Wall clock time and date at job start Sun Mar 29 2020 22:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.08992 * 109.25322 * 60.52402 * 12 10 9 14 14 C 1.52725 * 109.25735 * 180.02562 * 12 10 9 15 15 C 1.53326 * 108.42146 * 171.57490 * 14 12 10 16 16 C 1.52760 * 108.36095 * 290.10568 * 15 14 12 17 17 C 1.50500 * 110.55991 * 50.78082 * 16 15 14 18 18 C 1.39191 * 117.97110 * 162.71554 * 17 16 15 19 19 C 1.38401 * 118.87091 * 179.76578 * 18 17 16 20 20 C 1.38247 * 118.84096 * 359.97438 * 19 18 17 21 21 N 1.31505 * 120.60925 * 0.11883 * 20 19 18 22 22 C 1.32703 * 122.40266 * 359.97438 * 21 20 19 23 23 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.67433 * 291.31004 * 14 12 10 26 26 H 1.08997 * 109.67786 * 51.80612 * 14 12 10 27 27 H 1.09001 * 109.68712 * 49.82387 * 15 14 12 28 28 H 1.09001 * 109.68665 * 170.39040 * 15 14 12 29 29 H 1.08999 * 109.26602 * 171.06013 * 16 15 14 30 30 H 1.09001 * 109.25907 * 290.54685 * 16 15 14 31 31 H 1.08009 * 120.56588 * 359.74780 * 18 17 16 32 32 H 1.08001 * 120.58287 * 179.97438 * 19 18 17 33 33 H 1.08001 * 119.69381 * 180.14261 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.6253 -4.9213 -0.8933 14 6 2.2406 -6.0201 0.0027 15 6 1.4666 -7.3263 0.2164 16 6 0.9482 -7.3488 1.6532 17 6 0.2231 -6.0695 1.9736 18 6 -0.6179 -6.0559 3.0826 19 6 -1.2901 -4.8878 3.3972 20 6 -1.1024 -3.7747 2.5991 21 7 -0.3011 -3.8250 1.5576 22 6 0.3598 -4.9255 1.2213 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3906 0.0024 25 1 2.7627 -6.0551 -0.9535 26 1 2.9610 -5.8836 0.8092 27 1 0.6274 -7.3736 -0.4776 28 1 2.1285 -8.1765 0.0515 29 1 0.2654 -8.1895 1.7760 30 1 1.7890 -7.4657 2.3370 31 1 -0.7439 -6.9420 3.6873 32 1 -1.9498 -4.8464 4.2513 33 1 -1.6184 -2.8553 2.8333 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192475112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:04 Heat of formation + Delta-G solvation = -14.017074 kcal Electronic energy + Delta-G solvation = -17794.343027 eV Core-core repulsion = 15012.222238 eV Total energy + Delta-G solvation = -2782.120789 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49014 -37.94777 -36.01358 -33.72515 -32.98127 -30.99442 -30.11030 -29.52550 -25.24874 -23.93350 -22.91339 -22.44297 -19.82841 -18.88375 -17.63493 -16.45195 -16.13752 -15.79766 -15.23105 -14.44073 -14.09233 -14.01912 -13.68998 -13.37850 -13.05380 -12.64302 -12.59540 -12.16695 -11.91402 -11.52595 -11.43756 -10.98894 -10.81529 -10.60128 -10.31924 -10.27506 -10.05892 -9.41874 -9.36413 -8.92420 -8.63303 -8.06003 -7.75704 -6.26935 -3.65345 1.40509 1.56541 3.24434 3.32368 3.38892 3.93966 4.14467 4.28615 4.59946 4.84474 4.89667 5.02081 5.10112 5.19129 5.36220 5.39736 5.46502 5.49851 5.74317 5.86004 5.87328 5.95128 6.01244 6.10525 6.14426 6.36555 6.46310 6.55681 6.70634 6.75790 7.01817 7.66976 8.22484 8.43436 8.82217 9.31991 9.79916 10.31342 10.89804 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.007574 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.832037 B = 3695.775774 C = 4492.280974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.024 3.976 3 Si 0.926 3.074 4 H -0.279 1.279 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.299 4.299 8 H 0.099 0.901 9 N -0.537 5.537 10 C 0.444 3.556 11 O -0.605 6.605 12 C -0.052 4.052 13 H 0.097 0.903 14 C -0.093 4.093 15 C -0.122 4.122 16 C -0.073 4.073 17 C -0.131 4.131 18 C -0.083 4.083 19 C -0.184 4.184 20 C 0.111 3.889 21 N -0.463 5.463 22 C 0.148 3.852 23 H 0.269 0.731 24 H 0.406 0.594 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 -12.977 4.491 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.178 4.178 3 Si 0.753 3.247 4 H -0.206 1.206 5 H -0.195 1.195 6 H -0.210 1.210 7 C -0.429 4.429 8 H 0.117 0.883 9 N -0.173 5.173 10 C 0.228 3.772 11 O -0.492 6.492 12 C -0.074 4.074 13 H 0.115 0.885 14 C -0.132 4.132 15 C -0.159 4.159 16 C -0.111 4.111 17 C -0.133 4.133 18 C -0.109 4.109 19 C -0.204 4.204 20 C -0.049 4.049 21 N -0.171 5.171 22 C 0.012 3.988 23 H 0.079 0.921 24 H 0.243 0.757 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.766 -12.031 3.962 13.214 hybrid contribution -0.477 0.257 0.750 0.925 sum -4.242 -11.773 4.712 13.372 Atomic orbital electron populations 1.69675 1.05809 1.27692 1.50030 1.25252 0.95575 0.99483 0.97484 0.85931 0.79303 0.81170 0.78272 1.20566 1.19487 1.20977 1.19744 0.93272 0.82679 1.47249 0.88291 1.41997 1.10330 1.03832 1.61137 1.19387 0.87687 0.84586 0.85502 1.90487 1.13800 1.87111 1.57838 1.20120 0.95711 0.96738 0.94847 0.88509 1.21303 0.96843 0.91317 1.03700 1.21626 1.00111 0.98317 0.95863 1.20394 0.99219 0.93651 0.97837 1.20403 0.99528 0.96730 0.96644 1.21473 0.95275 0.98263 0.95876 1.22069 1.02148 0.94495 1.01706 1.22733 0.93993 0.97982 0.90160 1.67563 1.05829 1.26840 1.16869 1.20917 0.94146 0.88160 0.95534 0.92134 0.75696 0.90627 0.90648 0.91683 0.91182 0.91010 0.90583 0.85402 0.85215 0.82744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 13.05 55.50 0.72 -24.50 16 2 C 0.02 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.30 -8.84 9.68 -14.93 -0.14 -8.98 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.54 -14.81 4.69 -10.96 -0.05 -14.87 16 10 C 0.44 11.41 7.01 -10.98 -0.08 11.33 16 11 O -0.61 -17.37 15.41 5.55 0.09 -17.29 16 12 C -0.05 -1.02 2.71 -93.05 -0.25 -1.28 16 13 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 14 C -0.09 -1.55 4.64 -26.70 -0.12 -1.67 16 15 C -0.12 -1.49 5.98 -26.69 -0.16 -1.65 16 16 C -0.07 -0.88 5.69 -28.10 -0.16 -1.04 16 17 C -0.13 -1.99 5.74 -104.60 -0.60 -2.59 16 18 C -0.08 -1.09 9.75 -39.17 -0.38 -1.47 16 19 C -0.18 -2.49 10.12 -39.52 -0.40 -2.89 16 20 C 0.11 1.88 11.19 -17.69 -0.20 1.68 16 21 N -0.46 -9.45 7.54 -9.51 -0.07 -9.52 16 22 C 0.15 2.79 6.19 -82.44 -0.51 2.28 16 23 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.41 11.00 6.22 -40.82 -0.25 10.75 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.07 1.37 7.79 -51.93 -0.40 0.97 16 27 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 278.21 15.07 4.19 4.19 Total: -1.00 -33.46 278.21 -7.22 -40.68 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -3.97 Total: 10.21 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.10 Total: -5.69 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.60 Total: -48.89 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.09 Total: -17.29 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.46 -7.22 -40.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192475112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.659 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds