Wall clock time and date at job start Sun Mar 29 2020 22:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.08992 * 109.25322 * 60.52402 * 12 10 9 14 14 C 1.52725 * 109.25735 * 180.02562 * 12 10 9 15 15 C 1.53326 * 108.42146 * 171.57490 * 14 12 10 16 16 C 1.52760 * 108.36095 * 290.10568 * 15 14 12 17 17 C 1.50500 * 110.55991 * 50.78082 * 16 15 14 18 18 C 1.39191 * 117.97110 * 162.71554 * 17 16 15 19 19 C 1.38401 * 118.87091 * 179.76578 * 18 17 16 20 20 C 1.38247 * 118.84096 * 359.97438 * 19 18 17 21 21 N 1.31505 * 120.60925 * 0.11883 * 20 19 18 22 22 C 1.32703 * 122.40266 * 359.97438 * 21 20 19 23 23 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.67433 * 291.31004 * 14 12 10 26 26 H 1.08997 * 109.67786 * 51.80612 * 14 12 10 27 27 H 1.09001 * 109.68712 * 49.82387 * 15 14 12 28 28 H 1.09001 * 109.68665 * 170.39040 * 15 14 12 29 29 H 1.08999 * 109.26602 * 171.06013 * 16 15 14 30 30 H 1.09001 * 109.25907 * 290.54685 * 16 15 14 31 31 H 1.08009 * 120.56588 * 359.74780 * 18 17 16 32 32 H 1.08001 * 120.58287 * 179.97438 * 19 18 17 33 33 H 1.08001 * 119.69381 * 180.14261 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.6253 -4.9213 -0.8933 14 6 2.2406 -6.0201 0.0027 15 6 1.4666 -7.3263 0.2164 16 6 0.9482 -7.3488 1.6532 17 6 0.2231 -6.0695 1.9736 18 6 -0.6179 -6.0559 3.0826 19 6 -1.2901 -4.8878 3.3972 20 6 -1.1024 -3.7747 2.5991 21 7 -0.3011 -3.8250 1.5576 22 6 0.3598 -4.9255 1.2213 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3906 0.0024 25 1 2.7627 -6.0551 -0.9535 26 1 2.9610 -5.8836 0.8092 27 1 0.6274 -7.3736 -0.4776 28 1 2.1285 -8.1765 0.0515 29 1 0.2654 -8.1895 1.7760 30 1 1.7890 -7.4657 2.3370 31 1 -0.7439 -6.9420 3.6873 32 1 -1.9498 -4.8464 4.2513 33 1 -1.6184 -2.8553 2.8333 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192475112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:03 Heat of formation + Delta-G solvation = -36.485095 kcal Electronic energy + Delta-G solvation = -17795.317313 eV Core-core repulsion = 15012.222238 eV Total energy + Delta-G solvation = -2783.095075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.79514 -39.82043 -37.31270 -35.85692 -34.31865 -33.06588 -31.32351 -30.82330 -27.19277 -25.31012 -24.11049 -23.81261 -21.28204 -20.50079 -19.76807 -17.96489 -17.44460 -17.37500 -16.65901 -16.28801 -15.80886 -15.39706 -15.05212 -14.69612 -14.46570 -14.34273 -13.74630 -13.61060 -13.48764 -13.19784 -12.94324 -12.76318 -12.40920 -12.15734 -11.95615 -11.77061 -11.48532 -11.42926 -10.63360 -10.39800 -10.12340 -9.92906 -9.59436 -8.43321 -5.91855 0.20048 0.44037 1.35375 1.37591 1.52007 2.03262 2.29670 2.84813 3.18109 3.30376 3.43771 3.68715 3.90274 3.96534 4.11517 4.18807 4.25894 4.40191 4.49081 4.63719 4.67383 4.78549 4.91946 4.95861 5.04628 5.16854 5.25417 5.32430 5.39564 5.44032 5.47748 5.86967 6.02269 6.65835 7.12266 7.20311 7.66675 8.20810 8.73397 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.007574 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.832037 B = 3695.775774 C = 4492.280974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.342 4.342 8 H 0.074 0.926 9 N -0.547 5.547 10 C 0.435 3.565 11 O -0.645 6.645 12 C -0.044 4.044 13 H 0.102 0.898 14 C -0.090 4.090 15 C -0.111 4.111 16 C -0.073 4.073 17 C -0.126 4.126 18 C -0.077 4.077 19 C -0.165 4.165 20 C 0.080 3.920 21 N -0.515 5.515 22 C 0.109 3.891 23 H 0.277 0.723 24 H 0.405 0.595 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 -14.973 5.933 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.092 0.908 9 N -0.183 5.183 10 C 0.222 3.778 11 O -0.535 6.535 12 C -0.066 4.066 13 H 0.119 0.881 14 C -0.128 4.128 15 C -0.149 4.149 16 C -0.110 4.110 17 C -0.128 4.128 18 C -0.103 4.103 19 C -0.184 4.184 20 C -0.080 4.080 21 N -0.224 5.224 22 C -0.027 4.027 23 H 0.086 0.914 24 H 0.243 0.757 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.193 0.807 32 H 0.187 0.813 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.895 -14.043 5.404 15.823 hybrid contribution -0.178 0.857 0.349 0.942 sum -5.072 -13.186 5.753 15.254 Atomic orbital electron populations 1.69755 1.06886 1.29055 1.49342 1.26120 0.96578 1.02424 0.96079 0.84923 0.77932 0.76713 0.78643 1.19682 1.19707 1.19067 1.19757 0.92582 0.84559 1.50323 0.90757 1.42108 1.10231 1.04135 1.61783 1.20531 0.87670 0.86266 0.83308 1.90433 1.15762 1.88178 1.59105 1.20073 0.96161 0.93994 0.96413 0.88063 1.21304 0.96184 0.92794 1.02560 1.21609 1.00322 0.96225 0.96706 1.20541 1.00034 0.93025 0.97408 1.20793 0.99228 0.96606 0.96155 1.22013 0.93556 0.99589 0.95141 1.22449 1.01374 0.93217 1.01392 1.22951 0.94594 0.99713 0.90724 1.67351 1.07486 1.28620 1.18935 1.20829 0.95655 0.89708 0.96459 0.91382 0.75708 0.91206 0.92927 0.90789 0.88128 0.87070 0.89609 0.80677 0.81281 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.63 13.05 21.66 0.28 -52.35 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 45.49 29.55 68.60 2.03 47.52 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.34 -21.31 9.68 84.04 0.81 -20.49 16 8 H 0.07 4.88 7.16 -2.92 -0.02 4.86 16 9 N -0.55 -31.98 4.69 -306.98 -1.44 -33.41 16 10 C 0.44 23.74 7.01 87.66 0.61 24.36 16 11 O -0.64 -39.34 15.41 -3.05 -0.05 -39.39 16 12 C -0.04 -1.82 2.71 -12.37 -0.03 -1.85 16 13 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 14 C -0.09 -2.99 4.64 30.61 0.14 -2.85 16 15 C -0.11 -2.39 5.98 30.62 0.18 -2.21 16 16 C -0.07 -1.43 5.69 29.71 0.17 -1.26 16 17 C -0.13 -3.50 5.74 -19.85 -0.11 -3.61 16 18 C -0.08 -1.71 9.75 22.54 0.22 -1.49 16 19 C -0.16 -3.98 10.12 22.31 0.23 -3.75 16 20 C 0.08 2.70 11.19 84.74 0.95 3.65 16 21 N -0.51 -21.72 7.54 -184.00 -1.39 -23.10 16 22 C 0.11 4.12 6.19 42.28 0.26 4.38 16 23 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 24 H 0.41 23.34 6.22 -92.71 -0.58 22.76 16 25 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.05 1.96 7.79 -2.39 -0.02 1.94 16 27 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.11 1.41 8.13 -2.39 -0.02 1.39 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.15 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -78.13 278.21 3.88 -74.25 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.55 Total: 31.83 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 3.90 Total: -5.33 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -2.54 Total: -108.87 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.05 Total: -39.39 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -78.13 3.88 -74.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192475112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.762 kcal (2) G-P(sol) polarization free energy of solvation -78.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds