Wall clock time and date at job start Sun Mar 29 2020 22:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99818 * 2 1 4 4 H 1.48499 * 109.47231 * 269.99843 * 3 2 1 5 5 H 1.48499 * 109.47100 * 30.00272 * 3 2 1 6 6 H 1.48508 * 109.46885 * 150.00174 * 3 2 1 7 7 C 1.37881 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00307 * 172.57856 * 7 2 1 9 9 C 1.50691 * 119.99504 * 352.57472 * 7 2 1 10 10 C 1.53005 * 115.55395 * 294.64378 * 9 7 2 11 11 O 1.42892 * 109.47264 * 275.56344 * 10 9 7 12 12 C 1.35603 * 116.99948 * 184.84993 * 11 10 9 13 13 C 1.38686 * 120.16856 * 354.89835 * 12 11 10 14 14 C 1.38057 * 120.10900 * 179.97438 * 13 12 11 15 15 C 1.38632 * 120.45384 * 0.04570 * 14 13 12 16 16 C 1.37672 * 120.33927 * 359.95462 * 15 14 13 17 17 C 1.40020 * 119.88098 * 0.30034 * 16 15 14 18 18 C 1.46788 * 120.22134 * 179.72368 * 17 16 15 19 19 O 1.21290 * 120.00119 * 5.11763 * 18 17 16 20 20 C 1.53003 * 117.51872 * 80.34883 * 9 7 2 21 21 C 1.53000 * 60.00002 * 107.48299 * 20 9 7 22 22 H 0.96999 * 120.00341 * 5.00210 * 1 2 3 23 23 H 1.09005 * 109.47470 * 155.55620 * 10 9 7 24 24 H 1.09000 * 109.46567 * 35.56069 * 10 9 7 25 25 H 1.07994 * 119.94922 * 0.02562 * 13 12 11 26 26 H 1.07999 * 119.76981 * 180.02562 * 14 13 12 27 27 H 1.07999 * 119.82587 * 179.97438 * 15 14 13 28 28 H 1.08003 * 120.05902 * 180.02562 * 16 15 14 29 29 H 1.08003 * 119.99551 * 185.11788 * 18 17 16 30 30 H 1.09010 * 117.49716 * 214.96894 * 20 9 7 31 31 H 1.08994 * 117.49643 * 359.97438 * 20 9 7 32 32 H 1.09009 * 117.49409 * 252.51189 * 21 20 9 33 33 H 1.08999 * 117.52234 * 107.48537 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0777 -1.1979 -0.1213 9 6 1.2606 -2.4937 0.1675 10 6 0.5787 -2.6933 1.5226 11 8 1.5237 -3.2148 2.4591 12 6 1.0545 -3.5459 3.6875 13 6 -0.2631 -3.2767 4.0262 14 6 -0.7397 -3.6147 5.2770 15 6 0.0914 -4.2238 6.2045 16 6 1.4025 -4.4996 5.8880 17 6 1.9021 -4.1580 4.6254 18 6 3.3005 -4.4431 4.2822 19 8 4.0017 -5.0588 5.0569 20 6 0.5656 -3.0750 -1.0654 21 6 1.8364 -3.7318 -0.5226 22 1 -0.4850 0.8368 -0.0732 23 1 -0.2490 -3.3941 1.4132 24 1 0.1999 -1.7370 1.8831 25 1 -0.9178 -2.8025 3.3100 26 1 -1.7668 -3.4029 5.5348 27 1 -0.2919 -4.4836 7.1802 28 1 2.0458 -4.9747 6.6139 29 1 3.7049 -4.1046 3.3397 30 1 -0.3774 -3.5996 -0.9111 31 1 0.6462 -2.5171 -1.9983 32 1 2.7533 -3.6061 -1.0987 33 1 1.7300 -4.6884 -0.0112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:06 Heat of formation + Delta-G solvation = -25.594909 kcal Electronic energy + Delta-G solvation = -17274.739625 eV Core-core repulsion = 14459.824032 eV Total energy + Delta-G solvation = -2814.915593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04123 -38.40416 -37.21764 -35.86729 -32.14488 -31.20191 -29.88376 -26.80413 -25.40062 -24.58766 -21.93477 -21.22792 -20.77450 -19.24168 -17.78241 -16.78163 -16.02019 -15.79422 -15.24826 -14.71249 -14.58791 -14.24093 -13.95762 -13.86437 -13.59582 -13.07669 -12.48627 -12.06411 -11.82108 -11.53635 -11.19289 -11.04387 -10.92378 -10.60802 -10.41098 -10.34927 -9.66534 -9.44816 -9.04347 -8.89875 -8.66680 -8.32033 -7.94055 -6.18828 -4.23289 0.86753 1.61754 2.69776 3.21967 3.29949 3.34653 3.63423 3.99059 4.30181 4.60610 4.94849 5.02488 5.07171 5.28143 5.37445 5.39818 5.70024 5.80012 5.85150 6.01991 6.08683 6.19516 6.31022 6.42418 6.52032 6.54699 6.58171 6.63682 6.90541 6.93598 7.23404 7.30112 7.69289 7.76417 7.91504 8.25959 8.76904 9.41645 10.89433 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.021861 B = 0.006551 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.536496 B = 4272.898972 C = 4351.665702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.491 4.491 8 H 0.064 0.936 9 C 0.043 3.957 10 C 0.102 3.898 11 O -0.296 6.296 12 C 0.201 3.799 13 C -0.228 4.228 14 C -0.045 4.045 15 C -0.191 4.191 16 C -0.025 4.025 17 C -0.241 4.241 18 C 0.395 3.605 19 O -0.483 6.483 20 C -0.163 4.163 21 C -0.198 4.198 22 H 0.263 0.737 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.137 0.863 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 -5.929 7.190 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.043 3.957 10 C 0.028 3.972 11 O -0.207 6.207 12 C 0.151 3.849 13 C -0.247 4.247 14 C -0.063 4.063 15 C -0.209 4.209 16 C -0.043 4.043 17 C -0.243 4.243 18 C 0.257 3.743 19 O -0.359 6.359 20 C -0.201 4.201 21 C -0.235 4.235 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.100 0.900 25 H 0.155 0.845 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.150 0.850 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.748 -6.115 7.546 9.868 hybrid contribution -0.193 1.149 -0.175 1.178 sum -1.942 -4.966 7.370 9.097 Atomic orbital electron populations 1.69934 1.05936 1.27171 1.49015 1.24997 0.94887 0.99146 0.94322 0.86578 0.80132 0.83076 0.78299 1.20525 1.21067 1.19553 1.20481 0.93433 0.88492 1.50459 0.91765 1.18737 0.98187 0.92303 0.86473 1.22802 0.88906 0.97231 0.88297 1.86085 1.39882 1.75719 1.19012 1.19467 0.91524 0.88377 0.85516 1.21424 0.95870 1.08043 0.99333 1.21172 0.99331 0.93459 0.92333 1.20911 0.94305 1.05315 1.00350 1.21193 0.95094 0.93661 0.94348 1.20253 0.97589 1.10846 0.95625 1.23852 0.85875 0.74344 0.90254 1.90456 1.60952 1.32278 1.52238 1.22767 0.93693 1.03460 1.00149 1.22838 0.97553 0.96923 1.06175 0.92723 0.94435 0.89966 0.84490 0.85741 0.85893 0.84961 0.87223 0.91656 0.89602 0.90101 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.46 12.59 55.43 0.70 -22.76 16 2 C 0.07 1.81 5.23 -17.82 -0.09 1.72 16 3 Si 0.89 20.33 29.55 -169.99 -5.02 15.30 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.49 -12.77 8.82 -34.44 -0.30 -13.07 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.04 1.01 1.55 -155.66 -0.24 0.77 16 10 C 0.10 2.16 4.57 37.16 0.17 2.33 16 11 O -0.30 -5.89 9.25 -18.51 -0.17 -6.06 16 12 C 0.20 3.50 6.70 -38.58 -0.26 3.24 16 13 C -0.23 -3.59 9.02 -39.48 -0.36 -3.94 16 14 C -0.04 -0.58 10.03 -39.50 -0.40 -0.98 16 15 C -0.19 -2.39 10.02 -39.64 -0.40 -2.79 16 16 C -0.02 -0.35 9.59 -39.12 -0.38 -0.73 16 17 C -0.24 -3.92 5.88 -104.94 -0.62 -4.54 16 18 C 0.40 6.44 11.18 34.19 0.38 6.82 16 19 O -0.48 -8.70 17.18 5.55 0.10 -8.61 16 20 C -0.16 -3.52 9.88 -26.73 -0.26 -3.79 16 21 C -0.20 -4.07 9.88 -26.73 -0.26 -4.33 16 22 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 23 H 0.04 0.73 7.38 -51.93 -0.38 0.35 16 24 H 0.08 1.91 6.84 -51.93 -0.36 1.56 16 25 H 0.14 2.16 6.32 -52.49 -0.33 1.82 16 26 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.13 1.72 7.66 -52.48 -0.40 1.32 16 29 H 0.11 1.69 7.65 -52.48 -0.40 1.29 16 30 H 0.06 1.30 8.06 -51.92 -0.42 0.89 16 31 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 32 H 0.08 1.64 8.14 -51.92 -0.42 1.21 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 292.82 15.07 4.41 4.41 Total: -1.00 -27.70 292.82 -6.95 -34.65 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.95 Total: 2.34 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -3.01 Total: -19.28 kcal Atomic # 7 Polarization: -23.46 SS G_CDS: 0.70 Total: -22.76 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.08 Total: -14.67 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.70 -6.95 -34.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.058 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds