Wall clock time and date at job start Sun Mar 29 2020 22:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 120.00118 * 2 1 4 4 C 1.53000 * 109.47058 * 124.99874 * 3 2 1 5 5 O 1.45202 * 109.47026 * 180.02562 * 4 3 2 6 6 C 1.34699 * 117.00020 * 180.02562 * 5 4 3 7 7 O 1.21465 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.47770 * 119.99865 * 180.02562 * 6 5 4 9 9 C 1.39960 * 120.03211 * 359.96817 * 8 6 5 10 10 C 1.38318 * 120.35645 * 180.02562 * 9 8 6 11 11 C 1.37762 * 120.41491 * 0.02562 * 10 9 8 12 12 C 1.40756 * 120.05325 * 359.97438 * 11 10 9 13 13 C 1.41434 * 120.18010 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99456 * 24.42865 * 13 12 11 15 15 C 1.39932 * 120.00288 * 204.42927 * 13 12 11 16 16 N 1.30824 * 120.00201 * 17.83811 * 15 13 12 17 17 Si 1.86806 * 119.99927 * 197.83727 * 15 13 12 18 18 H 1.48493 * 109.47184 * 60.00061 * 17 15 13 19 19 H 1.48506 * 109.46886 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47168 * 299.99757 * 17 15 13 21 21 C 1.39055 * 120.02826 * 179.97438 * 8 6 5 22 22 H 1.08002 * 120.00022 * 180.02562 * 1 2 3 23 23 H 1.07997 * 120.00109 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.00109 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.46478 * 4.99938 * 3 2 1 26 26 H 1.08996 * 109.47240 * 245.00218 * 3 2 1 27 27 H 1.09004 * 109.46839 * 60.00215 * 4 3 2 28 28 H 1.08996 * 109.47376 * 300.00260 * 4 3 2 29 29 H 1.07996 * 119.82478 * 0.02562 * 9 8 6 30 30 H 1.07999 * 119.79298 * 180.02562 * 10 9 8 31 31 H 1.08002 * 119.97692 * 179.97438 * 11 10 9 32 32 H 0.96997 * 120.00007 * 179.97438 * 16 15 13 33 33 H 1.07997 * 120.20489 * 359.69379 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7606 2.5908 1.1820 6 6 4.6628 2.7760 2.1649 7 8 4.8384 1.9108 2.9991 8 6 5.4383 4.0323 2.2288 9 6 5.2363 5.0299 1.2681 10 6 5.9588 6.2081 1.3213 11 6 6.8857 6.4134 2.3196 12 6 7.1028 5.4219 3.2947 13 6 8.0541 5.6296 4.3205 14 1 8.3242 6.6341 4.6110 15 6 8.6453 4.5337 4.9590 16 7 8.6015 3.3506 4.4024 17 14 9.4969 4.7601 6.6061 18 1 8.5212 5.2718 7.6016 19 1 10.0376 3.4561 7.0672 20 1 10.6096 5.7324 6.4585 21 6 6.3695 4.2244 3.2435 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8499 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 3.7399 0.5065 1.0920 28 1 2.4773 1.2356 2.1130 29 1 4.5124 4.8789 0.4811 30 1 5.7953 6.9720 0.5755 31 1 7.4462 7.3360 2.3541 32 1 9.0116 2.5910 4.8448 33 1 6.5253 3.4595 3.9899 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171484725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:45 Heat of formation + Delta-G solvation = -62.097148 kcal Electronic energy + Delta-G solvation = -16663.718897 eV Core-core repulsion = 13847.220448 eV Total energy + Delta-G solvation = -2816.498449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74378 -37.44398 -36.18298 -34.89039 -33.75711 -30.55882 -29.57942 -29.36380 -25.41705 -24.02580 -22.29207 -20.99036 -20.18946 -19.56250 -17.81311 -16.45170 -16.21685 -15.94543 -15.17927 -14.92775 -14.64443 -13.84668 -13.69965 -13.27973 -13.04090 -12.63992 -12.52365 -11.86690 -11.63655 -11.50532 -11.26869 -11.18037 -11.10857 -10.77431 -10.54035 -10.20325 -10.16762 -9.74605 -9.60305 -9.43404 -9.24515 -7.75259 -7.56962 -6.83949 -4.44973 1.98090 2.03640 2.77993 3.05683 3.07295 3.14107 3.27745 3.60292 3.89253 4.56855 4.76892 4.91184 5.11107 5.17666 5.45414 5.53253 5.62502 5.69951 5.83525 5.99518 6.13822 6.39712 6.41826 6.55050 6.63952 6.92436 6.94904 6.99924 7.15976 7.30132 7.67397 7.74535 7.89753 8.09320 8.42851 8.56447 8.75805 8.77808 10.11359 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.032844 B = 0.004864 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.308569 B = 5755.323811 C = 6482.869719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C -0.094 4.094 4 C 0.070 3.930 5 O -0.358 6.358 6 C 0.512 3.488 7 O -0.519 6.519 8 C -0.115 4.115 9 C -0.195 4.195 10 C -0.103 4.103 11 C -0.202 4.202 12 C 0.096 3.904 13 C -0.461 4.461 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.787 5.787 17 Si 0.912 3.088 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.265 1.265 21 C -0.090 4.090 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.285 0.715 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 -3.436 -5.275 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.169 4.169 3 C -0.131 4.131 4 C -0.005 4.005 5 O -0.275 6.275 6 C 0.359 3.641 7 O -0.408 6.408 8 C -0.116 4.116 9 C -0.214 4.214 10 C -0.122 4.122 11 C -0.222 4.222 12 C 0.093 3.907 13 C -0.490 4.490 14 H 0.100 0.900 15 C -0.146 4.146 16 N -0.411 5.411 17 Si 0.736 3.264 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.109 4.109 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.130 0.870 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.710 -3.976 -5.004 10.803 hybrid contribution 0.409 -0.244 0.709 0.854 sum -8.301 -4.220 -4.295 10.255 Atomic orbital electron populations 1.23884 0.95821 1.02012 1.00930 1.22801 0.96017 0.98032 1.00014 1.20691 0.97866 0.96050 0.98460 1.22827 0.93883 0.84837 0.98920 1.86569 1.50726 1.39264 1.50968 1.21870 0.76766 0.87873 0.77589 1.90758 1.65536 1.44770 1.39756 1.18844 1.00435 0.91416 1.00946 1.20562 1.04737 0.95004 1.01126 1.20510 0.97181 0.96293 0.98180 1.21185 1.02958 1.01021 0.97070 1.17535 0.91143 0.90616 0.91365 1.19542 1.19801 0.94055 1.15559 0.89957 1.25967 0.95274 0.94566 0.98765 1.69770 1.33857 1.00969 1.36495 0.86302 0.79842 0.78560 0.81689 1.18695 1.20221 1.18927 1.21655 0.92877 0.99376 0.96986 0.88316 0.88379 0.87044 0.90366 0.89769 0.91473 0.91543 0.87869 0.88525 0.88338 0.90343 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 14.32 29.02 0.42 -1.25 16 2 C -0.15 -1.49 9.52 -36.02 -0.34 -1.83 16 3 C -0.09 -1.08 6.04 -27.88 -0.17 -1.25 16 4 C 0.07 1.06 5.46 37.16 0.20 1.26 16 5 O -0.36 -6.85 9.46 -40.49 -0.38 -7.23 16 6 C 0.51 11.72 7.90 34.63 0.27 12.00 16 7 O -0.52 -12.90 16.12 -19.24 -0.31 -13.22 16 8 C -0.12 -2.81 5.87 -105.05 -0.62 -3.42 16 9 C -0.19 -4.32 9.62 -38.91 -0.37 -4.69 16 10 C -0.10 -2.24 10.01 -39.73 -0.40 -2.63 16 11 C -0.20 -4.79 9.78 -38.80 -0.38 -5.17 16 12 C 0.10 2.52 5.57 -106.87 -0.60 1.93 16 13 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 14 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 15 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 16 N -0.79 -20.64 10.96 55.55 0.61 -20.03 16 17 Si 0.91 18.58 29.60 -169.99 -5.03 13.55 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 C -0.09 -2.39 8.23 -38.42 -0.32 -2.70 16 22 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 23 H 0.10 0.81 7.84 -52.49 -0.41 0.40 16 24 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 25 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.10 2.05 7.59 -52.49 -0.40 1.65 16 30 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 33 H 0.14 3.84 5.75 -52.49 -0.30 3.54 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -28.49 295.77 -7.41 -35.90 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.02 Total: 4.91 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -2.73 Total: -18.34 kcal Atomic # 7 Polarization: -20.64 SS G_CDS: 0.61 Total: -20.03 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.69 Total: -20.45 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.49 -7.41 -35.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171484725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.198 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds