Wall clock time and date at job start Sun Mar 29 2020 23:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46652 * 2 1 4 4 C 1.36933 * 119.99603 * 269.54852 * 3 2 1 5 5 H 1.08001 * 120.00339 * 322.08201 * 4 3 2 6 6 C 1.38817 * 119.99750 * 142.09049 * 4 3 2 7 7 N 1.31612 * 120.00066 * 156.99339 * 6 4 3 8 8 Si 1.86804 * 119.99685 * 336.99124 * 6 4 3 9 9 H 1.48498 * 109.46747 * 95.70208 * 8 6 4 10 10 H 1.48495 * 109.46775 * 215.69945 * 8 6 4 11 11 H 1.48495 * 109.47449 * 335.70121 * 8 6 4 12 12 C 1.46498 * 120.00079 * 89.55659 * 3 2 1 13 13 C 1.50696 * 109.47328 * 89.99370 * 12 3 2 14 14 N 1.29913 * 124.85618 * 89.69762 * 13 12 3 15 15 C 1.36063 * 108.79921 * 179.89647 * 14 13 12 16 16 C 1.39580 * 133.79964 * 180.09731 * 15 14 13 17 17 C 1.37692 * 119.73024 * 180.26290 * 16 15 14 18 18 C 1.38713 * 120.41716 * 0.04333 * 17 16 15 19 19 C 1.37911 * 120.48029 * 359.95857 * 18 17 16 20 20 C 1.38671 * 119.87174 * 0.02562 * 19 18 17 21 21 O 1.34232 * 124.86151 * 269.99768 * 13 12 3 22 22 H 1.09000 * 109.47271 * 60.00572 * 1 2 3 23 23 H 1.09005 * 109.46762 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47246 * 300.00173 * 1 2 3 25 25 H 1.08996 * 109.47246 * 239.99827 * 2 1 3 26 26 H 1.09001 * 109.46758 * 119.99312 * 2 1 3 27 27 H 0.97002 * 120.00146 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47184 * 209.99409 * 12 3 2 29 29 H 1.08998 * 109.47345 * 329.99565 * 12 3 2 30 30 H 1.08005 * 120.13915 * 0.31029 * 16 15 14 31 31 H 1.07997 * 119.78926 * 180.02562 * 17 16 15 32 32 H 1.08003 * 119.76183 * 179.97438 * 18 17 16 33 33 H 1.07994 * 120.06885 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2552 2.0236 -1.1859 5 1 2.6803 1.4820 -2.0179 6 6 1.9491 3.3711 -1.3186 7 7 2.5565 4.0970 -2.2331 8 14 0.6750 4.1541 -0.1991 9 1 1.3571 4.8012 0.9504 10 1 -0.0909 5.1746 -0.9587 11 1 -0.2538 3.1089 0.3009 12 6 2.2531 2.0752 1.2687 13 6 3.6731 1.8396 1.7148 14 7 4.6853 2.5893 1.3970 15 6 5.8067 2.0805 1.9758 16 6 7.1491 2.4627 1.9819 17 6 8.0693 1.7131 2.6800 18 6 7.6704 0.5813 3.3757 19 6 6.3474 0.1919 3.3784 20 6 5.4072 0.9352 2.6809 21 8 4.0741 0.8217 2.4927 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.3424 5.0385 -2.3261 28 1 2.0871 3.1440 1.1343 29 1 1.5668 1.6931 2.0243 30 1 7.4648 3.3431 1.4418 31 1 9.1081 2.0081 2.6858 32 1 8.4011 0.0009 3.9195 33 1 6.0441 -0.6902 3.9227 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958787.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:22 Heat of formation + Delta-G solvation = 64.166949 kcal Electronic energy + Delta-G solvation = -17614.490055 eV Core-core repulsion = 14835.759580 eV Total energy + Delta-G solvation = -2778.730475 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.63687 -37.72506 -36.40673 -34.09655 -32.02858 -30.79233 -30.37000 -28.94439 -26.63507 -23.94970 -22.80964 -22.07188 -21.25854 -20.15709 -17.72481 -17.20093 -16.64598 -16.18864 -15.48295 -15.06059 -14.53053 -13.96156 -13.67708 -13.42161 -13.34612 -12.65797 -12.35095 -12.19530 -12.06268 -11.87683 -11.49286 -11.15426 -10.98136 -10.89241 -10.60398 -10.26759 -10.12458 -9.76937 -9.70106 -8.64313 -8.52127 -8.04087 -7.15287 -6.10360 -3.54673 1.05234 1.51239 2.93636 3.04560 3.24773 3.40077 3.42978 3.97059 4.41421 4.41787 4.84740 4.88257 5.03866 5.23881 5.36260 5.41195 5.50626 5.71752 5.81399 5.85686 6.04442 6.17628 6.18692 6.27032 6.39473 6.41100 6.51530 6.61712 6.69531 6.72847 6.95785 6.97505 7.86686 8.24701 8.35185 8.77199 9.55270 9.88412 11.04027 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.007589 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.237916 B = 3688.670853 C = 4262.395925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.140 3.860 3 N -0.580 5.580 4 C -0.281 4.281 5 H 0.081 0.919 6 C 0.052 3.948 7 N -0.878 5.878 8 Si 0.862 3.138 9 H -0.279 1.279 10 H -0.294 1.294 11 H -0.260 1.260 12 C 0.210 3.790 13 C 0.255 3.745 14 N -0.473 5.473 15 C 0.032 3.968 16 C -0.068 4.068 17 C -0.127 4.127 18 C -0.112 4.112 19 C -0.093 4.093 20 C -0.008 4.008 21 O -0.222 6.222 22 H 0.059 0.941 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.267 0.733 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 -6.598 11.117 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.409 4.409 5 H 0.099 0.901 6 C -0.152 4.152 7 N -0.517 5.517 8 Si 0.690 3.310 9 H -0.207 1.207 10 H -0.221 1.221 11 H -0.185 1.185 12 C 0.081 3.919 13 C 0.040 3.960 14 N -0.201 5.201 15 C -0.080 4.080 16 C -0.087 4.087 17 C -0.147 4.147 18 C -0.131 4.131 19 C -0.112 4.112 20 C -0.059 4.059 21 O -0.114 6.114 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.652 -5.921 10.576 12.983 hybrid contribution -0.485 0.003 0.847 0.976 sum 4.167 -5.918 11.423 13.523 Atomic orbital electron populations 1.22274 0.98632 0.99676 1.01997 1.21004 0.92401 0.85305 0.99741 1.44273 1.72438 1.12139 1.01133 1.18721 1.38478 0.93750 0.90001 0.90106 1.25418 0.97021 0.96507 0.96207 1.69877 1.39211 1.07065 1.35506 0.87137 0.83764 0.79459 0.80628 1.20717 1.22097 1.18454 1.20491 0.82325 0.99917 0.89189 1.29244 1.00548 0.80494 0.85676 1.70855 0.96902 1.29401 1.22965 1.20177 0.94971 0.94420 0.98430 1.20318 0.89124 1.00219 0.98999 1.20915 0.99331 0.95771 0.98647 1.20839 0.94319 0.97499 1.00405 1.19776 0.90742 0.99942 1.00754 1.20458 0.83114 0.99369 1.02952 1.84571 1.21008 1.47658 1.58210 0.92143 0.93789 0.93748 0.92459 0.93951 0.92335 0.88285 0.90575 0.85029 0.85193 0.84977 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 10.24 37.16 0.38 -2.49 16 2 C 0.14 2.73 6.39 -4.04 -0.03 2.70 16 3 N -0.58 -13.58 2.05 -174.61 -0.36 -13.94 16 4 C -0.28 -7.75 9.90 -15.06 -0.15 -7.90 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.05 1.47 5.29 -17.43 -0.09 1.38 16 7 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 8 Si 0.86 21.06 25.10 -169.99 -4.27 16.79 16 9 H -0.28 -6.72 6.68 56.52 0.38 -6.34 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 12 C 0.21 4.63 5.14 -5.20 -0.03 4.60 16 13 C 0.25 5.72 7.82 -13.09 -0.10 5.62 16 14 N -0.47 -11.36 11.34 -8.70 -0.10 -11.46 16 15 C 0.03 0.67 7.24 -84.71 -0.61 0.05 16 16 C -0.07 -1.13 10.10 -39.28 -0.40 -1.52 16 17 C -0.13 -1.65 10.02 -39.61 -0.40 -2.05 16 18 C -0.11 -1.37 10.02 -39.53 -0.40 -1.77 16 19 C -0.09 -1.36 10.06 -39.54 -0.40 -1.75 16 20 C -0.01 -0.15 7.43 -38.64 -0.29 -0.43 16 21 O -0.22 -4.55 10.77 3.62 0.04 -4.52 16 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 26 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 27 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.10 2.36 3.37 -51.93 -0.18 2.18 16 29 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 30 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 284.34 15.07 4.28 4.28 Total: -1.00 -31.92 284.34 -6.10 -38.02 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.97 Total: 0.14 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.50 Total: -3.57 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.32 Total: -51.15 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: 0.04 Total: -4.52 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.27 Total: 16.79 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.92 -6.10 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958787.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.187 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds