Wall clock time and date at job start Sun Mar 29 2020 22:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 55.00329 * 3 2 1 5 5 C 1.50701 * 109.47011 * 175.00045 * 3 2 1 6 6 H 1.08001 * 119.99788 * 120.00053 * 5 3 2 7 7 C 1.37876 * 120.00018 * 300.00032 * 5 3 2 8 8 N 1.31513 * 120.00106 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99700 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46937 * 60.00438 * 9 7 5 11 11 H 1.48496 * 109.46732 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47514 * 300.00187 * 9 7 5 13 13 N 1.46492 * 109.47290 * 295.00228 * 3 2 1 14 14 C 1.37654 * 120.00213 * 85.00084 * 13 3 2 15 15 N 1.30855 * 124.96350 * 179.97438 * 14 13 3 16 16 C 1.36141 * 108.69819 * 179.97438 * 15 14 13 17 17 C 1.39557 * 133.67296 * 179.97438 * 16 15 14 18 18 C 1.37762 * 119.72999 * 179.97438 * 17 16 15 19 19 C 1.38642 * 120.39674 * 0.07406 * 18 17 16 20 20 C 1.38034 * 120.45683 * 359.93936 * 19 18 17 21 21 C 1.38539 * 119.89787 * 0.02562 * 20 19 18 22 22 O 1.34462 * 124.95934 * 359.69331 * 14 13 3 23 23 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 27 27 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 28 28 H 0.96996 * 119.99992 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00165 * 265.00145 * 13 3 2 30 30 H 1.07995 * 120.13168 * 0.03705 * 17 16 15 31 31 H 1.08008 * 119.80242 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.77458 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.04869 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0051 0.8799 1.3810 10 1 6.5005 2.2799 1.3807 11 1 6.3979 0.2156 2.6496 12 1 6.5967 0.1452 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4092 2.6765 -1.3693 15 7 -0.0362 3.2856 -2.4384 16 6 -1.2993 3.7305 -2.1928 17 6 -2.2390 4.4301 -2.9511 18 6 -3.4646 4.7400 -2.4037 19 6 -3.7684 4.3624 -1.1047 20 6 -2.8478 3.6703 -0.3438 21 6 -1.6109 3.3499 -0.8791 22 8 -0.5269 2.6942 -0.4042 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.8294 -0.0619 2.9494 29 1 2.2719 2.1231 -1.9977 30 1 -2.0067 4.7265 -3.9633 31 1 -4.1929 5.2811 -2.9896 32 1 -4.7322 4.6110 -0.6854 33 1 -3.0916 3.3790 0.6672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184152932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:37 Heat of formation + Delta-G solvation = 36.001885 kcal Electronic energy + Delta-G solvation = -17490.422210 eV Core-core repulsion = 14710.470406 eV Total energy + Delta-G solvation = -2779.951804 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.58578 -37.80343 -36.36446 -34.17073 -32.70349 -31.10643 -30.29084 -28.69306 -26.83730 -23.38717 -22.90825 -21.97740 -21.28697 -20.06583 -17.58132 -17.37128 -16.76634 -16.40057 -15.89962 -15.07317 -14.41735 -14.09941 -13.74617 -13.38973 -13.02640 -12.82950 -12.11677 -11.98879 -11.90718 -11.51665 -11.37065 -11.10591 -11.03128 -10.92220 -10.39513 -10.31740 -9.87899 -9.79486 -9.40536 -9.06090 -8.59319 -8.43765 -7.08236 -6.29335 -4.39772 1.25215 1.57596 2.69443 3.12440 3.19046 3.24166 3.26107 3.86728 4.03688 4.25139 4.89227 5.02870 5.06331 5.32309 5.45392 5.52516 5.70913 6.05380 6.10779 6.14748 6.28788 6.40499 6.54353 6.60686 6.62880 6.76584 6.83354 6.95848 7.03515 7.25447 7.45943 7.52990 7.65524 7.94196 8.23719 8.48151 8.72952 9.27865 10.76276 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.044727 B = 0.005439 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.872928 B = 5146.550644 C = 5384.272757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.272 3.728 4 H 0.046 0.954 5 C -0.538 4.538 6 H 0.066 0.934 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.907 3.093 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.651 5.651 14 C 0.529 3.471 15 N -0.581 5.581 16 C 0.080 3.920 17 C -0.099 4.099 18 C -0.112 4.112 19 C -0.135 4.135 20 C -0.076 4.076 21 C -0.023 4.023 22 O -0.225 6.225 23 H 0.048 0.952 24 H 0.031 0.969 25 H 0.037 0.963 26 H 0.107 0.893 27 H 0.040 0.960 28 H 0.268 0.732 29 H 0.422 0.578 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 4.292 -4.689 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.576 4.576 6 H 0.085 0.915 7 C -0.134 4.134 8 N -0.519 5.519 9 Si 0.734 3.266 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.294 5.294 14 C 0.227 3.773 15 N -0.326 5.326 16 C -0.034 4.034 17 C -0.120 4.120 18 C -0.132 4.132 19 C -0.155 4.155 20 C -0.095 4.095 21 C -0.074 4.074 22 O -0.117 6.117 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.125 0.875 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.262 0.738 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.519 4.135 -4.783 11.427 hybrid contribution 0.900 -0.214 0.564 1.083 sum -8.619 3.921 -4.219 10.366 Atomic orbital electron populations 1.21866 0.98770 0.99379 1.00263 1.22047 0.92260 0.99697 1.03278 1.19073 0.95540 0.89228 0.79137 0.93593 1.21079 0.89844 1.39828 1.06826 0.91547 1.24867 0.99090 0.94352 0.95097 1.69853 1.35586 1.37114 1.09376 0.86410 0.84096 0.78512 0.77597 1.20010 1.21005 1.19951 1.44656 1.07649 1.56912 1.20180 1.21868 0.85783 0.88811 0.80798 1.71157 1.10844 1.26325 1.24243 1.19772 0.91985 0.99035 0.92640 1.20099 0.92091 1.00054 0.99726 1.20859 0.96146 1.00631 0.95530 1.20716 0.99063 1.01073 0.94600 1.19767 0.89101 1.00179 1.00452 1.20057 0.89923 1.02081 0.95354 1.84589 1.22151 1.64172 1.40750 0.93253 0.94951 0.94437 0.87506 0.94093 0.92210 0.73757 0.85533 0.85532 0.85214 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.55 37.16 0.32 -2.67 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.44 2.29 -69.09 -0.16 6.28 16 4 H 0.05 1.22 7.82 -51.93 -0.41 0.81 16 5 C -0.54 -13.53 8.73 -34.44 -0.30 -13.83 16 6 H 0.07 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.33 11.29 55.43 0.63 -22.70 16 9 Si 0.91 19.85 29.54 -169.99 -5.02 14.83 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 N -0.65 -13.75 5.13 -57.05 -0.29 -14.04 16 14 C 0.53 11.22 7.25 -87.64 -0.64 10.58 16 15 N -0.58 -12.04 11.39 -12.13 -0.14 -12.17 16 16 C 0.08 1.50 7.23 -84.69 -0.61 0.88 16 17 C -0.10 -1.48 10.10 -39.26 -0.40 -1.88 16 18 C -0.11 -1.37 10.02 -39.61 -0.40 -1.77 16 19 C -0.14 -1.64 10.03 -39.51 -0.40 -2.04 16 20 C -0.08 -1.13 10.06 -39.55 -0.40 -1.53 16 21 C -0.02 -0.43 7.42 -38.70 -0.29 -0.71 16 22 O -0.22 -4.73 7.96 2.46 0.02 -4.71 16 23 H 0.05 1.03 7.87 -51.93 -0.41 0.62 16 24 H 0.03 0.66 5.62 -51.93 -0.29 0.37 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.11 2.67 5.95 -51.93 -0.31 2.36 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.42 8.22 8.66 -40.82 -0.35 7.87 16 30 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -27.49 279.51 -7.94 -35.43 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.85 Total: 7.33 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -3.50 Total: -8.18 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.20 Total: -48.91 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.02 Total: -4.71 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.49 -7.94 -35.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184152932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.432 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds