Wall clock time and date at job start Sun Mar 29 2020 23:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.47287 * 2 1 4 4 C 1.50693 * 109.46913 * 239.99720 * 2 1 3 5 5 N 1.29906 * 124.85707 * 105.00198 * 4 2 1 6 6 C 1.36057 * 108.80346 * 179.97438 * 5 4 2 7 7 C 1.39589 * 133.81075 * 179.97438 * 6 5 4 8 8 C 1.37681 * 119.73103 * 179.97438 * 7 6 5 9 9 C 1.38724 * 120.42580 * 0.03525 * 8 7 6 10 10 C 1.37907 * 120.47080 * 359.97438 * 9 8 7 11 11 C 1.38669 * 119.87738 * 0.02562 * 10 9 8 12 12 O 1.34239 * 124.85652 * 284.69757 * 4 2 1 13 13 N 1.46504 * 109.46750 * 120.00022 * 2 1 3 14 14 C 1.46500 * 119.99980 * 59.99779 * 13 2 1 15 15 C 1.36937 * 119.99666 * 240.00148 * 13 2 1 16 16 H 1.07999 * 119.99986 * 23.18751 * 15 13 2 17 17 C 1.38814 * 119.99710 * 203.19910 * 15 13 2 18 18 N 1.31618 * 120.00030 * 13.61151 * 17 15 13 19 19 Si 1.86799 * 119.99900 * 193.61240 * 17 15 13 20 20 H 1.48500 * 109.47342 * 59.99511 * 19 17 15 21 21 H 1.48503 * 109.47194 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47155 * 299.99895 * 19 17 15 23 23 H 1.08995 * 109.47098 * 300.00068 * 1 2 3 24 24 H 1.08994 * 109.46767 * 59.99999 * 1 2 3 25 25 H 1.08993 * 109.47287 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.13325 * 0.03959 * 7 6 5 27 27 H 1.08002 * 119.78974 * 180.02562 * 8 7 6 28 28 H 1.07997 * 119.76024 * 180.02562 * 9 8 7 29 29 H 1.07997 * 120.06027 * 180.02562 * 10 9 8 30 30 H 1.09002 * 109.47142 * 95.16378 * 14 13 2 31 31 H 1.08994 * 109.47224 * 335.15640 * 14 13 2 32 32 H 1.09003 * 109.46961 * 215.15924 * 14 13 2 33 33 H 0.97003 * 120.00250 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.5400 -0.1228 -2.2718 6 6 2.8845 -1.0702 -3.1855 7 6 3.4577 -1.0229 -4.4574 8 6 3.6871 -2.1923 -5.1469 9 6 3.3516 -3.4160 -4.5860 10 6 2.7844 -3.4778 -3.3305 11 6 2.5463 -2.3099 -2.6218 12 8 2.0246 -2.0414 -1.4047 13 7 2.0183 -0.6906 1.1962 14 6 1.6643 -2.0932 1.4281 15 6 2.8056 -0.0251 2.0976 16 1 2.7698 1.0528 2.1533 17 6 3.6497 -0.7360 2.9396 18 7 3.8992 -2.0063 2.7019 19 14 4.4316 0.1102 4.4100 20 1 3.3673 0.6168 5.3132 21 1 5.2831 -0.8599 5.1443 22 1 5.2655 1.2462 3.9417 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.7212 -0.0729 -4.8984 27 1 4.1309 -2.1569 -6.1309 28 1 3.5366 -4.3267 -5.1362 29 1 2.5262 -4.4340 -2.9000 30 1 2.4607 -2.7358 1.0526 31 1 0.7351 -2.3242 0.9074 32 1 1.5339 -2.2631 2.4968 33 1 4.4888 -2.5032 3.2904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181071702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:07 Heat of formation + Delta-G solvation = 40.135984 kcal Electronic energy + Delta-G solvation = -17678.868437 eV Core-core repulsion = 14899.095901 eV Total energy + Delta-G solvation = -2779.772536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.12491 -39.05370 -37.96850 -35.69803 -34.24886 -31.57593 -31.43226 -29.95221 -28.13695 -26.01061 -24.45276 -23.90813 -22.80030 -21.39182 -19.19008 -18.64228 -18.06794 -17.66428 -17.04757 -16.54006 -15.73353 -15.41751 -15.04825 -14.93388 -14.63338 -14.27121 -13.60931 -13.38991 -13.19068 -13.07863 -12.78913 -12.65352 -12.53180 -12.44026 -12.35872 -12.24591 -11.91842 -11.87902 -11.43234 -10.73473 -9.74695 -9.37639 -9.02649 -7.92409 -5.46342 -0.22774 0.28742 1.43869 1.46333 1.51201 1.56138 1.69130 2.44071 2.70573 2.85994 3.27102 3.49631 3.60310 3.99757 4.12994 4.24647 4.29695 4.32229 4.42096 4.53058 4.69841 4.89869 4.94746 4.99304 5.12080 5.17767 5.29017 5.33728 5.38662 5.41931 5.58084 5.64215 5.79558 6.19481 6.70933 7.00716 7.66626 8.12276 9.09738 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030160 B = 0.006452 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.149927 B = 4338.444332 C = 4578.585217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.244 3.756 3 H 0.106 0.894 4 C 0.251 3.749 5 N -0.525 5.525 6 C -0.009 4.009 7 C -0.084 4.084 8 C -0.108 4.108 9 C -0.088 4.088 10 C -0.106 4.106 11 C -0.039 4.039 12 O -0.220 6.220 13 N -0.593 5.593 14 C 0.180 3.820 15 C -0.281 4.281 16 H 0.084 0.916 17 C -0.047 4.047 18 N -0.934 5.934 19 Si 0.978 3.022 20 H -0.269 1.269 21 H -0.295 1.295 22 H -0.275 1.275 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.146 0.854 27 H 0.179 0.821 28 H 0.182 0.818 29 H 0.145 0.855 30 H 0.001 0.999 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -1.549 -13.575 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.134 3.866 3 H 0.124 0.876 4 C 0.037 3.963 5 N -0.256 5.256 6 C -0.121 4.121 7 C -0.103 4.103 8 C -0.127 4.127 9 C -0.106 4.106 10 C -0.125 4.125 11 C -0.089 4.089 12 O -0.111 6.111 13 N -0.314 5.314 14 C 0.036 3.964 15 C -0.410 4.410 16 H 0.101 0.899 17 C -0.243 4.243 18 N -0.579 5.579 19 Si 0.805 3.195 20 H -0.195 1.195 21 H -0.221 1.221 22 H -0.201 1.201 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.164 0.836 27 H 0.197 0.803 28 H 0.199 0.801 29 H 0.163 0.837 30 H 0.020 0.980 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.528 -1.047 -13.508 14.001 hybrid contribution 0.648 -0.521 1.209 1.467 sum -2.881 -1.568 -12.300 12.729 Atomic orbital electron populations 1.22130 0.92201 1.02588 1.03405 1.19714 0.95463 0.94345 0.77081 0.87598 1.28875 0.93166 0.77357 0.96853 1.70598 1.19318 1.33259 1.02442 1.20546 1.04736 0.88733 0.98038 1.20672 0.98250 1.01353 0.90026 1.21526 0.99250 0.90426 1.01459 1.21515 0.96064 1.00268 0.92767 1.20349 1.02378 0.94386 0.95356 1.21189 1.03298 0.98980 0.85467 1.84591 1.66383 1.27641 1.32528 1.44354 1.57374 1.10484 1.19189 1.20532 0.94733 0.83600 0.97573 1.19678 1.17121 0.92209 1.12006 0.89869 1.25991 0.97974 0.96992 1.03338 1.70275 1.38915 1.09861 1.38808 0.85185 0.78079 0.77292 0.78925 1.19483 1.22084 1.20098 0.89751 0.90565 0.92728 0.83643 0.80346 0.80051 0.83748 0.98027 0.94960 0.95615 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.16 71.99 0.66 -4.21 16 2 C 0.24 10.57 3.26 44.25 0.14 10.71 16 3 H 0.11 4.52 7.86 -2.39 -0.02 4.50 16 4 C 0.25 11.41 6.99 88.39 0.62 12.03 16 5 N -0.53 -23.38 11.34 -296.26 -3.36 -26.74 16 6 C -0.01 -0.36 7.24 39.32 0.28 -0.08 16 7 C -0.08 -2.44 10.10 22.46 0.23 -2.21 16 8 C -0.11 -2.22 10.02 22.25 0.22 -2.00 16 9 C -0.09 -1.84 10.03 22.31 0.22 -1.61 16 10 C -0.11 -3.13 10.06 22.29 0.22 -2.91 16 11 C -0.04 -1.57 7.43 22.88 0.17 -1.40 16 12 O -0.22 -10.15 9.21 -10.07 -0.09 -10.25 16 13 N -0.59 -30.37 2.80 -706.98 -1.98 -32.35 16 14 C 0.18 9.24 7.38 127.77 0.94 10.19 16 15 C -0.28 -15.43 9.58 84.03 0.80 -14.63 16 16 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 17 C -0.05 -2.63 5.09 84.86 0.43 -2.20 16 18 N -0.93 -56.16 10.76 21.65 0.23 -55.93 16 19 Si 0.98 44.88 29.58 68.60 2.03 46.91 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.86 6.67 -2.39 -0.02 1.85 16 26 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 27 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 28 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.00 0.08 7.11 -2.39 -0.02 0.06 16 31 H 0.03 1.44 6.39 -2.39 -0.02 1.43 16 32 H 0.03 1.38 7.37 -2.39 -0.02 1.36 16 33 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -71.63 281.38 2.89 -68.73 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.11 Total: 7.95 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.95 Total: 1.67 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -5.11 Total: -115.02 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.09 Total: -10.25 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -71.63 2.89 -68.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181071702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.869 kcal (2) G-P(sol) polarization free energy of solvation -71.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds