Wall clock time and date at job start Sun Mar 29 2020 22:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00239 * 2 1 4 4 H 1.48499 * 109.47047 * 270.00088 * 3 2 1 5 5 H 1.48497 * 109.46895 * 29.99942 * 3 2 1 6 6 H 1.48493 * 109.47104 * 149.99931 * 3 2 1 7 7 C 1.37881 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00246 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99979 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47363 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47296 * 179.97438 * 10 9 7 12 12 S 1.81403 * 109.47090 * 180.02562 * 11 10 9 13 13 O 1.42100 * 109.46940 * 63.60790 * 12 11 10 14 14 C 1.81394 * 103.00103 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47382 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.86902 * 306.01314 * 15 14 12 17 17 C 1.54096 * 109.87921 * 184.99908 * 15 14 12 18 18 C 1.54817 * 104.18822 * 238.39849 * 17 15 14 19 19 C 1.54991 * 102.09285 * 339.11830 * 18 17 15 20 20 O 1.43749 * 109.99810 * 67.09345 * 15 14 12 21 21 H 0.96997 * 119.99715 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47316 * 59.99730 * 9 7 2 23 23 H 1.08998 * 109.47078 * 299.99700 * 9 7 2 24 24 H 1.09005 * 109.46881 * 59.99762 * 10 9 7 25 25 H 1.09003 * 109.47049 * 300.00526 * 10 9 7 26 26 H 1.08999 * 109.46941 * 60.00303 * 11 10 9 27 27 H 1.09005 * 109.46813 * 300.00200 * 11 10 9 28 28 H 1.09004 * 109.46795 * 59.99557 * 14 12 11 29 29 H 1.09003 * 109.47142 * 300.00196 * 14 12 11 30 30 H 1.09004 * 110.48850 * 119.72115 * 17 15 14 31 31 H 1.09002 * 110.60601 * 357.13078 * 17 15 14 32 32 H 1.08996 * 110.90849 * 97.31959 * 18 17 15 33 33 H 1.09004 * 110.90250 * 220.92384 * 18 17 15 34 34 H 1.09000 * 110.62043 * 155.51925 * 19 18 17 35 35 H 1.08998 * 110.62229 * 278.52472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6367 0.0022 12 16 6.1562 -4.3470 0.0028 13 8 5.7525 -4.9924 -1.1970 14 6 7.9586 -4.1426 0.0019 15 6 8.6279 -5.5184 0.0030 16 1 8.2483 -6.1144 0.8329 17 6 10.1553 -5.3579 0.1285 18 6 10.7151 -6.0526 -1.1368 19 6 9.5413 -6.9788 -1.5449 20 8 8.3696 -6.1917 -1.2406 21 1 -0.4849 0.8400 -0.0004 22 1 3.8746 -0.6801 0.8911 23 1 3.8752 -0.6806 -0.8889 24 1 3.6585 -3.1511 -0.8875 25 1 3.6578 -3.1499 0.8924 26 1 5.9149 -2.1221 0.8918 27 1 5.9148 -2.1235 -0.8882 28 1 8.2620 -3.5905 0.8915 29 1 8.2613 -3.5915 -0.8885 30 1 10.5184 -5.8542 1.0285 31 1 10.4307 -4.3033 0.1381 32 1 10.9259 -5.3239 -1.9195 33 1 11.6054 -6.6348 -0.8991 34 1 9.5845 -7.2066 -2.6099 35 1 9.5521 -7.8950 -0.9546 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191644352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:45 Heat of formation + Delta-G solvation = -100.038289 kcal Electronic energy + Delta-G solvation = -15602.704895 eV Core-core repulsion = 12920.005146 eV Total energy + Delta-G solvation = -2682.699749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.58893 -35.28916 -34.50134 -32.55349 -32.04268 -31.69049 -28.06607 -26.30250 -23.27677 -22.37298 -21.21624 -20.11772 -17.37517 -16.78532 -16.56719 -16.09343 -15.72356 -14.91935 -14.77955 -14.23615 -13.89372 -13.84153 -13.28491 -12.79099 -12.69525 -12.15997 -12.13039 -11.97067 -11.79172 -11.49977 -11.34318 -11.07438 -10.98552 -10.78754 -10.36383 -9.91267 -9.88823 -9.73366 -9.27674 -9.13712 -8.52070 -7.93142 -6.02223 -4.00134 1.74447 2.90949 3.31605 3.38467 3.41644 3.62464 4.08480 4.26800 4.46545 4.47208 4.63630 4.76512 4.96287 5.08797 5.23790 5.31183 5.38269 5.44144 5.47417 5.51199 5.55623 5.57318 5.70924 5.88074 6.13345 6.43205 6.56314 6.70480 6.89068 7.29233 7.42719 7.80811 8.56278 9.03294 9.60131 11.11364 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058134 B = 0.003973 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.526781 B = 7046.536264 C = 7319.226617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.085 4.085 11 C -0.443 4.443 12 S 1.237 4.763 13 O -0.830 6.830 14 C -0.461 4.461 15 C 0.096 3.904 16 H 0.078 0.922 17 C -0.148 4.148 18 C -0.157 4.157 19 C 0.043 3.957 20 O -0.361 6.361 21 H 0.263 0.737 22 H 0.018 0.982 23 H 0.009 0.991 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.999 -11.357 4.621 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.581 4.581 12 S 1.435 4.565 13 O -0.825 6.825 14 C -0.596 4.596 15 C 0.037 3.963 16 H 0.096 0.904 17 C -0.187 4.187 18 C -0.195 4.195 19 C -0.034 4.034 20 O -0.280 6.280 21 H 0.073 0.927 22 H 0.036 0.964 23 H 0.027 0.973 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.143 0.857 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.145 -12.075 4.472 25.616 hybrid contribution 1.364 2.277 -1.752 3.180 sum 23.509 -9.798 2.720 25.614 Atomic orbital electron populations 1.69918 1.06279 1.26844 1.51230 1.25039 0.94739 0.99155 0.94617 0.86767 0.80325 0.83655 0.78459 1.20426 1.21336 1.19030 1.21185 0.89522 0.94591 1.50687 0.90871 1.19574 0.97038 0.91863 0.96259 1.21111 0.88401 1.00976 1.01884 1.27766 1.05890 1.17707 1.06727 1.70434 0.84633 0.88376 1.13010 1.93161 1.74810 1.63987 1.50568 1.27972 1.23108 1.00943 1.07567 1.22269 0.94414 0.91579 0.88055 0.90374 1.23032 0.94826 1.02258 0.98589 1.23151 0.98876 0.99393 0.98064 1.23563 0.84195 0.94106 1.01497 1.89128 1.37431 1.62237 1.39213 0.92749 0.96357 0.97290 0.92279 0.91548 0.87149 0.90339 0.85728 0.89226 0.90341 0.90235 0.90687 0.90242 0.89104 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.33 16 10 C -0.08 -1.72 5.16 -26.73 -0.14 -1.86 16 11 C -0.44 -6.85 5.92 37.16 0.22 -6.63 16 12 S 1.24 16.25 13.11 -107.50 -1.41 14.84 16 13 O -0.83 -16.81 17.47 -39.55 -0.69 -17.50 16 14 C -0.46 -4.78 5.40 37.16 0.20 -4.58 16 15 C 0.10 0.97 3.40 -26.16 -0.09 0.89 16 16 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 17 C -0.15 -1.13 6.64 -25.20 -0.17 -1.29 16 18 C -0.16 -1.20 7.15 -24.72 -0.18 -1.38 16 19 C 0.04 0.41 7.72 38.21 0.29 0.71 16 20 O -0.36 -5.01 10.44 -39.55 -0.41 -5.42 16 21 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 23 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.11 1.37 8.14 -51.92 -0.42 0.95 16 27 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.12 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -38.31 300.24 -8.11 -46.42 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -5.83 Total: -4.42 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -0.40 Total: -28.25 kcal Atomic # 7 Polarization: -28.40 SS G_CDS: 0.77 Total: -27.63 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.10 Total: -22.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Atomic # 16 Polarization: 16.25 SS G_CDS: -1.41 Total: 14.84 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -38.31 -8.11 -46.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191644352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.617 kcal (2) G-P(sol) polarization free energy of solvation -38.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds