Wall clock time and date at job start Sun Mar 29 2020 22:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.37651 * 120.00189 * 274.72291 * 13 3 2 15 15 N 1.30853 * 124.95651 * 359.70604 * 14 13 3 16 16 C 1.36153 * 108.69306 * 179.83711 * 15 14 13 17 17 C 1.39547 * 133.66917 * 180.11290 * 16 15 14 18 18 C 1.37770 * 119.73162 * 180.32426 * 17 16 15 19 19 C 1.38645 * 120.38881 * 0.02562 * 18 17 16 20 20 C 1.38024 * 120.46189 * 359.97438 * 19 18 17 21 21 C 1.38541 * 119.90043 * 0.02562 * 20 19 18 22 22 O 1.34456 * 124.96044 * 180.02562 * 14 13 3 23 23 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 24 24 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 26 26 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 27 27 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 28 28 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 29 29 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 30 30 H 1.08008 * 120.13409 * 0.30839 * 17 16 15 31 31 H 1.08001 * 119.80278 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.76405 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.05170 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4114 2.6814 1.3676 15 7 -0.4932 2.7133 0.4227 16 6 -1.5918 3.3664 0.8921 17 6 -2.8311 3.6891 0.3377 18 6 -3.7556 4.3822 1.0880 19 6 -3.4613 4.7607 2.3889 20 6 -2.2393 4.4478 2.9492 21 6 -1.2980 3.7513 2.2088 22 8 -0.0461 3.3076 2.4660 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8293 -0.0617 -2.9496 29 1 2.2720 2.1230 1.9979 30 1 -3.0644 3.3969 -0.6755 31 1 -4.7149 4.6329 0.6600 32 1 -4.1937 5.3034 2.9682 33 1 -2.0171 4.7456 3.9633 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184152943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:38 Heat of formation + Delta-G solvation = 42.191955 kcal Electronic energy + Delta-G solvation = -17458.046282 eV Core-core repulsion = 14678.362900 eV Total energy + Delta-G solvation = -2779.683383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.58347 -37.74428 -36.54189 -33.86123 -32.69254 -31.02303 -30.27288 -28.66172 -26.79860 -23.43774 -22.61798 -22.09064 -21.31409 -19.66565 -18.29572 -17.14537 -16.41489 -16.30199 -15.96420 -15.02532 -14.35715 -14.00891 -13.71164 -13.32481 -13.12659 -12.76729 -12.18036 -11.98825 -11.77900 -11.34263 -11.12088 -11.03819 -11.01685 -10.79247 -10.41459 -10.29032 -9.71598 -9.62660 -9.22152 -8.96882 -8.53907 -8.42274 -7.01533 -6.22606 -4.32942 1.25596 1.56779 2.56287 3.16257 3.20126 3.27435 3.30010 4.02813 4.07141 4.27599 4.88977 5.05871 5.09672 5.34301 5.43368 5.50396 5.72420 6.06875 6.31871 6.33857 6.39494 6.48710 6.60261 6.62088 6.67001 6.93891 6.97403 7.08150 7.26190 7.43142 7.56694 7.58869 7.78011 8.06572 8.22869 8.57232 8.81026 9.33756 10.82711 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.044036 B = 0.005429 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.684233 B = 5155.981934 C = 5397.090093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.289 3.711 4 H 0.059 0.941 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.905 3.095 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.654 5.654 14 C 0.517 3.483 15 N -0.543 5.543 16 C 0.081 3.919 17 C -0.095 4.095 18 C -0.112 4.112 19 C -0.136 4.136 20 C -0.078 4.078 21 C -0.027 4.027 22 O -0.249 6.249 23 H 0.056 0.944 24 H 0.024 0.976 25 H 0.033 0.967 26 H 0.104 0.896 27 H 0.033 0.967 28 H 0.267 0.733 29 H 0.406 0.594 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.497 5.133 6.986 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C 0.189 3.811 4 H 0.076 0.924 5 C -0.578 4.578 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.733 3.267 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.295 5.295 14 C 0.215 3.785 15 N -0.286 5.286 16 C -0.033 4.033 17 C -0.115 4.115 18 C -0.131 4.131 19 C -0.156 4.156 20 C -0.097 4.097 21 C -0.078 4.078 22 O -0.142 6.142 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.122 0.878 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.241 0.759 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.323 4.687 6.043 12.058 hybrid contribution 1.262 0.206 0.971 1.606 sum -8.061 4.893 7.014 11.752 Atomic orbital electron populations 1.21824 0.98059 0.98225 1.01297 1.22020 0.92922 0.99431 1.02631 1.19063 0.94460 0.89031 0.78532 0.92357 1.21165 0.90097 1.39796 1.06734 0.91798 1.24847 0.98885 0.94520 0.95136 1.69886 1.35319 1.37104 1.09324 0.86381 0.84327 0.78547 0.77489 1.20427 1.20939 1.19794 1.44817 1.07747 1.56816 1.20098 1.22121 0.89788 0.87371 0.79238 1.71402 1.00784 1.29448 1.27013 1.19916 0.94904 0.97169 0.91354 1.20161 0.90600 1.00337 1.00439 1.20873 0.99072 0.98882 0.94307 1.20696 0.95853 1.03079 0.95950 1.19698 0.91486 0.99228 0.99319 1.19962 0.84756 1.05378 0.97686 1.84389 1.27993 1.62493 1.39365 0.92513 0.95687 0.94752 0.87767 0.94821 0.92321 0.75853 0.85316 0.85518 0.85293 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.54 37.16 0.32 -2.64 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.29 7.00 2.28 -69.08 -0.16 6.84 16 4 H 0.06 1.61 7.74 -51.93 -0.40 1.21 16 5 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.73 11.29 55.43 0.63 -23.11 16 9 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.65 -13.78 5.12 -57.04 -0.29 -14.07 16 14 C 0.52 10.86 7.41 -87.65 -0.65 10.21 16 15 N -0.54 -11.78 8.32 -12.13 -0.10 -11.88 16 16 C 0.08 1.54 7.23 -84.69 -0.61 0.93 16 17 C -0.09 -1.47 10.10 -39.26 -0.40 -1.87 16 18 C -0.11 -1.38 10.02 -39.60 -0.40 -1.78 16 19 C -0.14 -1.62 10.03 -39.51 -0.40 -2.01 16 20 C -0.08 -1.10 10.06 -39.55 -0.40 -1.49 16 21 C -0.03 -0.48 7.42 -38.70 -0.29 -0.77 16 22 O -0.25 -4.84 10.79 2.47 0.03 -4.81 16 23 H 0.06 1.29 7.86 -51.93 -0.41 0.88 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.03 0.74 5.62 -51.93 -0.29 0.45 16 26 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 29 H 0.41 7.61 8.66 -40.82 -0.35 7.25 16 30 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -28.03 279.32 -7.91 -35.94 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.84 Total: 6.84 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.52 Total: -8.17 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.23 Total: -49.06 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.03 Total: -4.81 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.03 -7.91 -35.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184152943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.128 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds