Wall clock time and date at job start Sun Mar 29 2020 23:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46730 * 2 1 4 4 C 1.50704 * 109.46981 * 240.00435 * 2 1 3 5 5 H 1.08000 * 120.00080 * 239.99395 * 4 2 1 6 6 C 1.37877 * 120.00085 * 60.00129 * 4 2 1 7 7 N 1.31513 * 120.00077 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99968 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46924 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47114 * 119.99494 * 8 6 4 11 11 H 1.48500 * 109.46705 * 239.99763 * 8 6 4 12 12 N 1.46496 * 109.47641 * 120.00344 * 2 1 3 13 13 C 1.46500 * 120.00175 * 60.00031 * 12 2 1 14 14 C 1.37652 * 120.00001 * 240.00535 * 12 2 1 15 15 N 1.30854 * 124.95623 * 179.97438 * 14 12 2 16 16 C 1.36143 * 108.69313 * 179.97438 * 15 14 12 17 17 C 1.39551 * 133.67152 * 179.97438 * 16 15 14 18 18 C 1.37769 * 119.73584 * 180.02562 * 17 16 15 19 19 C 1.38638 * 120.38892 * 0.02562 * 18 17 16 20 20 C 1.38037 * 120.45996 * 359.91334 * 19 18 17 21 21 C 1.38528 * 119.89834 * 0.12752 * 20 19 18 22 22 O 1.34455 * 124.96075 * 359.97438 * 14 12 2 23 23 H 1.09003 * 109.46730 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46991 * 299.99380 * 1 2 3 25 25 H 1.08997 * 109.47169 * 60.00119 * 1 2 3 26 26 H 0.96994 * 119.99895 * 180.02562 * 7 6 4 27 27 H 1.09008 * 109.47228 * 270.00568 * 13 12 2 28 28 H 1.09008 * 109.47035 * 30.00012 * 13 12 2 29 29 H 1.08998 * 109.47860 * 150.00321 * 13 12 2 30 30 H 1.08009 * 120.13044 * 359.97438 * 17 16 15 31 31 H 1.08004 * 119.80617 * 179.97438 * 18 17 16 32 32 H 1.07998 * 119.76810 * 180.02562 * 19 18 17 33 33 H 1.07996 * 120.04781 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 3.1463 -2.2868 -3.6040 10 1 1.1660 -1.5864 -4.8161 11 1 3.1465 -0.1870 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.8098 -0.0217 2.1022 15 7 3.2973 -0.5419 3.1994 16 6 4.0290 0.4076 3.8448 17 6 4.7600 0.4179 5.0335 18 6 5.4082 1.5682 5.4271 19 6 5.3377 2.7139 4.6498 20 6 4.6191 2.7168 3.4712 21 6 3.9606 1.5691 3.0612 22 8 3.1946 1.2617 1.9891 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7081 1.1610 -3.4843 27 1 0.7377 -2.1445 1.9992 28 1 1.5296 -2.5969 0.4706 29 1 2.4630 -2.5820 1.9862 30 1 4.8168 -0.4720 5.6429 31 1 5.9740 1.5776 6.3471 32 1 5.8500 3.6100 4.9677 33 1 4.5689 3.6130 2.8707 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:20 Heat of formation + Delta-G solvation = 48.470494 kcal Electronic energy + Delta-G solvation = -17449.579990 eV Core-core repulsion = 14670.168866 eV Total energy + Delta-G solvation = -2779.411125 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.51632 -37.80327 -36.65110 -34.09051 -32.86911 -30.30105 -29.78051 -28.48207 -26.18483 -25.38828 -22.57288 -22.44358 -21.17617 -20.02271 -17.52436 -17.00528 -16.58341 -16.20978 -15.98479 -14.93992 -14.36692 -13.91367 -13.66924 -13.51096 -13.18908 -12.69650 -12.09271 -11.98445 -11.77836 -11.53645 -11.24288 -11.08821 -11.03167 -10.91810 -10.77358 -10.39485 -10.28222 -9.72160 -9.50461 -8.80652 -8.61975 -8.39950 -6.94730 -6.23902 -4.34529 1.27933 1.60527 2.58491 3.14826 3.17854 3.26396 3.30275 3.84054 4.06804 4.27193 4.87766 5.04151 5.06918 5.26263 5.48293 5.53202 5.70677 5.86448 6.05187 6.14130 6.31017 6.35923 6.46235 6.60539 6.63416 6.66367 6.73030 6.80799 6.96583 7.21993 7.36267 7.55721 7.78306 7.93357 8.14773 8.46430 8.72926 9.33258 10.80352 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.005826 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.593187 B = 4804.855146 C = 5050.529483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.066 0.934 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.542 5.542 13 C 0.112 3.888 14 C 0.526 3.474 15 N -0.577 5.577 16 C 0.080 3.920 17 C -0.099 4.099 18 C -0.112 4.112 19 C -0.136 4.136 20 C -0.076 4.076 21 C -0.022 4.022 22 O -0.229 6.229 23 H 0.037 0.963 24 H 0.014 0.986 25 H 0.098 0.902 26 H 0.266 0.734 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 0.819 10.449 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.070 0.930 4 C -0.571 4.571 5 H 0.084 0.916 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.263 5.263 13 C -0.030 4.030 14 C 0.226 3.774 15 N -0.322 5.322 16 C -0.034 4.034 17 C -0.120 4.120 18 C -0.132 4.132 19 C -0.155 4.155 20 C -0.095 4.095 21 C -0.073 4.073 22 O -0.121 6.121 23 H 0.056 0.944 24 H 0.033 0.967 25 H 0.117 0.883 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.069 0.268 10.292 11.071 hybrid contribution 0.310 0.334 -1.260 1.340 sum 4.379 0.602 9.032 10.056 Atomic orbital electron populations 1.22128 0.97241 1.00203 1.01168 1.19172 0.91741 0.93247 0.79417 0.92967 1.21339 1.32401 1.13582 0.89822 0.91631 1.24900 0.94642 0.94914 0.99123 1.69871 1.35933 1.22497 1.24106 0.86353 0.78694 0.79638 0.82270 1.19617 1.20703 1.20783 1.46536 1.47842 1.11312 1.20580 1.21573 0.99732 0.79304 1.02346 1.21833 0.88998 0.78238 0.88368 1.71120 1.23460 1.29539 1.08054 1.19795 0.97830 0.89386 0.96363 1.20084 0.98502 0.98961 0.94470 1.20854 0.99917 0.92498 0.99888 1.20706 1.01408 0.98827 0.94583 1.19769 0.97596 0.94834 0.97270 1.20058 1.00213 0.98345 0.88727 1.84507 1.57253 1.28634 1.41722 0.94426 0.96702 0.88317 0.92435 0.93492 0.89517 0.91345 0.85552 0.85546 0.85219 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.07 16 2 C 0.26 6.46 2.71 -69.08 -0.19 6.28 16 3 H 0.05 1.42 7.17 -51.93 -0.37 1.05 16 4 C -0.53 -13.83 7.99 -34.44 -0.28 -14.11 16 5 H 0.07 1.70 7.33 -52.49 -0.38 1.32 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -23.88 11.32 55.43 0.63 -23.25 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.54 -11.97 2.83 -177.74 -0.50 -12.47 16 13 C 0.11 2.06 9.54 59.85 0.57 2.64 16 14 C 0.53 11.78 8.38 -87.64 -0.73 11.05 16 15 N -0.58 -12.27 10.58 -12.13 -0.13 -12.40 16 16 C 0.08 1.55 7.23 -84.69 -0.61 0.94 16 17 C -0.10 -1.52 10.10 -39.26 -0.40 -1.92 16 18 C -0.11 -1.40 10.02 -39.60 -0.40 -1.80 16 19 C -0.14 -1.71 10.03 -39.51 -0.40 -2.10 16 20 C -0.08 -1.17 10.06 -39.55 -0.40 -1.57 16 21 C -0.02 -0.43 7.42 -38.71 -0.29 -0.72 16 22 O -0.23 -5.17 9.84 2.45 0.02 -5.15 16 23 H 0.04 0.80 7.67 -51.93 -0.40 0.40 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 26 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.09 1.58 7.02 -51.92 -0.36 1.21 16 29 H 0.07 1.20 7.60 -51.93 -0.39 0.81 16 30 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 282.86 15.07 4.26 4.26 Total: -1.00 -28.74 282.86 -7.51 -36.25 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -3.90 Total: 0.18 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.87 Total: -2.73 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.00 Total: -48.12 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.02 Total: -5.15 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.74 -7.51 -36.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.725 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds