Wall clock time and date at job start Sun Mar 29 2020 22:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 120.00118 * 2 1 4 4 C 1.53000 * 109.47058 * 124.99874 * 3 2 1 5 5 O 1.45202 * 109.47026 * 180.02562 * 4 3 2 6 6 C 1.34699 * 117.00020 * 180.02562 * 5 4 3 7 7 O 1.21465 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.47770 * 119.99865 * 180.02562 * 6 5 4 9 9 C 1.39960 * 120.03211 * 359.96817 * 8 6 5 10 10 C 1.38318 * 120.35645 * 180.02562 * 9 8 6 11 11 C 1.37762 * 120.41491 * 0.02562 * 10 9 8 12 12 C 1.40756 * 120.05325 * 359.97438 * 11 10 9 13 13 C 1.41434 * 120.18010 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99456 * 24.42865 * 13 12 11 15 15 C 1.39932 * 120.00288 * 204.42927 * 13 12 11 16 16 N 1.30824 * 120.00201 * 17.83811 * 15 13 12 17 17 Si 1.86806 * 119.99927 * 197.83727 * 15 13 12 18 18 H 1.48493 * 109.47184 * 60.00061 * 17 15 13 19 19 H 1.48506 * 109.46886 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47168 * 299.99757 * 17 15 13 21 21 C 1.39055 * 120.02826 * 179.97438 * 8 6 5 22 22 H 1.08002 * 120.00022 * 180.02562 * 1 2 3 23 23 H 1.07997 * 120.00109 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.00109 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.46478 * 4.99938 * 3 2 1 26 26 H 1.08996 * 109.47240 * 245.00218 * 3 2 1 27 27 H 1.09004 * 109.46839 * 60.00215 * 4 3 2 28 28 H 1.08996 * 109.47376 * 300.00260 * 4 3 2 29 29 H 1.07996 * 119.82478 * 0.02562 * 9 8 6 30 30 H 1.07999 * 119.79298 * 180.02562 * 10 9 8 31 31 H 1.08002 * 119.97692 * 179.97438 * 11 10 9 32 32 H 0.96997 * 120.00007 * 179.97438 * 16 15 13 33 33 H 1.07997 * 120.20489 * 359.69379 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7606 2.5908 1.1820 6 6 4.6628 2.7760 2.1649 7 8 4.8384 1.9108 2.9991 8 6 5.4383 4.0323 2.2288 9 6 5.2363 5.0299 1.2681 10 6 5.9588 6.2081 1.3213 11 6 6.8857 6.4134 2.3196 12 6 7.1028 5.4219 3.2947 13 6 8.0541 5.6296 4.3205 14 1 8.3242 6.6341 4.6110 15 6 8.6453 4.5337 4.9590 16 7 8.6015 3.3506 4.4024 17 14 9.4969 4.7601 6.6061 18 1 8.5212 5.2718 7.6016 19 1 10.0376 3.4561 7.0672 20 1 10.6096 5.7324 6.4585 21 6 6.3695 4.2244 3.2435 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8499 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 3.7399 0.5065 1.0920 28 1 2.4773 1.2356 2.1130 29 1 4.5124 4.8789 0.4811 30 1 5.7953 6.9720 0.5755 31 1 7.4462 7.3360 2.3541 32 1 9.0116 2.5910 4.8448 33 1 6.5253 3.4595 3.9899 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171484725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:44 Heat of formation + Delta-G solvation = -75.899594 kcal Electronic energy + Delta-G solvation = -16664.317416 eV Core-core repulsion = 13847.220448 eV Total energy + Delta-G solvation = -2817.096968 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45791 -39.23113 -37.71925 -35.98503 -35.60086 -32.31637 -31.38225 -30.55859 -27.30224 -25.51683 -23.70518 -22.84516 -21.63660 -20.66628 -19.59967 -18.15563 -17.78030 -17.59964 -16.72691 -16.47072 -16.06605 -15.31316 -15.16227 -14.94453 -14.48191 -14.28295 -13.88856 -13.55031 -13.03816 -12.98958 -12.83572 -12.66621 -12.53428 -12.23284 -12.09567 -11.99594 -11.58632 -11.56058 -11.28736 -11.08631 -10.31535 -9.62703 -9.45372 -8.69222 -6.40527 0.11861 0.96701 1.24391 1.37622 1.47081 1.51323 1.77826 1.80238 2.18943 2.71707 3.62296 3.77523 3.89368 4.00472 4.14074 4.34161 4.37787 4.44251 4.62926 4.79092 4.80899 4.95113 5.03643 5.07007 5.13025 5.27198 5.32385 5.44269 5.70280 5.81077 5.81921 5.88856 6.00391 6.22370 6.52146 6.79589 6.85724 6.88418 8.28156 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.032844 B = 0.004864 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.308569 B = 5755.323811 C = 6482.869719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.170 4.170 3 C -0.083 4.083 4 C 0.062 3.938 5 O -0.350 6.350 6 C 0.515 3.485 7 O -0.548 6.548 8 C -0.130 4.130 9 C -0.182 4.182 10 C -0.098 4.098 11 C -0.204 4.204 12 C 0.066 3.934 13 C -0.495 4.495 14 H 0.089 0.911 15 C 0.030 3.970 16 N -0.826 5.826 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.252 1.252 21 C -0.124 4.124 22 H 0.116 0.884 23 H 0.104 0.896 24 H 0.118 0.882 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.288 0.712 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 -2.680 -6.430 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C -0.120 4.120 4 C -0.011 4.011 5 O -0.267 6.267 6 C 0.363 3.637 7 O -0.440 6.440 8 C -0.131 4.131 9 C -0.201 4.201 10 C -0.116 4.116 11 C -0.224 4.224 12 C 0.064 3.936 13 C -0.524 4.524 14 H 0.107 0.893 15 C -0.185 4.185 16 N -0.452 5.452 17 Si 0.805 3.195 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.176 1.176 21 C -0.144 4.144 22 H 0.134 0.866 23 H 0.122 0.878 24 H 0.136 0.864 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.861 -3.206 -6.195 12.078 hybrid contribution 0.588 -0.479 0.898 1.176 sum -9.273 -3.685 -5.296 11.297 Atomic orbital electron populations 1.24118 0.95456 1.03180 0.98521 1.22772 0.96466 0.97397 1.02126 1.20659 0.97136 0.97432 0.96775 1.23228 0.94107 0.83003 1.00795 1.86533 1.49785 1.41269 1.49107 1.21712 0.77043 0.87154 0.77826 1.90735 1.66599 1.45621 1.41091 1.19105 1.00258 0.92786 1.00990 1.20965 1.04406 0.94249 1.00480 1.20971 0.95553 0.96936 0.98124 1.21517 1.03260 1.00879 0.96733 1.17897 0.91688 0.91393 0.92624 1.19855 1.20826 0.94780 1.16947 0.89341 1.26875 0.95651 0.93883 1.02090 1.69867 1.35242 1.01898 1.38186 0.85207 0.78853 0.78772 0.76666 1.18438 1.19711 1.17590 1.21466 0.95235 0.99624 0.98069 0.86621 0.87780 0.86410 0.89715 0.89224 0.91642 0.91749 0.84874 0.84003 0.86581 0.90142 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 14.32 67.79 0.97 -1.64 16 2 C -0.17 -3.01 9.52 25.65 0.24 -2.76 16 3 C -0.08 -1.76 6.04 29.85 0.18 -1.58 16 4 C 0.06 1.84 5.46 71.98 0.39 2.24 16 5 O -0.35 -13.11 9.46 -56.08 -0.53 -13.64 16 6 C 0.51 23.88 7.90 70.34 0.56 24.44 16 7 O -0.55 -28.27 16.12 19.95 0.32 -27.95 16 8 C -0.13 -6.40 5.87 -20.14 -0.12 -6.52 16 9 C -0.18 -7.68 9.62 22.71 0.22 -7.46 16 10 C -0.10 -3.96 10.01 22.18 0.22 -3.73 16 11 C -0.20 -9.44 9.78 22.77 0.22 -9.22 16 12 C 0.07 3.56 5.57 -21.32 -0.12 3.44 16 13 C -0.50 -26.43 9.05 23.47 0.21 -26.22 16 14 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 15 C 0.03 1.54 5.14 85.25 0.44 1.98 16 16 N -0.83 -45.36 10.96 21.82 0.24 -45.12 16 17 Si 0.98 38.78 29.60 68.60 2.03 40.81 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 21 C -0.12 -6.88 8.23 23.02 0.19 -6.69 16 22 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 23 H 0.10 1.42 7.84 -2.91 -0.02 1.39 16 24 H 0.12 1.92 8.06 -2.91 -0.02 1.89 16 25 H 0.08 1.69 7.79 -2.39 -0.02 1.67 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.13 4.80 7.59 -2.91 -0.02 4.78 16 30 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 31 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 32 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 33 H 0.10 6.37 5.75 -2.91 -0.02 6.35 16 Total: -1.00 -63.55 295.77 6.77 -56.78 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 1.10 Total: 22.85 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 3.61 Total: -33.73 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.24 Total: -45.12 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -0.21 Total: -41.59 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -63.55 6.77 -56.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171484725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.116 kcal (2) G-P(sol) polarization free energy of solvation -63.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds