Wall clock time and date at job start Sun Mar 29 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35708 * 117.00022 * 2 1 4 4 C 1.38643 * 120.14796 * 359.72243 * 3 2 1 5 5 C 1.38104 * 120.08851 * 179.74315 * 4 3 2 6 6 C 1.50703 * 119.80181 * 180.25852 * 5 4 3 7 7 N 1.46500 * 109.47095 * 270.25442 * 6 5 4 8 8 C 1.46502 * 120.00100 * 270.00201 * 7 6 5 9 9 C 1.36946 * 120.00038 * 90.00257 * 7 6 5 10 10 H 1.08000 * 119.99655 * 22.37281 * 9 7 6 11 11 C 1.38811 * 119.99735 * 202.37919 * 9 7 6 12 12 N 1.31620 * 120.00422 * 11.32023 * 11 9 7 13 13 Si 1.86802 * 119.99651 * 191.32324 * 11 9 7 14 14 H 1.48508 * 109.47140 * 89.99675 * 13 11 9 15 15 H 1.48496 * 109.47209 * 209.99877 * 13 11 9 16 16 H 1.48502 * 109.47044 * 329.99890 * 13 11 9 17 17 C 1.38514 * 120.39489 * 0.51799 * 5 4 3 18 18 C 1.37827 * 120.29200 * 359.75933 * 17 5 4 19 19 C 1.39710 * 119.90070 * 359.97438 * 18 17 5 20 20 C 1.43208 * 120.18983 * 179.97438 * 19 18 17 21 21 N 3.53312 * 165.92452 * 180.02562 * 2 1 3 22 22 H 1.09006 * 109.47207 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47072 * 60.00672 * 1 2 3 24 24 H 1.08993 * 109.47024 * 300.00196 * 1 2 3 25 25 H 1.08001 * 119.95056 * 359.97438 * 4 3 2 26 26 H 1.08999 * 109.46982 * 30.25058 * 6 5 4 27 27 H 1.08996 * 109.46959 * 150.25646 * 6 5 4 28 28 H 1.08994 * 109.47036 * 94.21017 * 8 7 6 29 29 H 1.09004 * 109.46859 * 214.20901 * 8 7 6 30 30 H 1.08993 * 109.47095 * 334.20345 * 8 7 6 31 31 H 0.96999 * 119.99567 * 180.02562 * 12 11 9 32 32 H 1.07993 * 119.85209 * 179.74513 * 17 5 4 33 33 H 1.07998 * 120.04730 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2930 2.3739 -0.0058 5 6 1.9213 3.6037 -0.0004 6 6 1.0974 4.8656 -0.0009 7 7 0.8309 5.2743 -1.3823 8 6 1.7601 6.1722 -2.0727 9 6 -0.2867 4.8170 -2.0282 10 1 -1.1368 4.4725 -1.4580 11 6 -0.3269 4.7963 -3.4155 12 7 0.7731 5.0006 -4.1089 13 14 -1.9421 4.4786 -4.2985 14 1 -2.6336 5.7695 -4.5453 15 1 -1.6737 3.8051 -5.5944 16 1 -2.8031 3.6087 -3.4575 17 6 3.3041 3.6844 -0.0001 18 6 4.0674 2.5367 0.0000 19 6 3.4446 1.2861 0.0002 20 6 4.2317 0.0897 -0.0003 21 7 4.8561 -0.8593 -0.0004 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 0.5138 0.8899 25 1 0.2144 2.3192 -0.0108 26 1 0.1534 4.6834 0.5126 27 1 1.6438 5.6564 0.5130 28 1 2.4753 5.5834 -2.6469 29 1 1.2029 6.8241 -2.7456 30 1 2.2931 6.7773 -1.3394 31 1 0.7448 4.9865 -5.0784 32 1 3.7862 4.6507 0.0000 33 1 5.1452 2.6042 -0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234793997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:53 Heat of formation + Delta-G solvation = 40.693163 kcal Electronic energy + Delta-G solvation = -17356.135499 eV Core-core repulsion = 14576.387124 eV Total energy + Delta-G solvation = -2779.748375 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99863 -37.52941 -36.29998 -35.26420 -32.18274 -30.47835 -29.89136 -27.32439 -26.44992 -25.83730 -22.69304 -21.85598 -20.69268 -18.83559 -17.15741 -16.69536 -15.95754 -15.61643 -14.97485 -14.30476 -14.05381 -13.87498 -13.74331 -13.44227 -13.22182 -12.88236 -12.37493 -12.14188 -11.90666 -11.75224 -11.30470 -11.18468 -11.04606 -10.80897 -10.72034 -10.65118 -10.37204 -10.11921 -10.00481 -8.69871 -8.45514 -7.89849 -6.94499 -5.88665 -3.31595 1.20952 1.79130 3.03500 3.27590 3.32886 3.36920 3.37406 3.38711 4.20691 4.31895 4.39967 5.09844 5.18469 5.28786 5.35453 5.47355 5.50492 5.57561 5.69738 5.70349 5.88439 6.04857 6.25119 6.46105 6.54240 6.62381 6.66263 7.01143 7.13244 7.27132 7.53043 7.60822 7.68231 7.88185 8.22765 9.06325 9.67931 10.16228 11.15080 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.007284 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.428890 B = 3843.150213 C = 4402.720909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.173 3.827 4 C -0.192 4.192 5 C -0.011 4.011 6 C 0.172 3.828 7 N -0.585 5.585 8 C 0.160 3.840 9 C -0.256 4.256 10 H 0.072 0.928 11 C 0.006 3.994 12 N -0.898 5.898 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.278 1.278 17 C -0.151 4.151 18 C -0.037 4.037 19 C -0.096 4.096 20 C 0.279 3.721 21 N -0.450 5.450 22 H 0.096 0.904 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.134 0.866 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.048 0.952 30 H 0.001 0.999 31 H 0.255 0.745 32 H 0.126 0.874 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 -1.914 8.705 8.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.125 3.875 4 C -0.212 4.212 5 C -0.017 4.017 6 C 0.045 3.955 7 N -0.305 5.305 8 C 0.016 3.984 9 C -0.385 4.385 10 H 0.089 0.911 11 C -0.194 4.194 12 N -0.541 5.541 13 Si 0.736 3.264 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.204 1.204 17 C -0.170 4.170 18 C -0.058 4.058 19 C -0.101 4.101 20 C -0.034 4.034 21 N -0.127 5.127 22 H 0.115 0.885 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.152 0.848 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.019 0.981 31 H 0.066 0.934 32 H 0.144 0.856 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.374 -3.501 8.466 9.264 hybrid contribution -1.260 0.133 -0.894 1.551 sum 0.113 -3.369 7.572 8.288 Atomic orbital electron populations 1.23109 0.77838 1.03682 1.02241 1.85998 1.21930 1.27075 1.88100 1.18922 0.90288 0.84673 0.93647 1.20989 1.00226 0.90973 1.09056 1.21279 0.94384 0.97041 0.89011 1.20154 0.96331 0.90397 0.88592 1.44232 1.24961 1.50846 1.10444 1.20891 0.92627 0.91710 0.93204 1.19253 0.91260 1.38990 0.89038 0.91074 1.25114 0.97059 1.00296 0.96945 1.70062 1.25372 1.52638 1.05999 0.86237 0.82912 0.78024 0.79250 1.21245 1.21610 1.20380 1.20804 0.93430 0.97816 1.04990 1.20842 0.99518 0.89871 0.95553 1.15138 0.88077 0.88260 1.18668 1.25502 0.92744 0.92613 0.92576 1.81128 1.09914 1.10394 1.11287 0.88541 0.91711 0.92356 0.84846 0.92446 0.92665 0.95037 0.93286 0.98076 0.93420 0.85595 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -5.12 9.93 -18.83 -0.19 -5.31 16 3 C 0.17 2.92 6.69 -38.71 -0.26 2.66 16 4 C -0.19 -3.27 8.67 -39.48 -0.34 -3.61 16 5 C -0.01 -0.20 5.47 -104.57 -0.57 -0.77 16 6 C 0.17 3.12 5.82 -5.19 -0.03 3.09 16 7 N -0.59 -13.35 2.91 -182.50 -0.53 -13.88 16 8 C 0.16 3.63 9.01 59.85 0.54 4.17 16 9 C -0.26 -6.43 9.67 -15.06 -0.15 -6.57 16 10 H 0.07 1.72 7.84 -52.49 -0.41 1.31 16 11 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 12 N -0.90 -24.82 10.59 55.49 0.59 -24.23 16 13 Si 0.91 20.65 29.57 -169.99 -5.03 15.62 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 C -0.15 -2.36 9.67 -39.63 -0.38 -2.75 16 18 C -0.04 -0.55 9.75 -39.18 -0.38 -0.93 16 19 C -0.10 -1.59 5.75 -106.70 -0.61 -2.20 16 20 C 0.28 4.85 14.87 -22.47 -0.33 4.52 16 21 N -0.45 -8.37 18.54 41.84 0.78 -7.59 16 22 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.84 7.65 -51.93 -0.40 0.44 16 24 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 25 H 0.13 2.16 6.30 -52.49 -0.33 1.83 16 26 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 27 H 0.06 0.88 7.80 -51.93 -0.41 0.47 16 28 H 0.03 0.78 7.42 -51.93 -0.39 0.40 16 29 H 0.05 1.21 7.19 -51.93 -0.37 0.84 16 30 H 0.00 0.01 7.84 -51.93 -0.41 -0.39 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -29.48 293.43 -5.51 -34.99 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -3.93 Total: -2.98 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.62 Total: -1.04 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.83 Total: -45.71 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.19 Total: -5.31 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.48 -5.51 -34.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234793997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.683 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds