Wall clock time and date at job start Sun Mar 29 2020 23:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 O 1.42905 * 109.46921 * 119.99732 * 2 1 3 5 5 C 1.52997 * 109.47232 * 239.99850 * 2 1 3 6 6 N 1.46492 * 109.47290 * 175.00106 * 5 2 1 7 7 C 1.37860 * 126.53985 * 269.68891 * 6 5 2 8 8 C 1.40179 * 125.30234 * 359.97438 * 7 6 5 9 9 H 1.08007 * 120.00308 * 359.97438 * 8 7 6 10 10 C 1.40347 * 120.00199 * 180.02562 * 8 7 6 11 11 N 1.30582 * 119.99526 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00217 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47249 * 59.99618 * 12 10 8 14 14 H 1.48500 * 109.47080 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46802 * 299.99347 * 12 10 8 16 16 N 1.32472 * 109.38759 * 179.82050 * 7 6 5 17 17 C 1.33967 * 109.78323 * 0.44881 * 16 7 6 18 18 C 1.40537 * 133.19383 * 179.76730 * 17 16 7 19 19 C 1.36359 * 119.84679 * 179.97438 * 18 17 16 20 20 C 1.39043 * 120.75895 * 0.02562 * 19 18 17 21 21 C 1.37953 * 120.57605 * 359.97438 * 20 19 18 22 22 C 1.37967 * 126.53781 * 89.99879 * 6 5 2 23 23 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 24 24 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 25 25 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 26 26 H 0.96696 * 114.00036 * 60.00010 * 4 2 1 27 27 H 1.09002 * 109.47196 * 295.00207 * 5 2 1 28 28 H 1.09004 * 109.46881 * 54.99722 * 5 2 1 29 29 H 0.97008 * 119.99680 * 179.97438 * 11 10 8 30 30 H 1.07997 * 120.07743 * 359.95295 * 18 17 16 31 31 H 1.07999 * 119.61728 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.70755 * 180.02562 * 20 19 18 33 33 H 1.07995 * 120.11982 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2492 6 7 3.5000 -0.6179 -1.3109 7 6 4.2270 0.3763 -1.9302 8 6 3.6822 1.4712 -2.6153 9 1 2.6105 1.5836 -2.6886 10 6 4.5293 2.4208 -3.2072 11 7 5.8250 2.2847 -3.1190 12 14 3.8034 3.8802 -4.1196 13 1 2.9644 4.6780 -3.1896 14 1 4.9010 4.7297 -4.6477 15 1 2.9676 3.3935 -5.2465 16 7 5.5206 0.1374 -1.7739 17 6 5.6918 -0.9933 -1.0762 18 6 6.8310 -1.6927 -0.6423 19 6 6.6884 -2.8469 0.0698 20 6 5.4258 -3.3437 0.3733 21 6 4.2911 -2.6770 -0.0405 22 6 4.4096 -1.5002 -0.7654 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.7209 -1.5951 1.2330 27 1 1.7516 -1.7715 -1.2055 28 1 1.6053 -0.2618 -2.1369 29 1 6.4106 2.9409 -3.5284 30 1 7.8170 -1.3172 -0.8725 31 1 7.5663 -3.3811 0.4017 32 1 5.3325 -4.2592 0.9387 33 1 3.3141 -3.0694 0.1997 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000352566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:38 Heat of formation + Delta-G solvation = -13.099791 kcal Electronic energy + Delta-G solvation = -17813.779893 eV Core-core repulsion = 15031.698880 eV Total energy + Delta-G solvation = -2782.081013 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.14985 -38.74351 -37.63663 -35.35880 -34.30223 -32.17310 -30.75549 -30.30321 -27.65833 -27.02087 -23.17034 -22.94560 -22.37798 -21.17779 -18.87245 -18.02178 -17.86735 -17.03806 -16.51300 -16.39434 -15.83729 -15.64658 -14.67093 -14.61524 -14.48367 -14.40368 -13.52632 -13.23045 -13.19627 -12.99110 -12.83299 -12.49471 -12.34118 -12.31509 -12.01019 -11.95614 -11.81226 -11.38703 -10.98485 -10.61265 -9.77838 -8.98778 -8.56858 -8.48299 -6.52998 0.55277 1.05811 1.40154 1.47173 1.54995 2.14989 2.35592 2.43080 3.19810 3.45106 3.64117 3.81752 3.96831 3.99861 4.20809 4.33534 4.41669 4.50580 4.57257 4.73208 4.86292 4.92207 5.00334 5.10534 5.18434 5.21176 5.30580 5.59889 5.70587 5.95153 5.99542 6.18217 6.27376 6.57277 6.80396 6.83398 7.23799 8.11042 8.44443 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.009964 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.657830 B = 2809.439849 C = 4182.997850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 H 0.068 0.932 4 O -0.573 6.573 5 C 0.095 3.905 6 N -0.532 5.532 7 C 0.389 3.611 8 C -0.470 4.470 9 H 0.104 0.896 10 C 0.028 3.972 11 N -0.772 5.772 12 Si 1.000 3.000 13 H -0.254 1.254 14 H -0.273 1.273 15 H -0.251 1.251 16 N -0.589 5.589 17 C 0.044 3.956 18 C -0.153 4.153 19 C -0.120 4.120 20 C -0.166 4.166 21 C -0.098 4.098 22 C -0.007 4.007 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.382 0.618 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.282 0.718 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 -5.276 3.134 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.031 3.969 3 H 0.086 0.914 4 O -0.380 6.380 5 C -0.028 4.028 6 N -0.227 5.227 7 C 0.149 3.851 8 C -0.508 4.508 9 H 0.122 0.878 10 C -0.194 4.194 11 N -0.395 5.395 12 Si 0.819 3.181 13 H -0.178 1.178 14 H -0.198 1.198 15 H -0.175 1.175 16 N -0.314 5.314 17 C -0.081 4.081 18 C -0.174 4.174 19 C -0.140 4.140 20 C -0.186 4.186 21 C -0.119 4.119 22 C -0.115 4.115 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.231 0.769 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.427 -4.138 2.897 10.695 hybrid contribution -0.550 -0.112 -0.333 0.653 sum -9.978 -4.249 2.565 11.144 Atomic orbital electron populations 1.22320 0.92324 1.04134 1.03653 1.22274 0.95038 0.95698 0.83931 0.91429 1.86656 1.78065 1.29622 1.43647 1.22397 0.77540 1.02587 1.00293 1.45532 1.05746 1.22062 1.49338 1.20816 0.85231 0.88638 0.90369 1.18894 0.95417 1.04604 1.31841 0.87844 1.27005 0.94611 1.01860 0.95903 1.70133 1.05398 1.32803 1.31185 0.85009 0.78621 0.75858 0.78656 1.17796 1.19766 1.17510 1.71223 1.15277 1.17125 1.27743 1.20132 0.93975 0.94790 0.99204 1.20039 0.95188 0.97801 1.04377 1.20640 0.98551 0.95392 0.99440 1.20901 0.91098 1.01788 1.04793 1.19989 0.99688 0.92646 0.99556 1.19216 0.90513 0.96514 1.05216 0.91294 0.90287 0.89969 0.76896 0.88409 0.88653 0.90763 0.88348 0.84139 0.83227 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 9.53 71.98 0.69 -2.67 16 2 C 0.09 2.79 3.83 30.59 0.12 2.91 16 3 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 4 O -0.57 -18.57 13.16 -148.98 -1.96 -20.53 16 5 C 0.09 3.20 5.55 86.38 0.48 3.68 16 6 N -0.53 -25.22 2.81 -512.94 -1.44 -26.66 16 7 C 0.39 22.06 7.41 133.68 0.99 23.05 16 8 C -0.47 -24.84 8.99 23.26 0.21 -24.63 16 9 H 0.10 4.78 7.09 -2.91 -0.02 4.76 16 10 C 0.03 1.46 5.50 85.39 0.47 1.93 16 11 N -0.77 -43.82 11.85 21.89 0.26 -43.56 16 12 Si 1.00 37.40 29.56 68.60 2.03 39.43 16 13 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 14 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 15 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 16 N -0.59 -36.57 9.33 -186.52 -1.74 -38.31 16 17 C 0.04 2.46 7.21 40.14 0.29 2.75 16 18 C -0.15 -7.40 10.07 22.39 0.23 -7.18 16 19 C -0.12 -4.61 9.96 22.02 0.22 -4.39 16 20 C -0.17 -5.78 10.03 22.40 0.22 -5.55 16 21 C -0.10 -3.74 10.04 22.32 0.22 -3.52 16 22 C -0.01 -0.32 6.75 39.06 0.26 -0.05 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.38 8.79 9.05 -74.06 -0.67 8.12 16 27 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.10 3.07 7.31 -2.38 -0.02 3.06 16 29 H 0.28 14.52 8.29 -92.70 -0.77 13.75 16 30 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 31 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 32 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -75.31 287.58 2.00 -73.31 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.45 Total: 29.99 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.40 Total: -13.67 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -2.92 Total: -108.54 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -1.96 Total: -20.53 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -75.31 2.00 -73.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000352566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.213 kcal (2) G-P(sol) polarization free energy of solvation -75.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds