Wall clock time and date at job start Sun Mar 29 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00155 * 2 1 4 4 C 1.50699 * 119.99848 * 180.02562 * 2 1 3 5 5 O 1.45200 * 109.46986 * 359.97438 * 4 2 1 6 6 C 1.34713 * 117.00009 * 180.02562 * 5 4 2 7 7 O 1.21468 * 120.00055 * 0.02562 * 6 5 4 8 8 C 1.47764 * 119.99945 * 179.97438 * 6 5 4 9 9 C 1.39974 * 120.03385 * 0.02681 * 8 6 5 10 10 C 1.38308 * 120.35505 * 179.97438 * 9 8 6 11 11 C 1.37765 * 120.41921 * 359.97438 * 10 9 8 12 12 C 1.40756 * 120.05164 * 359.97438 * 11 10 9 13 13 C 1.41437 * 120.17935 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00162 * 150.17516 * 13 12 11 15 15 C 1.39939 * 119.99658 * 330.18336 * 13 12 11 16 16 N 1.30828 * 119.99689 * 161.73338 * 15 13 12 17 17 Si 1.86794 * 120.00027 * 341.72052 * 15 13 12 18 18 H 1.48505 * 109.47034 * 95.41935 * 17 15 13 19 19 H 1.48490 * 109.47544 * 215.41744 * 17 15 13 20 20 H 1.48499 * 109.47417 * 335.42043 * 17 15 13 21 21 C 1.39050 * 120.02948 * 179.97438 * 8 6 5 22 22 H 1.07998 * 119.99860 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.00264 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47400 * 270.00103 * 3 2 1 25 25 H 1.09000 * 109.47289 * 30.00289 * 3 2 1 26 26 H 1.09007 * 109.46990 * 150.00119 * 3 2 1 27 27 H 1.09007 * 109.47214 * 240.00004 * 4 2 1 28 28 H 1.09000 * 109.47326 * 119.99778 * 4 2 1 29 29 H 1.07996 * 119.81642 * 359.97438 * 9 8 6 30 30 H 1.07998 * 119.79256 * 179.97438 * 10 9 8 31 31 H 1.07997 * 119.97539 * 180.02562 * 11 10 9 32 32 H 0.97006 * 119.99467 * 180.02562 * 16 15 13 33 33 H 1.08005 * 120.20455 * 0.30596 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 8 1.1198 -2.4087 -0.0005 6 6 1.6347 -3.6536 -0.0004 7 8 2.8389 -3.8128 0.0000 8 6 0.7345 -4.8254 0.0003 9 6 -0.6533 -4.6427 0.0003 10 6 -1.5020 -5.7347 0.0004 11 6 -0.9920 -7.0145 0.0000 12 6 0.4007 -7.2183 -0.0011 13 6 0.9272 -8.5310 -0.0021 14 1 1.8810 -8.7300 -0.4681 15 6 0.2122 -9.5721 0.6005 16 7 0.4937 -10.8153 0.3058 17 14 -1.1439 -9.1867 1.8259 18 1 -2.4544 -9.1776 1.1274 19 1 -1.1578 -10.2217 2.8906 20 1 -0.8978 -7.8544 2.4339 21 6 1.2652 -6.1106 -0.0002 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 2.2452 1.6198 -1.0276 25 1 1.4745 2.0647 0.5139 26 1 3.0160 1.1747 0.5138 27 1 2.6901 -1.3633 0.8894 28 1 2.6901 -1.3625 -0.8906 29 1 -1.0634 -3.6436 0.0002 30 1 -2.5713 -5.5833 0.0009 31 1 -1.6613 -7.8621 -0.0003 32 1 -0.0023 -11.5369 0.7233 33 1 2.3354 -6.2565 0.0039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194063438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:46 Heat of formation + Delta-G solvation = -58.653141 kcal Electronic energy + Delta-G solvation = -16781.395575 eV Core-core repulsion = 13965.046470 eV Total energy + Delta-G solvation = -2816.349105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.04736 -37.79429 -36.59233 -34.81938 -33.72763 -30.83999 -30.15792 -27.56038 -26.97014 -25.26420 -23.40417 -20.78759 -20.38305 -18.70083 -17.97469 -16.69912 -16.24999 -16.14265 -15.54087 -14.72234 -14.50777 -13.93207 -13.90943 -13.61304 -13.01752 -12.86263 -12.78393 -12.42613 -12.07521 -11.67565 -11.62579 -11.25393 -11.10228 -10.85189 -10.65172 -10.59673 -10.13764 -9.90327 -9.71319 -9.27999 -9.11518 -7.99865 -7.82624 -7.04223 -4.59850 1.65813 2.11271 2.46894 2.97420 3.02548 3.14695 3.20625 3.34151 3.89628 4.40493 4.63949 4.91346 5.23104 5.25679 5.27334 5.31352 5.49495 5.50813 5.73220 5.85822 5.88369 6.10857 6.28062 6.50873 6.57431 6.59676 6.64540 6.84088 6.91732 7.14131 7.35745 7.44558 7.67916 7.84479 8.22815 8.28047 8.46067 8.66063 9.97916 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.046468 B = 0.004915 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.416822 B = 5695.695848 C = 6089.181007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.147 4.147 3 C -0.111 4.111 4 C 0.102 3.898 5 O -0.351 6.351 6 C 0.513 3.487 7 O -0.519 6.519 8 C -0.096 4.096 9 C -0.192 4.192 10 C -0.089 4.089 11 C -0.212 4.212 12 C 0.079 3.921 13 C -0.444 4.444 14 H 0.094 0.906 15 C 0.084 3.916 16 N -0.803 5.803 17 Si 0.909 3.091 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.243 1.243 21 C -0.134 4.134 22 H 0.097 0.903 23 H 0.113 0.887 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.287 0.713 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 15.307 0.868 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.168 4.168 4 C 0.028 3.972 5 O -0.269 6.269 6 C 0.360 3.640 7 O -0.409 6.409 8 C -0.097 4.097 9 C -0.211 4.211 10 C -0.107 4.107 11 C -0.232 4.232 12 C 0.076 3.924 13 C -0.472 4.472 14 H 0.112 0.888 15 C -0.136 4.136 16 N -0.426 5.426 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.215 1.215 20 H -0.167 1.167 21 C -0.153 4.153 22 H 0.116 0.884 23 H 0.131 0.869 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.599 14.987 0.875 15.098 hybrid contribution -0.455 -0.016 0.480 0.661 sum -2.054 14.972 1.355 15.173 Atomic orbital electron populations 1.23804 0.95359 1.02538 0.99003 1.21577 0.96022 0.93924 1.03187 1.20738 1.00174 0.93584 1.02331 1.21655 0.90386 0.82534 1.02618 1.86543 1.40438 1.15113 1.84789 1.21803 0.87607 0.82771 0.71778 1.90764 1.16598 1.86605 1.46932 1.18761 0.92547 0.89575 1.08836 1.20600 0.91567 0.97849 1.11123 1.20586 0.97936 0.92716 0.99464 1.21273 0.95425 0.95944 1.10537 1.17640 0.91039 0.93174 0.90509 1.19492 1.06566 0.89747 1.31359 0.88776 1.26158 0.96855 0.94242 0.96325 1.69689 1.37215 1.00411 1.35301 0.86333 0.80213 0.79948 0.79987 1.19431 1.21522 1.16656 1.21285 0.99363 0.89820 1.04853 0.88426 0.86893 0.91288 0.91348 0.91729 0.90471 0.90462 0.87301 0.87904 0.87643 0.90249 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 13.67 29.01 0.40 -1.54 16 2 C -0.15 -1.68 6.05 -101.07 -0.61 -2.29 16 3 C -0.11 -0.93 10.03 36.01 0.36 -0.56 16 4 C 0.10 1.42 5.87 36.01 0.21 1.63 16 5 O -0.35 -6.05 7.84 -40.53 -0.32 -6.37 16 6 C 0.51 10.43 7.90 34.62 0.27 10.70 16 7 O -0.52 -11.40 16.12 -19.24 -0.31 -11.71 16 8 C -0.10 -2.10 5.87 -105.05 -0.62 -2.71 16 9 C -0.19 -3.88 9.62 -38.91 -0.37 -4.26 16 10 C -0.09 -1.82 10.01 -39.73 -0.40 -2.22 16 11 C -0.21 -4.91 7.17 -38.80 -0.28 -5.19 16 12 C 0.08 1.98 5.10 -106.87 -0.55 1.43 16 13 C -0.44 -11.77 9.57 -37.73 -0.36 -12.13 16 14 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 15 C 0.08 2.14 5.40 -17.34 -0.09 2.05 16 16 N -0.80 -20.92 13.93 55.55 0.77 -20.14 16 17 Si 0.91 20.06 24.52 -169.99 -4.17 15.89 16 18 H -0.27 -5.67 6.71 56.52 0.38 -5.29 16 19 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.24 -5.51 6.86 56.52 0.39 -5.12 16 21 C -0.13 -3.19 9.34 -38.42 -0.36 -3.55 16 22 H 0.10 0.89 8.04 -52.49 -0.42 0.46 16 23 H 0.11 1.45 6.82 -52.49 -0.36 1.09 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.11 1.94 7.59 -52.49 -0.40 1.54 16 30 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.11 2.40 4.72 -52.49 -0.25 2.15 16 32 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 33 H 0.12 2.80 7.64 -52.48 -0.40 2.40 16 LS Contribution 288.51 15.07 4.35 4.35 Total: -1.00 -27.68 288.51 -6.02 -33.70 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.95 Total: 2.92 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.39 Total: -18.64 kcal Atomic # 7 Polarization: -20.92 SS G_CDS: 0.77 Total: -20.14 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.63 Total: -18.08 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.17 Total: 15.89 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.68 -6.02 -33.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194063438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.951 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds