Wall clock time and date at job start Sun Mar 29 2020 22:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 119.99896 * 2 1 4 4 H 1.48501 * 109.47328 * 240.00618 * 3 2 1 5 5 H 1.48503 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46877 * 120.00380 * 3 2 1 7 7 C 1.40043 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00029 * 359.97438 * 7 2 1 10 10 O 1.21689 * 120.00116 * 359.97438 * 9 7 2 11 11 N 1.34783 * 120.00102 * 180.02562 * 9 7 2 12 12 C 1.46503 * 119.99685 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46738 * 176.63650 * 12 11 9 14 14 C 1.50700 * 115.55227 * 295.45512 * 13 12 11 15 15 C 1.38224 * 119.61857 * 284.79883 * 14 13 12 16 16 C 1.38628 * 119.16076 * 180.02562 * 15 14 13 17 17 C 1.38667 * 118.42293 * 359.97438 * 16 15 14 18 18 C 1.38187 * 119.16161 * 0.28477 * 17 16 15 19 19 N 1.31854 * 119.61712 * 104.81608 * 14 13 12 20 20 C 1.53004 * 117.49829 * 81.12713 * 13 12 11 21 21 C 1.53004 * 117.49748 * 149.78274 * 13 12 11 22 22 H 0.96989 * 120.00189 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99827 * 359.97438 * 11 9 7 24 24 H 1.08992 * 109.47255 * 56.63916 * 12 11 9 25 25 H 1.08998 * 109.46786 * 296.63399 * 12 11 9 26 26 H 1.07998 * 120.41865 * 0.03797 * 15 14 13 27 27 H 1.08002 * 120.78844 * 180.02562 * 16 15 14 28 28 H 1.07994 * 120.42239 * 180.02562 * 17 16 15 29 29 H 1.08000 * 119.61847 * 179.70017 * 18 17 16 30 30 H 1.09003 * 117.49899 * 215.00564 * 20 13 12 31 31 H 1.08996 * 117.49880 * 0.02562 * 20 13 12 32 32 H 1.09001 * 117.49821 * 359.97438 * 21 13 12 33 33 H 1.09000 * 117.49687 * 144.97051 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6966 -1.2126 5 1 1.2756 2.7465 0.0006 6 1 3.0945 1.6963 1.2124 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4804 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9492 -3.6477 -0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.2088 -6.0781 -0.0847 14 6 3.0113 -6.1559 -1.3579 15 6 2.4103 -6.6080 -2.5177 16 6 3.1575 -6.6763 -3.6833 17 6 4.4871 -6.2851 -3.6389 18 6 5.0210 -5.8489 -2.4412 19 7 4.2787 -5.7924 -1.3526 20 6 2.8945 -6.5174 1.2106 21 6 1.8111 -7.3968 0.5814 22 1 -0.4850 0.8399 0.0004 23 1 2.9192 -3.6476 -0.0009 24 1 0.5453 -4.9487 -0.8580 25 1 0.6364 -5.0005 0.9189 26 1 1.3717 -6.9040 -2.5158 27 1 2.7144 -7.0251 -4.6044 28 1 5.0989 -6.3247 -4.5280 29 1 6.0570 -5.5471 -2.3971 30 1 3.9262 -6.8626 1.1418 31 1 2.6385 -5.9791 2.1231 32 1 0.8428 -7.4366 1.0804 33 1 2.1294 -8.3207 0.0985 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169807286.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:00 Heat of formation + Delta-G solvation = 18.066388 kcal Electronic energy + Delta-G solvation = -17184.805840 eV Core-core repulsion = 14404.076294 eV Total energy + Delta-G solvation = -2780.729546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30882 -37.83130 -36.51790 -32.78558 -32.33130 -31.95423 -30.87032 -27.27232 -25.22118 -23.64640 -23.49210 -22.03793 -19.84610 -19.41831 -17.27263 -16.62511 -16.00146 -15.64657 -15.27250 -14.83177 -14.32196 -13.93664 -13.78411 -13.35135 -13.12058 -13.06336 -12.28909 -12.03540 -11.51619 -11.34525 -11.18800 -11.05313 -10.86794 -10.47868 -10.32792 -10.17714 -9.95225 -9.76485 -9.23999 -8.84177 -8.78638 -7.54573 -7.39274 -6.12437 -4.57026 1.19770 1.37822 3.19800 3.23897 3.26366 3.72582 3.90703 4.16945 4.32590 4.65025 4.77972 4.80718 4.90261 5.03004 5.15225 5.22829 5.33653 5.48221 5.61130 5.73732 5.79650 5.86570 6.01222 6.09104 6.16800 6.23429 6.30850 6.49583 6.51648 6.80341 7.49602 8.03864 8.13483 8.19875 8.41633 9.08795 9.64046 10.66844 10.85937 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023807 B = 0.006182 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.841813 B = 4528.078454 C = 5081.155600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.556 3.444 10 O -0.584 6.584 11 N -0.763 5.763 12 C 0.178 3.822 13 C -0.097 4.097 14 C 0.180 3.820 15 C -0.160 4.160 16 C -0.076 4.076 17 C -0.183 4.183 18 C 0.100 3.900 19 N -0.474 5.474 20 C -0.148 4.148 21 C -0.160 4.160 22 H 0.268 0.732 23 H 0.384 0.616 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 -13.886 -4.400 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.359 3.641 10 O -0.468 6.468 11 N -0.418 5.418 12 C 0.053 3.947 13 C -0.098 4.098 14 C 0.042 3.958 15 C -0.180 4.180 16 C -0.102 4.102 17 C -0.203 4.203 18 C -0.057 4.057 19 N -0.182 5.182 20 C -0.185 4.185 21 C -0.198 4.198 22 H 0.079 0.921 23 H 0.216 0.784 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.171 0.829 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.365 -13.476 -3.631 15.780 hybrid contribution 0.596 0.551 -1.000 1.288 sum 7.961 -12.925 -4.631 15.870 Atomic orbital electron populations 1.70014 1.07021 1.27230 1.35634 1.25694 0.94595 1.00193 0.92645 0.86456 0.79834 0.81128 0.79447 1.19352 1.20570 1.19258 1.20856 0.93551 0.89462 1.54306 0.91580 1.18193 0.87142 0.82445 0.76273 1.90587 1.14096 1.86967 1.55112 1.46079 1.08915 1.04371 1.82459 1.20303 0.91597 0.82129 1.00717 1.20320 1.00910 0.97613 0.90943 1.20167 0.89723 0.92559 0.93313 1.21893 1.01363 1.01527 0.93221 1.21533 0.94030 0.96478 0.98173 1.22087 0.96399 1.02122 0.99673 1.22728 0.99658 0.95195 0.88101 1.67427 1.06272 1.13858 1.30646 1.22944 0.97603 1.02121 0.95849 1.23064 1.00592 0.92951 1.03228 0.92149 0.78360 0.92875 0.92772 0.84860 0.85047 0.85118 0.82904 0.88442 0.88140 0.87928 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.73 11.83 55.55 0.66 -23.07 16 2 C 0.09 2.54 5.50 -17.37 -0.10 2.45 16 3 Si 0.91 20.80 29.56 -169.99 -5.02 15.78 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -16.08 9.54 -35.63 -0.34 -16.42 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.56 16.51 7.75 -12.99 -0.10 16.41 16 10 O -0.58 -19.49 15.02 5.20 0.08 -19.41 16 11 N -0.76 -18.27 5.45 -61.72 -0.34 -18.61 16 12 C 0.18 3.60 5.50 -4.04 -0.02 3.58 16 13 C -0.10 -1.52 1.74 -155.66 -0.27 -1.79 16 14 C 0.18 2.82 5.70 -82.59 -0.47 2.35 16 15 C -0.16 -2.21 9.78 -39.44 -0.39 -2.60 16 16 C -0.08 -0.90 10.18 -39.28 -0.40 -1.30 16 17 C -0.18 -2.07 10.11 -39.44 -0.40 -2.47 16 18 C 0.10 1.30 11.18 -17.55 -0.20 1.10 16 19 N -0.47 -7.46 10.07 -9.47 -0.10 -7.55 16 20 C -0.15 -2.06 9.79 -26.69 -0.26 -2.32 16 21 C -0.16 -1.98 9.93 -26.69 -0.27 -2.25 16 22 H 0.27 7.48 8.29 -40.82 -0.34 7.15 16 23 H 0.38 8.71 8.39 -40.82 -0.34 8.37 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.05 1.11 8.10 -51.93 -0.42 0.69 16 26 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 27 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 295.51 15.07 4.45 4.45 Total: -1.00 -35.80 295.51 -7.59 -43.39 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.11 Total: 8.30 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.21 Total: -3.27 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.23 Total: -49.23 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.08 Total: -19.41 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.80 -7.59 -43.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169807286.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.453 kcal (2) G-P(sol) polarization free energy of solvation -35.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds