Wall clock time and date at job start Sun Mar 29 2020 22:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48501 * 109.46813 * 239.99643 * 3 2 1 5 5 H 1.48494 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46991 * 120.00169 * 3 2 1 7 7 C 1.38754 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99922 * 180.02562 * 7 2 1 9 9 O 1.34923 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.34312 * 116.99961 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99656 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99997 * 179.97438 * 10 9 7 13 13 C 1.50706 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.38250 * 120.03292 * 90.00213 * 13 12 10 15 15 C 1.38096 * 119.93769 * 179.97438 * 14 13 12 16 16 C 1.38505 * 120.21439 * 0.02562 * 15 14 13 17 17 C 1.38214 * 119.84879 * 359.97438 * 16 15 14 18 18 C 1.38101 * 120.02966 * 269.72294 * 13 12 10 19 19 C 1.51363 * 109.76141 * 180.02562 * 17 16 15 20 20 C 1.54346 * 105.16887 * 342.81608 * 19 17 16 21 21 C 1.51367 * 130.39112 * 180.02562 * 16 15 14 22 22 H 0.97003 * 119.99839 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46670 * 59.99998 * 12 10 9 24 24 H 1.09000 * 109.47247 * 299.99712 * 12 10 9 25 25 H 1.08008 * 120.03110 * 0.02562 * 14 13 12 26 26 H 1.08003 * 119.89377 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.89649 * 0.02562 * 18 13 12 28 28 H 1.08997 * 110.30717 * 223.88703 * 19 17 16 29 29 H 1.09003 * 110.38376 * 101.77620 * 19 17 16 30 30 H 1.09000 * 110.82172 * 268.11378 * 20 19 17 31 31 H 1.08996 * 110.99529 * 144.64762 * 20 19 17 32 32 H 1.09000 * 110.30671 * 316.08872 * 21 16 15 33 33 H 1.09000 * 110.30356 * 78.24552 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1023 1.6963 -1.2125 5 1 1.2836 2.7464 -0.0006 6 1 3.1022 1.6963 1.2125 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2754 -3.4331 0.0001 12 6 1.3807 -4.8393 0.0011 13 6 2.4187 -5.9319 0.0004 14 6 2.8961 -6.4336 1.1969 15 6 3.8469 -7.4352 1.1939 16 6 4.3246 -7.9391 -0.0045 17 6 3.8473 -7.4376 -1.2007 18 6 2.8896 -6.4371 -1.1956 19 6 4.5190 -8.1465 -2.3572 20 6 5.7665 -8.8208 -1.7479 21 6 5.3495 -9.0197 -0.2752 22 1 -0.4850 0.8401 0.0004 23 1 0.7577 -4.9299 -0.8886 24 1 0.7583 -4.9295 0.8914 25 1 2.5253 -6.0431 2.1332 26 1 4.2197 -7.8263 2.1291 27 1 2.5131 -6.0475 -2.1299 28 1 4.8130 -7.4278 -3.1221 29 1 3.8522 -8.8974 -2.7810 30 1 6.6350 -8.1661 -1.8200 31 1 5.9654 -9.7794 -2.2270 32 1 6.2107 -8.8973 0.3817 33 1 4.9050 -10.0054 -0.1378 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058935387.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:54 Heat of formation + Delta-G solvation = -68.891512 kcal Electronic energy + Delta-G solvation = -16862.693498 eV Core-core repulsion = 14045.900424 eV Total energy + Delta-G solvation = -2816.793074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03636 -38.82240 -36.12514 -34.84829 -32.12279 -31.77314 -30.35831 -27.79304 -26.52306 -24.91438 -22.44345 -20.86850 -20.75339 -19.31592 -17.66858 -16.45438 -16.01239 -15.75598 -15.10503 -14.69602 -14.46703 -14.39979 -14.06659 -13.05324 -12.94219 -12.83341 -12.54001 -12.18090 -11.80918 -11.59108 -11.53137 -11.22239 -11.08642 -10.99604 -10.80175 -10.54277 -10.43362 -10.28912 -9.76688 -8.98818 -8.53594 -8.49858 -8.15211 -6.36881 -4.04718 1.56149 1.65889 3.16240 3.20935 3.25174 3.59646 3.82568 4.09378 4.45466 4.59643 4.79776 4.93509 5.07747 5.12742 5.17901 5.24337 5.36187 5.61007 5.66568 5.71719 5.72929 5.78550 5.85814 5.96111 6.00376 6.10203 6.27545 6.40917 6.61966 6.81763 6.85499 6.91616 7.26557 7.43935 8.00248 8.77673 9.12094 9.91382 10.81293 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.043127 B = 0.004533 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.090921 B = 6175.090210 C = 6334.823072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.382 4.382 8 H 0.094 0.906 9 O -0.217 6.217 10 C 0.400 3.600 11 O -0.548 6.548 12 C -0.068 4.068 13 C -0.052 4.052 14 C -0.104 4.104 15 C -0.108 4.108 16 C -0.108 4.108 17 C -0.100 4.100 18 C -0.091 4.091 19 C -0.080 4.080 20 C -0.121 4.121 21 C -0.079 4.079 22 H 0.269 0.731 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -16.269 -1.452 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.112 0.888 9 O -0.125 6.125 10 C 0.246 3.754 11 O -0.445 6.445 12 C -0.106 4.106 13 C -0.053 4.053 14 C -0.122 4.122 15 C -0.126 4.126 16 C -0.108 4.108 17 C -0.100 4.100 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.158 4.158 21 C -0.116 4.116 22 H 0.079 0.921 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.140 0.860 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.921 -16.075 -1.456 17.193 hybrid contribution 0.346 0.954 0.071 1.018 sum 6.267 -15.121 -1.385 16.427 Atomic orbital electron populations 1.69987 1.05961 1.27677 1.46883 1.25314 0.95798 0.98784 0.96309 0.85756 0.78623 0.79547 0.79316 1.19537 1.20387 1.19526 1.21160 0.92314 0.79931 1.52382 0.88846 1.83879 1.39348 1.13328 1.75919 1.23017 0.86750 0.86932 0.78742 1.90578 1.15630 1.88020 1.50234 1.20093 0.96622 0.88538 1.05329 1.19277 0.97303 0.95483 0.93193 1.20887 0.97164 0.96477 0.97640 1.20487 0.97768 0.97551 0.96750 1.20493 0.98664 0.98200 0.93462 1.20447 0.97249 0.96921 0.95423 1.20445 0.96804 0.96003 0.97668 1.21006 0.96041 0.98655 0.96045 1.22284 0.97772 1.00650 0.95100 1.20997 0.96941 0.96863 0.96777 0.92102 0.88172 0.88091 0.85955 0.86550 0.86393 0.90826 0.90516 0.91025 0.90823 0.91036 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.67 55.48 0.76 -25.04 16 2 C 0.04 1.19 5.49 -17.53 -0.10 1.10 16 3 Si 0.94 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.38 -11.54 9.65 30.92 0.30 -11.24 16 8 H 0.09 2.85 6.86 -52.49 -0.36 2.49 16 9 O -0.22 -6.34 9.75 -20.71 -0.20 -6.54 16 10 C 0.40 10.09 7.90 36.01 0.28 10.37 16 11 O -0.55 -15.22 15.27 -19.05 -0.29 -15.51 16 12 C -0.07 -1.27 5.94 -29.03 -0.17 -1.44 16 13 C -0.05 -0.92 4.37 -104.66 -0.46 -1.38 16 14 C -0.10 -1.68 9.70 -39.63 -0.38 -2.07 16 15 C -0.11 -1.56 10.04 -39.53 -0.40 -1.96 16 16 C -0.11 -1.52 6.14 -104.21 -0.64 -2.16 16 17 C -0.10 -1.48 6.14 -104.21 -0.64 -2.12 16 18 C -0.09 -1.51 9.69 -39.53 -0.38 -1.89 16 19 C -0.08 -0.91 6.77 -26.85 -0.18 -1.09 16 20 C -0.12 -1.16 7.08 -25.32 -0.18 -1.34 16 21 C -0.08 -0.83 6.77 -26.85 -0.18 -1.01 16 22 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.10 1.66 8.08 -51.93 -0.42 1.24 16 24 H 0.10 1.66 8.09 -51.93 -0.42 1.24 16 25 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 26 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 27 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 289.60 15.07 4.36 4.36 Total: -1.00 -34.33 289.60 -7.66 -41.99 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.14 Total: 0.28 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -3.13 Total: -16.24 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.76 Total: -25.04 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.49 Total: -22.06 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.33 -7.66 -41.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058935387.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.897 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds