Wall clock time and date at job start Sun Mar 29 2020 22:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47012 * 125.60676 * 3 2 1 5 5 N 1.46506 * 109.47035 * 179.97438 * 4 3 2 6 6 C 1.39942 * 119.99708 * 179.97438 * 5 4 3 7 7 C 1.38861 * 120.02154 * 359.73393 * 6 5 4 8 8 C 1.38108 * 119.98073 * 179.74205 * 7 6 5 9 9 C 1.38696 * 120.01722 * 0.50378 * 8 7 6 10 10 O 1.36001 * 119.98124 * 179.75062 * 9 8 7 11 11 C 1.42905 * 116.99906 * 0.02562 * 10 9 8 12 12 C 1.50701 * 109.47100 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00097 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99788 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00060 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47114 * 60.00309 * 16 14 12 18 18 H 1.48495 * 109.47407 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47351 * 300.00463 * 16 14 12 20 20 C 1.38702 * 120.04020 * 359.76690 * 9 8 7 21 21 C 1.38111 * 120.01708 * 359.97438 * 20 9 8 22 22 H 1.09004 * 109.47214 * 5.60921 * 3 2 1 23 23 H 1.09004 * 109.47592 * 245.60820 * 3 2 1 24 24 H 1.09004 * 109.46930 * 60.00072 * 4 3 2 25 25 H 1.09000 * 109.47312 * 300.00016 * 4 3 2 26 26 H 0.96999 * 120.00080 * 0.02562 * 5 4 3 27 27 H 1.08006 * 120.00671 * 359.97438 * 7 6 5 28 28 H 1.07998 * 119.98584 * 180.22997 * 8 7 6 29 29 H 1.08996 * 109.46967 * 300.00382 * 11 10 9 30 30 H 1.08997 * 109.46869 * 60.00097 * 11 10 9 31 31 H 0.97004 * 119.99967 * 179.97438 * 15 14 12 32 32 H 1.08001 * 119.99057 * 179.97438 * 20 9 8 33 33 H 1.07997 * 120.00629 * 179.97438 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8408 -1.1728 5 7 4.5826 0.8419 -1.1725 6 6 5.2820 1.5475 -2.1581 7 6 4.5878 2.2421 -3.1398 8 6 5.2787 2.9426 -4.1090 9 6 6.6657 2.9438 -4.1080 10 8 7.3454 3.6296 -5.0658 11 6 6.5668 4.3264 -6.0406 12 6 7.4844 5.0220 -7.0128 13 1 8.5551 4.9399 -6.8980 14 6 6.9571 5.7625 -8.0494 15 7 5.6532 5.8622 -8.1895 16 14 8.0945 6.6241 -9.2548 17 1 8.9515 5.6182 -9.9323 18 1 7.2854 7.3483 -10.2677 19 1 8.9510 7.5913 -8.5225 20 6 7.3600 2.2456 -3.1311 21 6 6.6705 1.5490 -2.1580 22 1 2.9718 -1.0220 -0.1005 23 1 2.9712 0.4252 0.9359 24 1 2.7538 1.8634 -1.0724 25 1 2.7544 0.4162 -2.1088 26 1 5.0679 0.3530 -0.4895 27 1 3.5077 2.2377 -3.1433 28 1 4.7389 3.4859 -4.8704 29 1 5.9385 3.6167 -6.5788 30 1 5.9373 5.0642 -5.5430 31 1 5.2822 6.3834 -8.9186 32 1 8.4400 2.2467 -3.1314 33 1 7.2113 1.0051 -1.3977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003108833.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:36 Heat of formation + Delta-G solvation = 8.319383 kcal Electronic energy + Delta-G solvation = -16119.169514 eV Core-core repulsion = 13338.017307 eV Total energy + Delta-G solvation = -2781.152208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.46268 -37.79558 -36.91858 -35.07503 -32.87093 -31.50308 -30.58065 -28.17397 -26.78030 -24.27910 -23.35009 -21.39609 -20.89119 -18.29233 -17.30406 -16.61081 -16.27904 -15.96373 -15.65989 -14.75727 -14.47255 -14.20610 -14.14846 -13.71645 -13.47472 -13.10837 -12.98834 -12.54017 -12.36255 -12.04918 -11.84043 -11.63374 -11.53393 -11.01947 -10.96919 -10.45722 -10.37565 -10.11084 -9.22511 -9.09117 -8.59290 -8.45564 -6.69542 -6.21080 -4.24370 1.78031 2.13703 2.31430 2.40668 3.19160 3.28131 3.30989 3.34448 3.91544 4.23106 4.32468 4.44046 4.59548 4.66650 4.89523 5.15960 5.27369 5.33223 5.44259 5.46765 5.80986 5.88771 5.94915 6.38183 6.57217 6.63581 6.85448 7.06354 7.13233 7.16074 7.22264 7.49891 7.72127 7.80899 8.02027 8.58949 8.90753 9.40832 10.90191 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.039656 B = 0.003581 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.897508 B = 7816.925415 C = 8497.072584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.209 3.791 3 C -0.035 4.035 4 C 0.134 3.866 5 N -0.757 5.757 6 C 0.153 3.847 7 C -0.151 4.151 8 C -0.168 4.168 9 C 0.106 3.894 10 O -0.322 6.322 11 C 0.195 3.805 12 C -0.523 4.523 13 H 0.069 0.931 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.913 3.087 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.126 4.126 21 C -0.151 4.151 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.396 0.604 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.125 0.875 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -10.949 15.288 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.109 4.109 3 C -0.075 4.075 4 C 0.008 3.992 5 N -0.393 5.393 6 C 0.054 3.946 7 C -0.173 4.173 8 C -0.187 4.187 9 C 0.058 3.942 10 O -0.236 6.236 11 C 0.122 3.878 12 C -0.561 4.561 13 H 0.087 0.913 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.739 3.261 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.145 4.145 21 C -0.173 4.173 22 H 0.132 0.868 23 H 0.132 0.868 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.231 0.769 27 H 0.134 0.866 28 H 0.150 0.850 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.025 -10.786 15.061 18.957 hybrid contribution 0.743 0.355 -0.500 0.964 sum -3.282 -10.431 14.561 18.210 Atomic orbital electron populations 1.81279 1.12944 1.08369 1.08085 1.28841 0.94953 0.93513 0.93626 1.19364 0.82131 1.04083 1.01927 1.21029 0.81954 0.99510 0.96755 1.44163 1.03552 1.58822 1.32780 1.17480 0.90847 0.95593 0.90655 1.20399 0.98959 1.01647 0.96291 1.21268 0.93762 1.02762 1.00919 1.19094 0.90481 0.93846 0.90787 1.86110 1.37555 1.61957 1.37963 1.20555 0.91999 0.90529 0.84717 1.20960 0.93963 1.30779 1.10417 0.91251 1.24932 0.95494 0.96222 0.97597 1.69942 1.10678 1.40692 1.32080 0.86318 0.80142 0.79527 0.80071 1.19874 1.21045 1.19877 1.20176 0.99761 0.99767 0.94785 1.20231 0.91643 1.04415 1.01010 0.86756 0.86753 0.91702 0.91701 0.76925 0.86633 0.85012 0.96339 0.96333 0.92343 0.85709 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.91 18.54 42.15 0.78 -4.12 16 2 C 0.21 1.62 15.43 -20.76 -0.32 1.30 16 3 C -0.03 -0.13 5.82 -29.52 -0.17 -0.30 16 4 C 0.13 0.92 4.87 -4.04 -0.02 0.90 16 5 N -0.76 -6.37 5.74 -58.58 -0.34 -6.71 16 6 C 0.15 1.98 6.66 -83.70 -0.56 1.42 16 7 C -0.15 -2.29 9.31 -39.40 -0.37 -2.66 16 8 C -0.17 -3.16 9.03 -39.46 -0.36 -3.52 16 9 C 0.11 2.16 6.69 -39.24 -0.26 1.90 16 10 O -0.32 -7.89 10.12 -19.74 -0.20 -8.09 16 11 C 0.19 5.23 4.49 36.01 0.16 5.39 16 12 C -0.52 -15.07 9.43 -34.44 -0.32 -15.40 16 13 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 16 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C -0.13 -2.10 9.98 -39.46 -0.39 -2.49 16 21 C -0.15 -2.02 9.89 -39.40 -0.39 -2.41 16 22 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.06 0.50 7.96 -51.93 -0.41 0.09 16 25 H 0.06 0.50 7.94 -51.93 -0.41 0.09 16 26 H 0.40 2.28 8.49 -40.82 -0.35 1.93 16 27 H 0.12 1.52 6.73 -52.48 -0.35 1.17 16 28 H 0.13 2.65 6.29 -52.49 -0.33 2.32 16 29 H 0.02 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.02 0.52 7.66 -51.93 -0.40 0.12 16 31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 296.85 15.07 4.47 4.47 Total: -1.00 -32.87 296.85 -6.55 -39.43 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -3.89 Total: -1.67 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -3.10 Total: -14.28 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 1.18 Total: -36.21 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.20 Total: -8.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.87 -6.55 -39.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003108833.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.745 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds