 4.118 22 C -0.100 4.100 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.210 0.790 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.003 -2.401 2.060 7.685 hybrid contribution -1.357 -0.403 -0.231 1.434 sum -8.360 -2.804 1.829 9.006 Atomic orbital electron populations 1.22445 0.96339 1.02183 1.02883 1.22441 0.92226 0.98003 0.85004 0.87626 1.86700 1.77280 1.28057 1.43409 1.21998 0.80643 1.00475 0.99148 1.45360 1.03779 1.23279 1.50435 1.20448 0.84885 0.87165 0.89204 1.18411 0.94305 1.04233 1.31174 0.89720 1.25845 0.94540 0.98969 0.95642 1.69967 1.03457 1.31156 1.29211 0.86243 0.79501 0.80268 0.79976 1.18867 1.19973 1.18897 1.71379 1.13206 1.15270 1.26059 1.19558 0.91460 0.93980 0.97093 1.19766 0.96041 0.96257 1.02994 1.20192 0.96288 0.96855 1.01248 1.20273 0.92131 1.01115 1.06786 1.19488 0.97215 0.94145 1.00983 1.18799 0.91310 0.95299 1.04550 0.91756 0.91346 0.92550 0.78959 0.91297 0.89234 0.90924 0.87516 0.87925 0.87972 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 9.53 37.16 0.35 -1.74 16 2 C 0.08 1.34 3.83 -26.73 -0.10 1.23 16 3 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 4 O -0.55 -9.40 13.16 -35.23 -0.46 -9.87 16 5 C 0.10 1.79 5.55 -4.05 -0.02 1.77 16 6 N -0.53 -12.45 2.81 -113.48 -0.32 -12.77 16 7 C 0.42 11.35 7.41 -155.67 -1.15 10.20 16 8 C -0.44 -11.28 8.99 -38.06 -0.34 -11.62 16 9 H 0.08 1.92 7.09 -52.48 -0.37 1.54 16 10 C 0.08 1.92 5.50 -17.29 -0.10 1.82 16 11 N -0.72 -19.14 11.85 55.57 0.66 -18.49 16 12 Si 0.92 17.87 29.56 -169.99 -5.03 12.84 16 13 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 14 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 15 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 16 N -0.54 -15.64 9.33 -10.31 -0.10 -15.74 16 17 C 0.11 2.84 7.21 -84.89 -0.61 2.23 16 18 C -0.13 -3.05 10.07 -39.39 -0.40 -3.45 16 19 C -0.13 -2.54 9.96 -39.96 -0.40 -2.94 16 20 C -0.18 -3.55 10.03 -39.39 -0.40 -3.95 16 21 C -0.10 -2.00 10.04 -39.51 -0.40 -2.39 16 22 C 0.01 0.19 6.75 -83.75 -0.57 -0.38 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.36 4.79 9.05 45.56 0.41 5.20 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.49 7.31 -51.93 -0.38 1.11 16 29 H 0.28 6.76 8.29 -40.82 -0.34 6.42 16 30 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 31 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 287.58 15.07 4.33 4.33 Total: -1.00 -31.78 287.58 -8.31 -40.09 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -3.28 Total: 8.79 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -4.13 Total: -9.20 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.24 Total: -46.99 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.46 Total: -9.87 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.78 -8.31 -40.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000352566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.756 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds