Wall clock time and date at job start Sun Mar 29 2020 22:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48493 * 109.47439 * 274.50090 * 3 2 1 5 5 H 1.48497 * 109.47025 * 34.50206 * 3 2 1 6 6 H 1.48506 * 109.47157 * 154.50046 * 3 2 1 7 7 C 1.37879 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00039 * 4.64205 * 7 2 1 9 9 C 1.50704 * 120.00188 * 184.65197 * 7 2 1 10 10 C 1.53003 * 115.54995 * 84.83663 * 9 7 2 11 11 O 1.42900 * 109.47137 * 65.17020 * 10 9 7 12 12 C 1.35912 * 117.00006 * 184.88347 * 11 10 9 13 13 C 1.38891 * 119.96874 * 354.65157 * 12 11 10 14 14 C 1.38289 * 120.29255 * 180.02562 * 13 12 11 15 15 C 1.37935 * 120.23662 * 0.25570 * 14 13 12 16 16 C 1.39832 * 119.93598 * 359.49591 * 15 14 13 17 17 C 1.47186 * 120.14910 * 180.27682 * 16 15 14 18 18 O 1.21245 * 119.99929 * 180.22569 * 17 16 15 19 19 C 1.38385 * 119.97100 * 174.68067 * 12 11 10 20 20 C 1.52999 * 117.49771 * 230.50642 * 9 7 2 21 21 C 1.52996 * 117.49632 * 299.16546 * 9 7 2 22 22 H 0.97001 * 119.99842 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47157 * 305.16721 * 10 9 7 24 24 H 1.09003 * 109.46587 * 185.16233 * 10 9 7 25 25 H 1.08001 * 119.85501 * 0.02562 * 13 12 11 26 26 H 1.08002 * 119.87855 * 179.97438 * 14 13 12 27 27 H 1.08003 * 120.03093 * 179.72021 * 15 14 13 28 28 H 1.08000 * 119.99099 * 0.22668 * 17 16 15 29 29 H 1.08001 * 120.11769 * 359.95320 * 19 12 11 30 30 H 1.08996 * 117.49882 * 215.00214 * 20 9 7 31 31 H 1.09008 * 117.50019 * 0.02562 * 20 9 7 32 32 H 1.09004 * 117.50176 * 359.97438 * 21 9 7 33 33 H 1.08999 * 117.49718 * 144.97718 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4015 2.1014 -1.3957 5 1 1.4974 2.6233 0.7930 6 1 3.5910 1.4145 0.6028 7 6 2.0045 -1.1940 -0.0005 8 1 1.4672 -2.1278 -0.0766 9 6 3.5078 -1.1963 0.1053 10 6 4.0693 -1.1295 1.5270 11 8 3.7119 -2.3172 2.2366 12 6 4.0471 -2.3743 3.5525 13 6 4.8038 -1.3574 4.1204 14 6 5.1491 -1.4089 5.4585 15 6 4.7490 -2.4738 6.2386 16 6 3.9825 -3.5003 5.6782 17 6 3.5479 -4.6357 6.5078 18 8 2.8868 -5.5263 6.0180 19 6 3.6348 -3.4457 4.3251 20 6 4.2873 -2.0168 -0.9243 21 6 4.2947 -0.4879 -0.9991 22 1 -0.4850 0.8401 0.0004 23 1 3.6562 -0.2613 2.0404 24 1 5.1552 -1.0443 1.4850 25 1 5.1239 -0.5228 3.5144 26 1 5.7381 -0.6148 5.8932 27 1 5.0244 -2.5129 7.2822 28 1 3.8179 -4.6754 7.5527 29 1 3.0461 -4.2368 3.8846 30 1 5.2001 -2.5089 -0.5889 31 1 3.7127 -2.5547 -1.6785 32 1 3.7252 -0.0206 -1.8025 33 1 5.2123 0.0261 -0.7128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854538.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:21 Heat of formation + Delta-G solvation = -17.030324 kcal Electronic energy + Delta-G solvation = -17072.020003 eV Core-core repulsion = 14257.475799 eV Total energy + Delta-G solvation = -2814.544204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05100 -38.84830 -37.35645 -36.04197 -32.13927 -31.19310 -30.14775 -27.08527 -25.50544 -24.58067 -22.27977 -21.70508 -20.84974 -19.08024 -17.88551 -16.69157 -16.25227 -15.74771 -15.42859 -15.11777 -14.89211 -14.52437 -14.15758 -13.82343 -13.66388 -12.92676 -12.66416 -12.38306 -12.15610 -11.85726 -11.20391 -11.18637 -10.90746 -10.61757 -10.49036 -10.17648 -9.86142 -9.63227 -9.15073 -8.97290 -8.66085 -8.56166 -7.97088 -6.14213 -4.16881 0.67025 1.53744 2.48291 3.21378 3.30907 3.32337 3.55925 3.90792 4.26188 4.35336 4.83546 4.88873 5.03066 5.08152 5.13120 5.26520 5.49414 5.58552 5.66879 5.83767 5.84908 5.96087 6.07795 6.18620 6.30000 6.36938 6.38882 6.48997 6.62152 6.79494 6.91345 7.03142 7.37493 7.65664 7.90547 8.47731 8.92051 9.47237 10.97852 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.005974 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.926143 B = 4686.149001 C = 4764.757680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.482 4.482 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.099 3.901 11 O -0.287 6.287 12 C 0.134 3.866 13 C -0.185 4.185 14 C -0.095 4.095 15 C -0.123 4.123 16 C -0.159 4.159 17 C 0.384 3.616 18 O -0.458 6.458 19 C -0.098 4.098 20 C -0.173 4.173 21 C -0.190 4.190 22 H 0.265 0.735 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.105 0.895 29 H 0.140 0.860 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.140 -1.466 11.207 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.185 1.185 7 C -0.519 4.519 8 H 0.099 0.901 9 C -0.004 4.004 10 C 0.024 3.976 11 O -0.199 6.199 12 C 0.087 3.913 13 C -0.204 4.204 14 C -0.113 4.113 15 C -0.141 4.141 16 C -0.160 4.160 17 C 0.242 3.758 18 O -0.330 6.330 19 C -0.116 4.116 20 C -0.211 4.211 21 C -0.227 4.227 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.122 0.878 29 H 0.158 0.842 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.495 -1.969 10.794 15.892 hybrid contribution 0.586 1.478 -0.007 1.590 sum 12.081 -0.491 10.787 16.204 Atomic orbital electron populations 1.69898 1.06302 1.27064 1.49801 1.25006 0.94632 0.98938 0.94111 0.86897 0.80495 0.83701 0.78495 1.20305 1.21873 1.18459 1.20236 0.86299 0.94755 1.50603 0.90133 1.19278 0.95159 1.00963 0.84993 1.22774 0.96131 0.85017 0.93674 1.86256 1.75503 1.40944 1.17151 1.19151 0.92952 0.93906 0.85270 1.21608 1.01925 0.99998 0.96842 1.20852 0.99304 0.97986 0.93152 1.21120 0.99155 0.94024 0.99828 1.20669 1.02272 0.98411 0.94631 1.24052 0.75796 0.82625 0.93309 1.90537 1.29276 1.36652 1.76562 1.20726 1.00552 0.98190 0.92180 1.22835 1.01346 0.92650 1.04220 1.23003 1.01248 0.95258 1.03199 0.92504 0.92289 0.94338 0.85172 0.85558 0.85366 0.87844 0.84169 0.90749 0.89170 0.88924 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 20.97 24.94 -169.99 -4.24 16.73 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -5.72 5.69 56.52 0.32 -5.39 16 7 C -0.48 -13.47 9.36 -34.44 -0.32 -13.79 16 8 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.00 -0.07 1.03 -155.66 -0.16 -0.23 16 10 C 0.10 2.05 4.18 37.16 0.16 2.20 16 11 O -0.29 -6.10 10.06 -19.46 -0.20 -6.29 16 12 C 0.13 2.41 6.67 -39.29 -0.26 2.15 16 13 C -0.18 -2.78 9.03 -39.32 -0.36 -3.13 16 14 C -0.09 -1.13 10.02 -39.67 -0.40 -1.52 16 15 C -0.12 -1.33 9.79 -39.10 -0.38 -1.72 16 16 C -0.16 -2.09 5.87 -105.08 -0.62 -2.71 16 17 C 0.38 4.40 11.46 34.36 0.39 4.79 16 18 O -0.46 -7.19 17.16 5.59 0.10 -7.09 16 19 C -0.10 -1.63 9.54 -38.94 -0.37 -2.00 16 20 C -0.17 -3.50 9.96 -26.69 -0.27 -3.76 16 21 C -0.19 -3.87 7.31 -26.70 -0.20 -4.06 16 22 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 23 H 0.06 1.25 6.53 -51.93 -0.34 0.91 16 24 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 25 H 0.13 1.85 6.30 -52.49 -0.33 1.52 16 26 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 28 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.14 2.48 7.65 -52.49 -0.40 2.08 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.84 8.14 -51.92 -0.42 1.41 16 32 H 0.09 1.96 7.13 -51.93 -0.37 1.59 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 285.96 15.07 4.31 4.31 Total: -1.00 -32.12 285.96 -6.15 -38.27 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.01 Total: 2.16 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -2.88 Total: -21.74 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.77 Total: -26.34 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.10 Total: -13.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.24 Total: 16.73 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.12 -6.15 -38.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854538.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.236 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds