Wall clock time and date at job start Sun Mar 29 2020 22:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47012 * 125.60676 * 3 2 1 5 5 N 1.46506 * 109.47035 * 179.97438 * 4 3 2 6 6 C 1.39942 * 119.99708 * 179.97438 * 5 4 3 7 7 C 1.38861 * 120.02154 * 359.73393 * 6 5 4 8 8 C 1.38108 * 119.98073 * 179.74205 * 7 6 5 9 9 C 1.38696 * 120.01722 * 0.50378 * 8 7 6 10 10 O 1.36001 * 119.98124 * 179.75062 * 9 8 7 11 11 C 1.42905 * 116.99906 * 0.02562 * 10 9 8 12 12 C 1.50701 * 109.47100 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00097 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99788 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00060 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47114 * 60.00309 * 16 14 12 18 18 H 1.48495 * 109.47407 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47351 * 300.00463 * 16 14 12 20 20 C 1.38702 * 120.04020 * 359.76690 * 9 8 7 21 21 C 1.38111 * 120.01708 * 359.97438 * 20 9 8 22 22 H 1.09004 * 109.47214 * 5.60921 * 3 2 1 23 23 H 1.09004 * 109.47592 * 245.60820 * 3 2 1 24 24 H 1.09004 * 109.46930 * 60.00072 * 4 3 2 25 25 H 1.09000 * 109.47312 * 300.00016 * 4 3 2 26 26 H 0.96999 * 120.00080 * 0.02562 * 5 4 3 27 27 H 1.08006 * 120.00671 * 359.97438 * 7 6 5 28 28 H 1.07998 * 119.98584 * 180.22997 * 8 7 6 29 29 H 1.08996 * 109.46967 * 300.00382 * 11 10 9 30 30 H 1.08997 * 109.46869 * 60.00097 * 11 10 9 31 31 H 0.97004 * 119.99967 * 179.97438 * 15 14 12 32 32 H 1.08001 * 119.99057 * 179.97438 * 20 9 8 33 33 H 1.07997 * 120.00629 * 179.97438 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8408 -1.1728 5 7 4.5826 0.8419 -1.1725 6 6 5.2820 1.5475 -2.1581 7 6 4.5878 2.2421 -3.1398 8 6 5.2787 2.9426 -4.1090 9 6 6.6657 2.9438 -4.1080 10 8 7.3454 3.6296 -5.0658 11 6 6.5668 4.3264 -6.0406 12 6 7.4844 5.0220 -7.0128 13 1 8.5551 4.9399 -6.8980 14 6 6.9571 5.7625 -8.0494 15 7 5.6532 5.8622 -8.1895 16 14 8.0945 6.6241 -9.2548 17 1 8.9515 5.6182 -9.9323 18 1 7.2854 7.3483 -10.2677 19 1 8.9510 7.5913 -8.5225 20 6 7.3600 2.2456 -3.1311 21 6 6.6705 1.5490 -2.1580 22 1 2.9718 -1.0220 -0.1005 23 1 2.9712 0.4252 0.9359 24 1 2.7538 1.8634 -1.0724 25 1 2.7544 0.4162 -2.1088 26 1 5.0679 0.3530 -0.4895 27 1 3.5077 2.2377 -3.1433 28 1 4.7389 3.4859 -4.8704 29 1 5.9385 3.6167 -6.5788 30 1 5.9373 5.0642 -5.5430 31 1 5.2822 6.3834 -8.9186 32 1 8.4400 2.2467 -3.1314 33 1 7.2113 1.0051 -1.3977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003108833.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:36 Heat of formation + Delta-G solvation = -13.945436 kcal Electronic energy + Delta-G solvation = -16120.134989 eV Core-core repulsion = 13338.017307 eV Total energy + Delta-G solvation = -2782.117683 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81232 -38.95879 -37.86265 -36.11211 -34.97034 -32.36176 -31.87128 -29.94906 -28.18713 -25.39306 -24.96156 -22.76058 -22.11620 -19.27322 -18.72582 -18.39519 -17.43878 -16.76706 -16.55432 -16.46846 -16.29483 -15.60703 -15.30110 -14.58667 -14.51579 -14.16981 -14.14252 -13.85933 -13.56259 -13.36325 -13.14742 -12.87029 -12.86173 -12.43658 -12.36857 -12.23851 -11.83858 -11.71900 -11.25391 -10.74368 -10.22839 -9.81828 -8.37293 -7.89293 -6.51710 0.51025 0.82365 1.39768 1.45027 1.53481 1.69573 1.83333 2.30623 2.49549 2.94485 2.96590 3.03588 3.34365 3.96555 4.03628 4.13379 4.23603 4.47527 4.58550 4.59605 4.75456 4.81100 4.99786 5.01774 5.02367 5.13851 5.34027 5.42905 5.50651 5.68788 5.83565 5.91110 6.42556 6.57210 6.60215 6.94248 7.11315 7.21945 8.74911 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.039656 B = 0.003581 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.897508 B = 7816.925415 C = 8497.072584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.239 3.761 3 C -0.021 4.021 4 C 0.127 3.873 5 N -0.735 5.735 6 C 0.179 3.821 7 C -0.161 4.161 8 C -0.184 4.184 9 C 0.046 3.954 10 O -0.345 6.345 11 C 0.216 3.784 12 C -0.558 4.558 13 H 0.067 0.933 14 C 0.009 3.991 15 N -0.928 5.928 16 Si 0.989 3.011 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.263 1.263 20 C -0.122 4.122 21 C -0.140 4.140 22 H 0.147 0.853 23 H 0.147 0.853 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.417 0.583 27 H 0.132 0.868 28 H 0.100 0.900 29 H -0.005 1.005 30 H -0.005 1.005 31 H 0.273 0.727 32 H 0.135 0.865 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -12.419 17.340 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.078 4.078 3 C -0.060 4.060 4 C 0.001 3.999 5 N -0.370 5.370 6 C 0.077 3.923 7 C -0.184 4.184 8 C -0.204 4.204 9 C 0.000 4.000 10 O -0.260 6.260 11 C 0.143 3.857 12 C -0.595 4.595 13 H 0.085 0.915 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.811 3.189 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.188 1.188 20 C -0.141 4.141 21 C -0.162 4.162 22 H 0.165 0.835 23 H 0.165 0.835 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.255 0.745 27 H 0.150 0.850 28 H 0.118 0.882 29 H 0.013 0.987 30 H 0.013 0.987 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.900 -12.306 17.183 21.333 hybrid contribution 0.300 0.663 -0.928 1.179 sum -2.600 -11.643 16.254 20.163 Atomic orbital electron populations 1.81319 1.15371 1.10898 1.10474 1.29500 0.95553 0.91312 0.91472 1.19518 0.79170 1.05547 1.01802 1.21112 0.80782 0.99939 0.98066 1.44123 1.04288 1.57134 1.31497 1.17552 0.91095 0.93616 0.90048 1.20518 0.99824 1.01813 0.96240 1.21139 0.93499 1.03990 1.01730 1.19541 0.91413 0.96882 0.92157 1.86006 1.37802 1.63258 1.38920 1.20024 0.91373 0.89468 0.84869 1.21336 0.94148 1.32188 1.11835 0.91490 1.26001 0.97301 0.96442 0.99255 1.70063 1.12648 1.41078 1.32838 0.85153 0.77980 0.78435 0.77372 1.18799 1.19851 1.18806 1.20454 1.00493 0.98975 0.94204 1.20650 0.91855 1.03133 1.00542 0.83518 0.83517 0.92358 0.92348 0.74481 0.85015 0.88189 0.98748 0.98741 0.91795 0.84712 0.81601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.06 18.54 20.00 0.37 -10.69 16 2 C 0.24 3.09 15.43 89.44 1.38 4.47 16 3 C -0.02 -0.05 5.82 28.79 0.17 0.11 16 4 C 0.13 1.25 4.87 86.38 0.42 1.67 16 5 N -0.73 -8.70 5.74 -339.25 -1.95 -10.65 16 6 C 0.18 4.06 6.66 38.14 0.25 4.32 16 7 C -0.16 -4.83 9.31 22.39 0.21 -4.62 16 8 C -0.18 -7.39 9.03 22.35 0.20 -7.19 16 9 C 0.05 1.99 6.69 22.49 0.15 2.14 16 10 O -0.34 -18.11 10.12 -93.56 -0.95 -19.06 16 11 C 0.22 12.57 4.49 71.24 0.32 12.89 16 12 C -0.56 -33.68 9.43 25.60 0.24 -33.44 16 13 H 0.07 3.96 7.81 -2.91 -0.02 3.93 16 14 C 0.01 0.53 5.46 84.65 0.46 0.99 16 15 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 16 Si 0.99 44.24 29.54 68.60 2.03 46.27 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 C -0.12 -3.98 9.98 22.35 0.22 -3.75 16 21 C -0.14 -3.25 9.89 22.39 0.22 -3.02 16 22 H 0.15 -0.38 8.14 -2.38 -0.02 -0.40 16 23 H 0.15 -0.38 8.14 -2.39 -0.02 -0.40 16 24 H 0.06 0.72 7.96 -2.38 -0.02 0.70 16 25 H 0.06 0.72 7.94 -2.39 -0.02 0.70 16 26 H 0.42 2.04 8.49 -92.71 -0.79 1.25 16 27 H 0.13 3.40 6.73 -2.91 -0.02 3.38 16 28 H 0.10 4.53 6.29 -2.91 -0.02 4.51 16 29 H -0.01 -0.32 7.66 -2.39 -0.02 -0.34 16 30 H -0.01 -0.31 7.66 -2.39 -0.02 -0.33 16 31 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 33 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -78.01 296.85 4.38 -73.63 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 0.34 Total: 1.62 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 4.25 Total: -25.44 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -1.29 Total: -77.03 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.95 Total: -19.06 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -78.01 4.38 -73.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003108833.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.686 kcal (2) G-P(sol) polarization free energy of solvation -78.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds