Wall clock time and date at job start Sun Mar 29 2020 22:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48506 * 109.46902 * 239.99433 * 3 2 1 5 5 H 1.48493 * 109.47239 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46906 * 120.00384 * 3 2 1 7 7 C 1.37872 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47204 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47338 * 180.02562 * 11 10 9 13 13 O 1.42105 * 109.46788 * 296.38772 * 12 11 10 14 14 C 1.81395 * 103.00021 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47015 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.33573 * 305.69760 * 15 14 12 17 17 C 1.54477 * 110.37303 * 183.44882 * 15 14 12 18 18 C 1.54516 * 104.06474 * 217.18878 * 17 15 14 19 19 C 1.54480 * 104.05793 * 0.02562 * 18 17 15 20 20 O 1.44429 * 110.37395 * 67.94869 * 15 14 12 21 21 H 0.96997 * 120.00239 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46983 * 60.00392 * 9 7 2 23 23 H 1.08997 * 109.47537 * 299.99868 * 9 7 2 24 24 H 1.09004 * 109.46685 * 60.00433 * 10 9 7 25 25 H 1.08997 * 109.46985 * 300.00429 * 10 9 7 26 26 H 1.09000 * 109.47168 * 60.00150 * 11 10 9 27 27 H 1.09007 * 109.47428 * 300.00657 * 11 10 9 28 28 H 1.08998 * 109.47216 * 299.99663 * 14 12 11 29 29 H 1.08993 * 109.47612 * 59.99824 * 14 12 11 30 30 H 1.08999 * 110.51573 * 335.83260 * 17 15 14 31 31 H 1.09005 * 110.51537 * 98.54792 * 17 15 14 32 32 H 1.09001 * 110.50870 * 118.63993 * 18 17 15 33 33 H 1.08994 * 110.51140 * 241.35683 * 18 17 15 34 34 H 1.08997 * 110.37049 * 142.81300 * 19 18 17 35 35 H 1.09002 * 110.36948 * 265.02880 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6622 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.4195 -6.3396 -1.1982 14 6 1.5807 -7.8246 0.0019 15 6 2.4376 -9.0922 0.0018 16 1 3.1438 -9.0720 -0.8282 17 6 1.5411 -10.3472 -0.0854 18 6 2.2487 -11.3779 0.8228 19 6 3.4885 -10.6232 1.3517 20 8 3.1402 -9.2241 1.2567 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8898 23 1 0.6240 -2.5568 0.8902 24 1 2.8718 -3.6044 0.8906 25 1 2.8719 -3.6044 -0.8894 26 1 0.8534 -5.0451 -0.8886 27 1 0.8538 -5.0446 0.8914 28 1 0.9513 -7.8112 0.8916 29 1 0.9519 -7.8116 -0.8883 30 1 0.5415 -10.1296 0.2907 31 1 1.4932 -10.7119 -1.1115 32 1 1.5988 -11.6695 1.6478 33 1 2.5505 -12.2518 0.2456 34 1 3.6855 -10.8967 2.3882 35 1 4.3580 -10.8401 0.7311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191644321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:42 Heat of formation + Delta-G solvation = -105.987091 kcal Electronic energy + Delta-G solvation = -15480.426378 eV Core-core repulsion = 12797.468670 eV Total energy + Delta-G solvation = -2682.957708 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.57858 -35.38071 -34.37937 -32.52533 -31.98502 -31.73963 -27.53420 -26.31935 -23.45148 -22.30215 -21.26719 -20.18306 -17.42417 -16.70192 -16.22831 -15.99772 -15.81439 -14.96382 -14.68444 -14.38033 -14.02751 -13.91598 -13.28194 -12.62961 -12.35218 -12.20907 -11.99198 -11.90340 -11.71632 -11.46539 -11.27178 -10.92950 -10.81819 -10.72163 -10.65209 -10.04248 -10.01693 -9.74171 -9.22088 -9.00379 -8.32932 -7.86265 -5.98110 -4.00655 1.73258 2.93408 3.35997 3.39673 3.42994 3.59450 4.04380 4.30063 4.48177 4.50133 4.64833 4.82924 4.93503 5.08219 5.22463 5.37433 5.39257 5.50560 5.51888 5.55775 5.60222 5.67761 5.71474 5.87581 6.25935 6.55665 6.56982 6.75552 7.09012 7.68550 7.81756 8.01563 8.43681 9.06197 9.63381 11.13203 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.067472 B = 0.003639 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.885024 B = 7691.782791 C = 7829.624405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.435 4.435 12 S 1.240 4.760 13 O -0.854 6.854 14 C -0.452 4.452 15 C 0.097 3.903 16 H 0.074 0.926 17 C -0.148 4.148 18 C -0.156 4.156 19 C 0.043 3.957 20 O -0.366 6.366 21 H 0.261 0.739 22 H 0.014 0.986 23 H 0.019 0.981 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -22.547 4.753 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.574 4.574 12 S 1.440 4.560 13 O -0.849 6.849 14 C -0.587 4.587 15 C 0.038 3.962 16 H 0.091 0.909 17 C -0.187 4.187 18 C -0.194 4.194 19 C -0.034 4.034 20 O -0.285 6.285 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.131 0.869 28 H 0.142 0.858 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.095 -22.255 4.876 23.148 hybrid contribution -1.219 0.690 -2.027 2.464 sum 2.876 -21.565 2.849 21.942 Atomic orbital electron populations 1.69956 1.06090 1.26718 1.50903 1.25029 0.94865 0.99296 0.95292 0.86634 0.79567 0.82982 0.78701 1.20250 1.21312 1.20093 1.21256 0.93152 0.91068 1.50614 0.92557 1.19097 0.93823 0.90933 0.97302 1.21305 0.98935 0.91858 1.01111 1.27684 1.11649 1.11091 1.06948 1.70870 0.87766 0.85401 1.11934 1.93070 1.56309 1.84121 1.51394 1.27732 1.10976 1.12052 1.07926 1.22464 0.92652 0.93463 0.87576 0.90861 1.23007 1.00250 0.94826 1.00589 1.22948 0.97770 0.98752 0.99913 1.23418 0.96471 0.81350 1.02118 1.89157 1.75602 1.25358 1.38386 0.92959 0.96807 0.96241 0.92059 0.92872 0.90297 0.86909 0.85756 0.88564 0.90234 0.90652 0.90507 0.90641 0.88740 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.09 -1.98 5.16 -26.73 -0.14 -2.12 16 11 C -0.44 -7.23 5.92 37.15 0.22 -7.01 16 12 S 1.24 17.45 13.04 -107.50 -1.40 16.05 16 13 O -0.85 -17.20 18.14 -35.23 -0.64 -17.84 16 14 C -0.45 -5.03 5.54 37.16 0.21 -4.83 16 15 C 0.10 1.06 3.25 -25.96 -0.08 0.97 16 16 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.15 -1.24 6.63 -25.16 -0.17 -1.41 16 18 C -0.16 -1.07 7.09 -25.16 -0.18 -1.25 16 19 C 0.04 0.34 7.63 37.93 0.29 0.63 16 20 O -0.37 -3.98 11.22 -35.23 -0.40 -4.37 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.39 8.14 -51.92 -0.42 0.96 16 27 H 0.11 1.59 8.14 -51.92 -0.42 1.17 16 28 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -35.88 305.24 -8.39 -44.27 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -5.87 Total: -4.67 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -0.40 Total: -28.39 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.74 Total: -26.66 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.03 Total: -22.21 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 17.45 SS G_CDS: -1.40 Total: 16.05 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.88 -8.39 -44.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191644321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.714 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds