Wall clock time and date at job start Sun Mar 29 2020 23:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.47287 * 2 1 4 4 C 1.50693 * 109.46913 * 239.99720 * 2 1 3 5 5 N 1.29906 * 124.85707 * 105.00198 * 4 2 1 6 6 C 1.36057 * 108.80346 * 179.97438 * 5 4 2 7 7 C 1.39589 * 133.81075 * 179.97438 * 6 5 4 8 8 C 1.37681 * 119.73103 * 179.97438 * 7 6 5 9 9 C 1.38724 * 120.42580 * 0.03525 * 8 7 6 10 10 C 1.37907 * 120.47080 * 359.97438 * 9 8 7 11 11 C 1.38669 * 119.87738 * 0.02562 * 10 9 8 12 12 O 1.34239 * 124.85652 * 284.69757 * 4 2 1 13 13 N 1.46504 * 109.46750 * 120.00022 * 2 1 3 14 14 C 1.46500 * 119.99980 * 59.99779 * 13 2 1 15 15 C 1.36937 * 119.99666 * 240.00148 * 13 2 1 16 16 H 1.07999 * 119.99986 * 23.18751 * 15 13 2 17 17 C 1.38814 * 119.99710 * 203.19910 * 15 13 2 18 18 N 1.31618 * 120.00030 * 13.61151 * 17 15 13 19 19 Si 1.86799 * 119.99900 * 193.61240 * 17 15 13 20 20 H 1.48500 * 109.47342 * 59.99511 * 19 17 15 21 21 H 1.48503 * 109.47194 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47155 * 299.99895 * 19 17 15 23 23 H 1.08995 * 109.47098 * 300.00068 * 1 2 3 24 24 H 1.08994 * 109.46767 * 59.99999 * 1 2 3 25 25 H 1.08993 * 109.47287 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.13325 * 0.03959 * 7 6 5 27 27 H 1.08002 * 119.78974 * 180.02562 * 8 7 6 28 28 H 1.07997 * 119.76024 * 180.02562 * 9 8 7 29 29 H 1.07997 * 120.06027 * 180.02562 * 10 9 8 30 30 H 1.09002 * 109.47142 * 95.16378 * 14 13 2 31 31 H 1.08994 * 109.47224 * 335.15640 * 14 13 2 32 32 H 1.09003 * 109.46961 * 215.15924 * 14 13 2 33 33 H 0.97003 * 120.00250 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.5400 -0.1228 -2.2718 6 6 2.8845 -1.0702 -3.1855 7 6 3.4577 -1.0229 -4.4574 8 6 3.6871 -2.1923 -5.1469 9 6 3.3516 -3.4160 -4.5860 10 6 2.7844 -3.4778 -3.3305 11 6 2.5463 -2.3099 -2.6218 12 8 2.0246 -2.0414 -1.4047 13 7 2.0183 -0.6906 1.1962 14 6 1.6643 -2.0932 1.4281 15 6 2.8056 -0.0251 2.0976 16 1 2.7698 1.0528 2.1533 17 6 3.6497 -0.7360 2.9396 18 7 3.8992 -2.0063 2.7019 19 14 4.4316 0.1102 4.4100 20 1 3.3673 0.6168 5.3132 21 1 5.2831 -0.8599 5.1443 22 1 5.2655 1.2462 3.9417 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.7212 -0.0729 -4.8984 27 1 4.1309 -2.1569 -6.1309 28 1 3.5366 -4.3267 -5.1362 29 1 2.5262 -4.4340 -2.9000 30 1 2.4607 -2.7358 1.0526 31 1 0.7351 -2.3242 0.9074 32 1 1.5339 -2.2631 2.4968 33 1 4.4888 -2.5032 3.2904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181071702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:07 Heat of formation + Delta-G solvation = 61.377369 kcal Electronic energy + Delta-G solvation = -17677.947341 eV Core-core repulsion = 14899.095901 eV Total energy + Delta-G solvation = -2778.851441 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.63964 -37.75546 -36.21841 -34.15980 -32.40047 -30.35638 -29.68776 -28.55049 -26.13527 -24.41578 -22.85117 -22.48027 -21.37804 -19.75383 -17.64760 -16.93947 -16.56598 -16.11634 -15.49855 -14.88617 -13.99967 -13.95483 -13.71773 -13.39929 -13.07547 -12.52499 -12.10010 -12.06428 -11.82616 -11.52841 -11.18169 -10.96371 -10.88541 -10.81897 -10.63648 -10.51096 -10.06947 -9.98598 -9.93444 -8.70266 -8.48790 -8.03073 -7.02290 -5.87793 -3.37453 1.07372 1.53817 2.94960 3.12818 3.34034 3.38384 3.39458 3.95909 4.27028 4.42803 4.87745 5.04626 5.25354 5.30710 5.38941 5.47774 5.54254 5.69066 5.84617 5.87566 6.16483 6.21764 6.38253 6.43166 6.52422 6.57758 6.66009 6.73460 6.81680 6.96063 7.26042 7.65627 7.70581 8.19254 8.26601 9.04003 9.63759 10.12068 11.15189 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030160 B = 0.006452 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.149927 B = 4338.444332 C = 4578.585217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.247 3.753 3 H 0.109 0.891 4 C 0.275 3.725 5 N -0.513 5.513 6 C 0.032 3.968 7 C -0.074 4.074 8 C -0.126 4.126 9 C -0.114 4.114 10 C -0.088 4.088 11 C -0.005 4.005 12 O -0.198 6.198 13 N -0.576 5.576 14 C 0.157 3.843 15 C -0.271 4.271 16 H 0.076 0.924 17 C 0.010 3.990 18 N -0.896 5.896 19 Si 0.912 3.088 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.280 1.280 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.037 0.963 31 H 0.007 0.993 32 H 0.047 0.953 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 -1.445 -11.151 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.127 0.873 4 C 0.062 3.938 5 N -0.243 5.243 6 C -0.081 4.081 7 C -0.093 4.093 8 C -0.146 4.146 9 C -0.132 4.132 10 C -0.107 4.107 11 C -0.056 4.056 12 O -0.089 6.089 13 N -0.295 5.295 14 C 0.013 3.987 15 C -0.400 4.400 16 H 0.094 0.906 17 C -0.190 4.190 18 N -0.539 5.539 19 Si 0.741 3.259 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.206 1.206 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.055 0.945 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.698 -0.965 -11.040 11.683 hybrid contribution 0.688 -0.495 0.784 1.155 sum -3.010 -1.460 -10.256 10.788 Atomic orbital electron populations 1.22266 0.95441 1.02288 1.01811 1.19584 0.93410 0.95174 0.78382 0.87325 1.29176 0.91639 0.76955 0.96034 1.70710 1.19676 1.32124 1.01814 1.20045 1.02400 0.89135 0.96481 1.20217 0.98707 0.99044 0.91380 1.20900 1.01685 0.91794 1.00184 1.20842 0.99774 0.98177 0.94429 1.19844 1.01651 0.94988 0.94204 1.20529 1.01974 0.97290 0.85847 1.84682 1.65539 1.27684 1.30947 1.44270 1.57087 1.10618 1.17575 1.20909 0.95009 0.83713 0.99076 1.19278 1.17595 0.91654 1.11521 0.90596 1.25172 0.96981 0.96332 1.00545 1.70090 1.37635 1.08371 1.37769 0.86222 0.78954 0.78536 0.82162 1.20634 1.21488 1.20624 0.90801 0.92817 0.92447 0.85304 0.85261 0.84946 0.85222 0.94459 0.97400 0.93454 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.16 37.16 0.34 -2.37 16 2 C 0.25 5.22 3.26 -69.08 -0.22 4.99 16 3 H 0.11 2.26 7.86 -51.93 -0.41 1.85 16 4 C 0.28 6.07 6.99 -13.10 -0.09 5.98 16 5 N -0.51 -11.17 11.34 -8.70 -0.10 -11.27 16 6 C 0.03 0.63 7.24 -84.71 -0.61 0.01 16 7 C -0.07 -1.17 10.10 -39.28 -0.40 -1.56 16 8 C -0.13 -1.61 10.02 -39.61 -0.40 -2.00 16 9 C -0.11 -1.45 10.03 -39.52 -0.40 -1.84 16 10 C -0.09 -1.38 10.06 -39.54 -0.40 -1.78 16 11 C -0.01 -0.10 7.43 -38.64 -0.29 -0.39 16 12 O -0.20 -4.40 9.21 3.59 0.03 -4.36 16 13 N -0.58 -14.31 2.80 -174.81 -0.49 -14.80 16 14 C 0.16 3.86 7.38 59.85 0.44 4.30 16 15 C -0.27 -7.29 9.58 -15.06 -0.14 -7.43 16 16 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 17 C 0.01 0.28 5.09 -17.43 -0.09 0.19 16 18 N -0.90 -25.89 10.76 55.49 0.60 -25.29 16 19 Si 0.91 21.40 29.58 -169.99 -5.03 16.37 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.99 6.67 -51.93 -0.35 0.64 16 26 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.04 1.02 7.11 -51.93 -0.37 0.65 16 31 H 0.01 0.16 6.39 -51.93 -0.33 -0.17 16 32 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 281.38 15.07 4.24 4.24 Total: -1.00 -31.12 281.38 -6.92 -38.04 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.92 Total: -1.01 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.25 Total: -1.91 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.01 Total: -51.36 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: 0.03 Total: -4.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.12 -6.92 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181071702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.416 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds