Wall clock time and date at job start Sun Mar 29 2020 22:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48507 * 109.46848 * 266.37743 * 3 2 1 5 5 H 1.48502 * 109.47201 * 26.37337 * 3 2 1 6 6 H 1.48496 * 109.47449 * 146.37555 * 3 2 1 7 7 C 1.38788 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00147 * 343.45068 * 7 2 1 9 9 N 1.36850 * 120.00263 * 163.45074 * 7 2 1 10 10 C 1.46916 * 120.51555 * 331.22423 * 9 7 2 11 11 C 1.53429 * 107.81615 * 224.72278 * 10 9 7 12 12 H 1.08996 * 109.57546 * 56.77532 * 11 10 9 13 13 C 1.50700 * 109.57531 * 177.02755 * 11 10 9 14 14 N 1.34776 * 120.00196 * 179.97438 * 13 11 10 15 15 O 1.21281 * 120.00335 * 0.02562 * 13 11 10 16 16 C 1.52867 * 108.83538 * 296.83186 * 11 10 9 17 17 C 1.50595 * 110.53385 * 51.03667 * 16 11 10 18 18 C 1.38445 * 118.95320 * 159.24786 * 17 16 11 19 19 C 1.38171 * 120.31180 * 179.89149 * 18 17 16 20 20 C 1.38347 * 120.19420 * 0.27244 * 19 18 17 21 21 C 1.37966 * 119.92973 * 0.08664 * 20 19 18 22 22 C 1.38771 * 121.48790 * 339.84166 * 17 16 11 23 23 H 0.96999 * 120.00133 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.79110 * 344.30257 * 10 9 7 25 25 H 1.09005 * 109.78926 * 105.08865 * 10 9 7 26 26 H 0.96999 * 119.99838 * 0.02562 * 14 13 11 27 27 H 0.97002 * 120.00271 * 180.02562 * 14 13 11 28 28 H 1.09006 * 109.30293 * 171.55431 * 16 11 10 29 29 H 1.08997 * 109.30671 * 291.15391 * 16 11 10 30 30 H 1.07994 * 119.83920 * 0.16412 * 18 17 16 31 31 H 1.08007 * 119.89870 * 180.29420 * 19 18 17 32 32 H 1.08004 * 120.03779 * 180.10256 * 20 19 18 33 33 H 1.08003 * 120.00027 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.5740 2.0021 -1.3974 5 1 1.4111 2.6736 0.6219 6 1 3.5070 1.4635 0.7752 7 6 2.0098 -1.2020 0.0005 8 1 1.5034 -2.1178 0.2674 9 7 3.3358 -1.2267 -0.3370 10 6 3.8885 -0.2295 -1.2635 11 6 4.7889 -0.9662 -2.2638 12 1 4.2144 -1.7422 -2.7695 13 6 5.3204 0.0115 -3.2800 14 7 6.1391 -0.4152 -4.2618 15 8 5.0123 1.1827 -3.2137 16 6 5.9544 -1.6003 -1.5047 17 6 5.4483 -2.4086 -0.3391 18 6 6.2630 -3.3893 0.2005 19 6 5.8278 -4.1459 1.2715 20 6 4.5711 -3.9324 1.8094 21 6 3.7490 -2.9624 1.2740 22 6 4.1842 -2.1992 0.1937 23 1 -0.4850 0.8400 -0.0004 24 1 3.0782 0.2699 -1.7946 25 1 4.4741 0.5044 -0.7096 26 1 6.3859 -1.3518 -4.3147 27 1 6.4816 0.2142 -4.9157 28 1 6.5142 -2.2480 -2.1795 29 1 6.6114 -0.8148 -1.1315 30 1 7.2450 -3.5607 -0.2150 31 1 6.4707 -4.9061 1.6903 32 1 4.2342 -4.5242 2.6477 33 1 2.7676 -2.7950 1.6927 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075637726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:33 Heat of formation + Delta-G solvation = -27.047988 kcal Electronic energy + Delta-G solvation = -18009.100858 eV Core-core repulsion = 15226.415006 eV Total energy + Delta-G solvation = -2782.685852 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.52719 -40.08093 -37.53815 -35.59318 -34.52496 -33.69351 -31.36821 -30.49845 -27.54918 -25.42598 -25.30577 -22.64246 -21.81177 -20.56030 -19.12962 -18.60355 -18.11054 -17.51226 -17.07189 -16.46442 -16.05296 -15.37181 -15.26618 -15.03857 -14.86014 -14.68180 -14.12958 -13.94388 -13.68846 -13.67744 -12.98370 -12.66040 -12.29812 -12.23090 -11.92401 -11.75413 -11.50628 -11.19447 -10.96755 -10.69917 -10.49664 -9.39765 -8.53713 -8.42540 -5.90107 0.75036 0.91398 1.24702 1.26317 1.29746 1.53199 2.11387 2.35708 2.80465 2.93802 3.22872 3.53095 3.80730 3.94488 4.20906 4.28792 4.35317 4.50453 4.53434 4.60396 4.80348 4.90011 4.98109 5.01842 5.18685 5.33632 5.57994 5.81167 5.86673 5.88715 5.96106 5.99073 6.38004 6.40455 6.67449 7.23706 7.31839 7.53911 8.62889 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.013292 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.357893 B = 2106.002349 C = 3649.839716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.007 3.993 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.296 4.296 8 H 0.076 0.924 9 N -0.502 5.502 10 C 0.116 3.884 11 C -0.118 4.118 12 H 0.112 0.888 13 C 0.530 3.470 14 N -0.823 5.823 15 O -0.593 6.593 16 C -0.043 4.043 17 C -0.197 4.197 18 C -0.063 4.063 19 C -0.205 4.205 20 C -0.080 4.080 21 C -0.222 4.222 22 C 0.190 3.810 23 H 0.275 0.725 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.421 0.579 27 H 0.411 0.589 28 H 0.123 0.877 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.484 -6.355 -5.854 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.194 4.194 3 Si 0.760 3.240 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.424 4.424 8 H 0.094 0.906 9 N -0.198 5.198 10 C -0.008 4.008 11 C -0.141 4.141 12 H 0.130 0.870 13 C 0.315 3.685 14 N -0.387 5.387 15 O -0.473 6.473 16 C -0.080 4.080 17 C -0.203 4.203 18 C -0.081 4.081 19 C -0.226 4.226 20 C -0.099 4.099 21 C -0.245 4.245 22 C 0.082 3.918 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.253 0.747 27 H 0.244 0.756 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.146 0.854 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.833 -5.379 -5.771 17.690 hybrid contribution -0.575 0.964 0.052 1.123 sum 15.258 -4.416 -5.719 16.882 Atomic orbital electron populations 1.69837 1.06976 1.28533 1.50400 1.25784 0.95850 1.00646 0.97093 0.86207 0.78328 0.80500 0.78924 1.19282 1.21651 1.19624 1.18853 0.83515 0.94802 1.45267 0.90641 1.42641 1.06232 1.28722 1.42238 1.21630 0.96890 0.91121 0.91136 1.21554 0.99126 0.98141 0.95230 0.86967 1.20411 0.77943 0.87929 0.82250 1.43524 1.49608 1.15370 1.30230 1.90747 1.60350 1.20406 1.75791 1.20206 0.94644 0.98511 0.94618 1.19333 0.94417 1.04056 1.02517 1.21006 0.98940 0.92877 0.95282 1.20990 0.96835 1.04203 1.00541 1.21044 0.94368 0.95693 0.98773 1.20801 1.01572 1.02559 0.99586 1.18225 0.90284 0.91014 0.92273 0.91494 0.91748 0.93972 0.74700 0.75634 0.85879 0.91049 0.83026 0.84161 0.85382 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.18 13.97 21.65 0.30 -55.88 16 2 C 0.01 0.40 5.28 84.86 0.45 0.85 16 3 Si 0.93 48.20 24.12 68.60 1.65 49.85 16 4 H -0.27 -13.78 6.45 99.48 0.64 -13.14 16 5 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.27 -13.97 6.62 99.48 0.66 -13.31 16 7 C -0.30 -17.02 9.04 84.04 0.76 -16.26 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.66 16 9 N -0.50 -24.97 2.75 -510.00 -1.40 -26.37 16 10 C 0.12 5.30 2.68 86.44 0.23 5.53 16 11 C -0.12 -3.89 2.70 -11.44 -0.03 -3.92 16 12 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 13 C 0.53 16.02 7.41 87.66 0.65 16.67 16 14 N -0.82 -13.92 8.78 -173.53 -1.52 -15.45 16 15 O -0.59 -24.24 16.82 -3.03 -0.05 -24.29 16 16 C -0.04 -1.14 4.94 29.77 0.15 -0.99 16 17 C -0.20 -6.66 5.76 -19.72 -0.11 -6.78 16 18 C -0.06 -1.70 9.66 22.30 0.22 -1.49 16 19 C -0.21 -5.77 10.04 22.28 0.22 -5.55 16 20 C -0.08 -2.71 10.04 22.23 0.22 -2.49 16 21 C -0.22 -9.58 9.20 22.45 0.21 -9.37 16 22 C 0.19 8.31 6.32 38.29 0.24 8.55 16 23 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 24 H 0.06 3.27 5.02 -2.39 -0.01 3.26 16 25 H 0.04 2.01 6.37 -2.38 -0.02 2.00 16 26 H 0.42 3.98 8.47 -92.71 -0.79 3.20 16 27 H 0.41 5.70 8.93 -92.71 -0.83 4.87 16 28 H 0.12 2.01 7.83 -2.38 -0.02 1.99 16 29 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 30 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.09 4.50 6.63 -2.91 -0.02 4.48 16 Total: -1.00 -75.02 268.85 1.61 -73.41 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.57 Total: 13.97 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 3.20 Total: -15.25 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -2.62 Total: -97.70 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.65 Total: 49.85 kcal Total: -75.02 1.61 -73.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075637726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.366 kcal (2) G-P(sol) polarization free energy of solvation -75.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds