Wall clock time and date at job start Sun Mar 29 2020 22:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48507 * 109.46848 * 266.37743 * 3 2 1 5 5 H 1.48502 * 109.47201 * 26.37337 * 3 2 1 6 6 H 1.48496 * 109.47449 * 146.37555 * 3 2 1 7 7 C 1.38788 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00147 * 343.45068 * 7 2 1 9 9 N 1.36850 * 120.00263 * 163.45074 * 7 2 1 10 10 C 1.46916 * 120.51555 * 331.22423 * 9 7 2 11 11 C 1.53429 * 107.81615 * 224.72278 * 10 9 7 12 12 H 1.08996 * 109.57546 * 56.77532 * 11 10 9 13 13 C 1.50700 * 109.57531 * 177.02755 * 11 10 9 14 14 N 1.34776 * 120.00196 * 179.97438 * 13 11 10 15 15 O 1.21281 * 120.00335 * 0.02562 * 13 11 10 16 16 C 1.52867 * 108.83538 * 296.83186 * 11 10 9 17 17 C 1.50595 * 110.53385 * 51.03667 * 16 11 10 18 18 C 1.38445 * 118.95320 * 159.24786 * 17 16 11 19 19 C 1.38171 * 120.31180 * 179.89149 * 18 17 16 20 20 C 1.38347 * 120.19420 * 0.27244 * 19 18 17 21 21 C 1.37966 * 119.92973 * 0.08664 * 20 19 18 22 22 C 1.38771 * 121.48790 * 339.84166 * 17 16 11 23 23 H 0.96999 * 120.00133 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.79110 * 344.30257 * 10 9 7 25 25 H 1.09005 * 109.78926 * 105.08865 * 10 9 7 26 26 H 0.96999 * 119.99838 * 0.02562 * 14 13 11 27 27 H 0.97002 * 120.00271 * 180.02562 * 14 13 11 28 28 H 1.09006 * 109.30293 * 171.55431 * 16 11 10 29 29 H 1.08997 * 109.30671 * 291.15391 * 16 11 10 30 30 H 1.07994 * 119.83920 * 0.16412 * 18 17 16 31 31 H 1.08007 * 119.89870 * 180.29420 * 19 18 17 32 32 H 1.08004 * 120.03779 * 180.10256 * 20 19 18 33 33 H 1.08003 * 120.00027 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.5740 2.0021 -1.3974 5 1 1.4111 2.6736 0.6219 6 1 3.5070 1.4635 0.7752 7 6 2.0098 -1.2020 0.0005 8 1 1.5034 -2.1178 0.2674 9 7 3.3358 -1.2267 -0.3370 10 6 3.8885 -0.2295 -1.2635 11 6 4.7889 -0.9662 -2.2638 12 1 4.2144 -1.7422 -2.7695 13 6 5.3204 0.0115 -3.2800 14 7 6.1391 -0.4152 -4.2618 15 8 5.0123 1.1827 -3.2137 16 6 5.9544 -1.6003 -1.5047 17 6 5.4483 -2.4086 -0.3391 18 6 6.2630 -3.3893 0.2005 19 6 5.8278 -4.1459 1.2715 20 6 4.5711 -3.9324 1.8094 21 6 3.7490 -2.9624 1.2740 22 6 4.1842 -2.1992 0.1937 23 1 -0.4850 0.8400 -0.0004 24 1 3.0782 0.2699 -1.7946 25 1 4.4741 0.5044 -0.7096 26 1 6.3859 -1.3518 -4.3147 27 1 6.4816 0.2142 -4.9157 28 1 6.5142 -2.2480 -2.1795 29 1 6.6114 -0.8148 -1.1315 30 1 7.2450 -3.5607 -0.2150 31 1 6.4707 -4.9061 1.6903 32 1 4.2342 -4.5242 2.6477 33 1 2.7676 -2.7950 1.6927 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075637726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:33 Heat of formation + Delta-G solvation = -3.244202 kcal Electronic energy + Delta-G solvation = -18008.068648 eV Core-core repulsion = 15226.415006 eV Total energy + Delta-G solvation = -2781.653642 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09091 -38.65761 -35.93040 -34.12360 -33.20641 -31.88473 -29.87492 -28.95060 -25.78465 -24.00702 -23.64843 -21.03293 -20.48333 -19.12443 -17.39547 -17.30632 -16.67408 -16.00521 -15.49458 -14.94369 -14.46827 -13.90511 -13.64787 -13.53090 -13.33994 -13.13053 -12.41535 -12.23679 -12.22884 -12.06823 -11.30834 -11.00662 -10.66804 -10.56229 -10.24353 -10.01814 -9.89056 -9.63792 -9.55795 -9.37406 -8.63138 -7.94854 -6.71231 -6.44886 -3.84689 2.23393 2.45557 2.78051 3.22777 3.29683 3.32986 3.58225 4.15357 4.44184 4.60554 4.87112 5.00723 5.15930 5.35112 5.56291 5.64476 5.75636 5.86439 5.93367 6.02710 6.25545 6.30253 6.44435 6.54768 6.67749 6.82374 6.88788 7.20447 7.32319 7.36939 7.45935 7.66610 7.78862 8.10379 8.35978 8.52665 9.17837 9.44011 10.65441 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.013292 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.357893 B = 2106.002349 C = 3649.839716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.052 3.948 3 Si 0.878 3.122 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.309 4.309 8 H 0.109 0.891 9 N -0.472 5.472 10 C 0.114 3.886 11 C -0.125 4.125 12 H 0.107 0.893 13 C 0.527 3.473 14 N -0.857 5.857 15 O -0.540 6.540 16 C -0.046 4.046 17 C -0.203 4.203 18 C -0.067 4.067 19 C -0.226 4.226 20 C -0.075 4.075 21 C -0.192 4.192 22 C 0.220 3.780 23 H 0.275 0.725 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.401 0.599 27 H 0.398 0.602 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.911 -4.292 -4.902 13.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.153 4.153 3 Si 0.705 3.295 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.436 4.436 8 H 0.126 0.874 9 N -0.163 5.163 10 C -0.010 4.010 11 C -0.147 4.147 12 H 0.125 0.875 13 C 0.311 3.689 14 N -0.421 5.421 15 O -0.416 6.416 16 C -0.083 4.083 17 C -0.210 4.210 18 C -0.086 4.086 19 C -0.248 4.248 20 C -0.095 4.095 21 C -0.215 4.215 22 C 0.107 3.893 23 H 0.086 0.914 24 H 0.113 0.887 25 H 0.078 0.922 26 H 0.229 0.771 27 H 0.228 0.772 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.161 -3.228 -4.803 12.572 hybrid contribution 0.574 0.656 -0.318 0.928 sum 11.734 -2.572 -5.121 13.059 Atomic orbital electron populations 1.69760 1.05944 1.28167 1.46589 1.25320 0.95391 0.98483 0.96147 0.87080 0.79821 0.83074 0.79538 1.18861 1.21754 1.18996 1.19081 0.81704 0.96193 1.46597 0.87397 1.42775 1.07052 1.26923 1.39542 1.21854 0.97266 0.91210 0.90706 1.21651 0.99038 0.98341 0.95674 0.87510 1.20671 0.77481 0.89138 0.81566 1.43880 1.52134 1.13926 1.32150 1.90754 1.58105 1.18443 1.74319 1.20067 0.95346 0.97934 0.94974 1.18829 0.95937 1.03933 1.02259 1.20455 0.97482 0.94622 0.95998 1.20415 0.97738 1.04799 1.01805 1.20726 0.93927 0.96567 0.98252 1.20747 1.01840 1.00475 0.98457 1.17731 0.88513 0.91567 0.91441 0.91433 0.88741 0.92217 0.77062 0.77209 0.91238 0.91761 0.87900 0.88135 0.87674 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.91 13.97 55.49 0.77 -24.13 16 2 C 0.05 1.44 5.28 -17.45 -0.09 1.35 16 3 Si 0.88 21.81 24.12 -169.99 -4.10 17.71 16 4 H -0.26 -6.53 6.45 56.52 0.36 -6.17 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.63 6.62 56.52 0.37 -6.25 16 7 C -0.31 -8.30 9.04 -15.11 -0.14 -8.43 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.47 -11.32 2.75 -112.55 -0.31 -11.63 16 10 C 0.11 2.53 2.68 -3.59 -0.01 2.53 16 11 C -0.12 -2.17 2.70 -91.62 -0.25 -2.42 16 12 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 13 C 0.53 8.54 7.41 -10.99 -0.08 8.45 16 14 N -0.86 -9.03 8.78 31.22 0.27 -8.76 16 15 O -0.54 -11.17 16.82 5.56 0.09 -11.07 16 16 C -0.05 -0.71 4.94 -28.00 -0.14 -0.85 16 17 C -0.20 -3.80 5.76 -104.40 -0.60 -4.40 16 18 C -0.07 -1.12 9.66 -39.53 -0.38 -1.50 16 19 C -0.23 -3.82 10.04 -39.57 -0.40 -4.21 16 20 C -0.08 -1.37 10.04 -39.64 -0.40 -1.77 16 21 C -0.19 -4.09 9.20 -39.31 -0.36 -4.45 16 22 C 0.22 4.85 6.32 -83.78 -0.53 4.32 16 23 H 0.28 7.42 8.31 -40.82 -0.34 7.09 16 24 H 0.09 2.28 5.02 -51.93 -0.26 2.02 16 25 H 0.06 1.38 6.37 -51.93 -0.33 1.05 16 26 H 0.40 3.02 8.47 -40.82 -0.35 2.68 16 27 H 0.40 3.55 8.93 -40.82 -0.36 3.19 16 28 H 0.07 0.83 7.83 -51.93 -0.41 0.42 16 29 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.10 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.10 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 33 H 0.12 2.78 6.63 -52.48 -0.35 2.43 16 LS Contribution 268.85 15.07 4.05 4.05 Total: -1.00 -31.34 268.85 -6.33 -37.68 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -3.74 Total: 7.56 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -3.38 Total: -11.40 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.74 Total: -44.52 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.10 Total: 17.71 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.34 -6.33 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075637726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.432 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds