Wall clock time and date at job start Sun Mar 29 2020 22:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48493 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46950 * 300.00088 * 3 2 1 6 6 H 1.48497 * 109.47084 * 59.99798 * 3 2 1 7 7 C 1.38807 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00391 * 163.88628 * 7 2 1 9 9 N 1.36941 * 119.99655 * 343.88685 * 7 2 1 10 10 C 1.47264 * 121.35318 * 326.24139 * 9 7 2 11 11 C 1.52995 * 108.18592 * 118.47960 * 10 9 7 12 12 N 1.45644 * 110.77384 * 46.72148 * 11 10 9 13 13 C 1.33381 * 124.59358 * 338.07925 * 12 11 10 14 14 O 1.21280 * 118.48885 * 184.33974 * 13 12 11 15 15 C 1.47177 * 121.48703 * 146.41591 * 9 7 2 16 16 H 1.09000 * 109.43834 * 342.67993 * 15 9 7 17 17 C 1.50701 * 109.76257 * 103.07242 * 15 9 7 18 18 C 1.38239 * 120.00012 * 242.42424 * 17 15 9 19 19 C 1.38236 * 120.00098 * 179.74222 * 18 17 15 20 20 C 1.38238 * 119.99596 * 0.55370 * 19 18 17 21 21 C 1.38236 * 120.00284 * 359.70062 * 20 19 18 22 22 C 1.38232 * 119.99672 * 0.02562 * 21 20 19 23 23 H 0.97000 * 119.99739 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.72297 * 358.80468 * 10 9 7 25 25 H 1.09004 * 109.72280 * 238.14685 * 10 9 7 26 26 H 1.09003 * 109.21172 * 286.38808 * 11 10 9 27 27 H 1.09003 * 109.21922 * 167.06069 * 11 10 9 28 28 H 0.97005 * 117.70156 * 158.10212 * 12 11 10 29 29 H 1.07999 * 119.99799 * 359.97438 * 18 17 15 30 30 H 1.07998 * 120.00048 * 180.27149 * 19 18 17 31 31 H 1.08005 * 119.99764 * 179.71864 * 20 19 18 32 32 H 1.07994 * 119.99897 * 180.02562 * 21 20 19 33 33 H 1.07998 * 119.99661 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0585 -1.2204 -0.2601 9 7 1.3659 -2.3649 0.3281 10 6 0.2856 -2.3858 1.3287 11 6 -0.9949 -2.8607 0.6391 12 7 -0.7363 -4.0408 -0.1744 13 6 0.4627 -4.3892 -0.6436 14 8 0.5393 -5.3519 -1.3772 15 6 1.7249 -3.6466 -0.2998 16 1 2.2966 -3.4579 -1.2084 17 6 2.5497 -4.4691 0.6565 18 6 3.8484 -4.8127 0.3302 19 6 4.6067 -5.5625 1.2097 20 6 4.0626 -5.9785 2.4104 21 6 2.7622 -5.6394 2.7344 22 6 2.0058 -4.8848 1.8574 23 1 -0.4850 0.8401 0.0004 24 1 0.1369 -1.3835 1.7305 25 1 0.5447 -3.0714 2.1355 26 1 -1.3766 -2.0626 0.0024 27 1 -1.7412 -3.1030 1.3957 28 1 -1.4890 -4.6134 -0.3904 29 1 4.2717 -4.4920 -0.6102 30 1 5.6227 -5.8272 0.9567 31 1 4.6536 -6.5683 3.0956 32 1 2.3373 -5.9641 3.6727 33 1 0.9898 -4.6202 2.1104 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033646036.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:21 Heat of formation + Delta-G solvation = 19.598651 kcal Electronic energy + Delta-G solvation = -18154.032711 eV Core-core repulsion = 15373.369609 eV Total energy + Delta-G solvation = -2780.663102 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85649 -38.16139 -35.99698 -33.76468 -32.22162 -30.54807 -30.04944 -28.41834 -26.18563 -23.63833 -22.30828 -21.76883 -21.26758 -18.41547 -17.36380 -16.40688 -15.91213 -15.51587 -15.09884 -15.02274 -14.35120 -14.13045 -13.50550 -13.27269 -12.98246 -12.94961 -12.19123 -12.11918 -11.60206 -11.52964 -11.13239 -10.98531 -10.80807 -10.62617 -10.29841 -10.23960 -9.89232 -9.37381 -8.69745 -8.47516 -8.28540 -8.21346 -6.83284 -6.01541 -3.51241 1.80048 1.84243 3.27225 3.36570 3.38383 3.39479 3.99894 4.28156 4.38240 5.14860 5.19297 5.29778 5.31259 5.41541 5.52311 5.62418 5.91297 5.98143 6.01162 6.21771 6.24111 6.39062 6.41840 6.51661 6.86996 6.87758 7.07279 7.14386 7.19195 7.42598 7.45654 7.66398 8.08774 8.20198 8.91484 8.97045 9.54507 10.14673 11.06911 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.009279 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.275745 B = 3016.960275 C = 3689.431817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.014 3.986 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.574 5.574 10 C 0.143 3.857 11 C 0.094 3.906 12 N -0.711 5.711 13 C 0.520 3.480 14 O -0.580 6.580 15 C 0.190 3.810 16 H 0.100 0.900 17 C -0.063 4.063 18 C -0.105 4.105 19 C -0.124 4.124 20 C -0.132 4.132 21 C -0.125 4.125 22 C -0.109 4.109 23 H 0.257 0.743 24 H 0.100 0.900 25 H 0.022 0.978 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.382 0.618 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 -6.636 5.042 8.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.186 4.186 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.296 5.296 10 C 0.018 3.982 11 C -0.031 4.031 12 N -0.360 5.360 13 C 0.306 3.694 14 O -0.461 6.461 15 C 0.080 3.920 16 H 0.118 0.882 17 C -0.066 4.066 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.127 4.127 23 H 0.066 0.934 24 H 0.118 0.882 25 H 0.040 0.960 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.216 0.784 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.107 -6.750 4.711 8.497 hybrid contribution -0.059 0.830 -0.019 0.833 sum 2.048 -5.920 4.692 7.827 Atomic orbital electron populations 1.69949 1.05378 1.25913 1.52469 1.25171 0.95359 0.98686 0.99382 0.86140 0.79567 0.83206 0.77334 1.20018 1.21530 1.21359 1.19138 0.92352 0.83663 1.43666 0.91353 1.44136 1.40862 1.01639 1.42927 1.21266 0.85847 1.01258 0.89868 1.22068 0.99700 0.86810 0.94541 1.45420 1.09208 1.27846 1.53576 1.20861 0.86272 0.83562 0.78670 1.90644 1.87238 1.29983 1.38187 1.19706 0.90962 0.86242 0.95099 0.88165 1.20377 0.94837 0.95711 0.95656 1.21021 0.93822 0.98042 0.99480 1.21026 0.99419 0.99154 0.94646 1.20997 0.95644 1.01246 0.97182 1.21045 0.94704 0.99271 0.99322 1.21234 1.00306 0.97236 0.93943 0.93350 0.88196 0.95997 0.89210 0.93014 0.78437 0.86218 0.86583 0.86826 0.86716 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.26 10.48 55.49 0.58 -22.68 16 2 C 0.01 0.36 4.94 -17.43 -0.09 0.28 16 3 Si 0.91 20.46 29.58 -169.99 -5.03 15.43 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.26 -6.66 9.64 -15.06 -0.15 -6.81 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.57 -13.47 2.60 -167.32 -0.44 -13.91 16 10 C 0.14 3.04 5.21 -3.63 -0.02 3.03 16 11 C 0.09 1.80 7.26 -4.51 -0.03 1.77 16 12 N -0.71 -13.76 5.42 -61.32 -0.33 -14.09 16 13 C 0.52 11.42 6.60 -11.73 -0.08 11.35 16 14 O -0.58 -13.97 17.80 5.56 0.10 -13.87 16 15 C 0.19 4.17 2.90 -69.99 -0.20 3.97 16 16 H 0.10 2.26 7.75 -51.93 -0.40 1.86 16 17 C -0.06 -1.24 5.01 -104.62 -0.52 -1.76 16 18 C -0.10 -1.86 9.67 -39.58 -0.38 -2.24 16 19 C -0.12 -1.90 10.05 -39.58 -0.40 -2.29 16 20 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 21 C -0.13 -1.96 10.05 -39.58 -0.40 -2.35 16 22 C -0.11 -1.98 8.33 -39.59 -0.33 -2.31 16 23 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 24 H 0.10 2.33 6.28 -51.93 -0.33 2.01 16 25 H 0.02 0.44 5.02 -51.93 -0.26 0.18 16 26 H 0.09 1.96 7.13 -51.93 -0.37 1.59 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.38 6.50 8.80 -40.82 -0.36 6.15 16 29 H 0.12 1.96 7.95 -52.49 -0.42 1.54 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.12 2.21 5.52 -52.49 -0.29 1.92 16 LS Contribution 273.86 15.07 4.13 4.13 Total: -1.00 -29.01 273.86 -7.65 -36.66 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -3.67 Total: 8.04 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.99 Total: 0.29 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.19 Total: -50.68 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.10 Total: -13.87 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.01 -7.65 -36.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033646036.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.254 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds