Wall clock time and date at job start Sun Mar 29 2020 22:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00008 * 2 1 4 4 H 1.48505 * 109.46801 * 269.99851 * 3 2 1 5 5 H 1.48496 * 109.47109 * 29.99663 * 3 2 1 6 6 H 1.48500 * 109.46910 * 150.00111 * 3 2 1 7 7 C 1.37878 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99999 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99873 * 180.02562 * 10 9 7 12 12 O 1.21580 * 120.00367 * 4.73927 * 11 10 9 13 13 N 1.34782 * 119.99772 * 185.01604 * 11 10 9 14 14 C 1.46535 * 124.98031 * 354.66186 * 13 11 10 15 15 C 1.53748 * 105.19537 * 180.02562 * 14 13 11 16 16 C 1.51210 * 104.58490 * 359.97438 * 15 14 13 17 17 C 1.38193 * 130.97095 * 179.97438 * 16 15 14 18 18 C 1.38221 * 120.14911 * 179.19609 * 17 16 15 19 19 C 1.38301 * 119.82678 * 0.74459 * 18 17 16 20 20 C 1.37837 * 120.21731 * 359.53077 * 19 18 17 21 21 C 1.38552 * 108.56539 * 359.74206 * 16 15 14 22 22 H 0.97003 * 120.00094 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47265 * 59.99645 * 9 7 2 24 24 H 1.09003 * 109.47247 * 299.99504 * 9 7 2 25 25 H 0.96995 * 120.00120 * 359.97438 * 10 9 7 26 26 H 1.09001 * 110.29764 * 298.92522 * 14 13 11 27 27 H 1.08996 * 110.29878 * 60.97360 * 14 13 11 28 28 H 1.09000 * 110.41187 * 118.77510 * 15 14 13 29 29 H 1.09000 * 110.40878 * 241.21937 * 15 14 13 30 30 H 1.08007 * 119.92260 * 0.03071 * 17 16 15 31 31 H 1.08001 * 120.08729 * 180.25623 * 18 17 16 32 32 H 1.08001 * 119.88902 * 179.54026 * 19 18 17 33 33 H 1.08009 * 119.85290 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 5.3249 -2.8216 0.0009 12 8 6.1143 -1.9011 0.0889 13 7 5.7750 -4.0879 -0.1013 14 6 4.9271 -5.2830 -0.1070 15 6 5.8995 -6.4664 -0.2411 16 6 7.2691 -5.8286 -0.3037 17 6 8.5258 -6.3908 -0.4236 18 6 9.6458 -5.5825 -0.4760 19 6 9.5073 -4.2090 -0.3927 20 6 8.2562 -3.6442 -0.2674 21 6 7.1194 -4.4535 -0.2236 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6808 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.3695 -3.3126 -0.0001 26 1 4.3701 -5.3559 0.8271 27 1 4.2419 -5.2564 -0.9542 28 1 5.8238 -7.1209 0.6272 29 1 5.6972 -7.0226 -1.1564 30 1 8.6320 -7.4636 -0.4900 31 1 10.6271 -6.0228 -0.5739 32 1 10.3824 -3.5768 -0.4261 33 1 8.1549 -2.5708 -0.2032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000242836251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:39 Heat of formation + Delta-G solvation = 3.522775 kcal Electronic energy + Delta-G solvation = -17141.031840 eV Core-core repulsion = 14359.671636 eV Total energy + Delta-G solvation = -2781.360204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.97942 -38.62940 -36.20677 -34.47958 -32.47382 -32.16776 -29.88856 -28.98411 -27.65752 -23.60759 -23.15274 -21.80719 -21.21207 -19.85107 -18.19623 -16.58771 -16.31352 -16.23470 -15.68566 -14.86859 -14.77456 -14.43719 -14.00066 -13.55570 -13.22824 -12.72414 -12.67278 -12.58416 -12.41636 -12.31367 -11.80750 -11.60016 -11.04670 -10.90561 -10.81418 -10.13326 -10.00433 -9.68167 -9.52129 -8.83224 -8.75095 -8.33224 -7.56590 -6.25012 -4.27831 1.38775 1.48260 2.77944 3.25041 3.32250 3.40371 3.47421 3.93321 4.25609 4.31022 4.48299 4.66238 4.98277 5.02659 5.10468 5.13664 5.25477 5.42516 5.52863 5.66392 5.74782 5.75639 6.04819 6.24738 6.46606 6.55172 6.63744 6.71055 7.02606 7.10234 7.16218 7.28711 7.43822 8.16106 8.49100 8.71860 8.95967 9.34587 10.86778 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.042817 B = 0.005146 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.792397 B = 5440.035816 C = 6060.595384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.236 3.764 10 N -0.712 5.712 11 C 0.704 3.296 12 O -0.580 6.580 13 N -0.573 5.573 14 C 0.097 3.903 15 C -0.080 4.080 16 C -0.152 4.152 17 C -0.078 4.078 18 C -0.156 4.156 19 C -0.092 4.092 20 C -0.138 4.138 21 C 0.181 3.819 22 H 0.268 0.732 23 H 0.027 0.973 24 H 0.021 0.979 25 H 0.395 0.605 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.127 -13.879 -0.897 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.114 3.886 10 N -0.363 5.363 11 C 0.406 3.594 12 O -0.458 6.458 13 N -0.299 5.299 14 C -0.026 4.026 15 C -0.117 4.117 16 C -0.156 4.156 17 C -0.097 4.097 18 C -0.176 4.176 19 C -0.111 4.111 20 C -0.159 4.159 21 C 0.084 3.916 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.229 0.771 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.305 -12.881 -0.819 19.267 hybrid contribution -0.131 0.552 -0.013 0.567 sum 14.174 -12.330 -0.832 18.804 Atomic orbital electron populations 1.69876 1.06202 1.27511 1.49229 1.24764 0.94791 0.99144 0.93767 0.86820 0.80626 0.83175 0.79118 1.19783 1.20810 1.18422 1.21045 0.88312 0.95289 1.53624 0.90238 1.19461 0.95108 0.77081 0.96939 1.45476 1.03183 1.11561 1.76129 1.15822 0.84043 0.80854 0.78641 1.90845 1.55301 1.42170 1.57437 1.45185 1.05260 1.05888 1.73600 1.22129 0.93967 0.83376 1.03122 1.21024 0.90322 0.96927 1.03446 1.19971 0.95027 0.92746 1.07879 1.20273 0.90418 0.99424 0.99554 1.20923 0.98132 0.93682 1.04828 1.20907 0.96518 0.94989 0.98700 1.21021 0.90119 1.01272 1.03495 1.18213 0.84002 0.92983 0.96438 0.92180 0.95517 0.96127 0.77122 0.89987 0.89912 0.89346 0.89326 0.86117 0.86054 0.85814 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.54 -14.89 9.83 -34.44 -0.34 -15.22 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C 0.24 5.86 4.50 -5.20 -0.02 5.84 16 10 N -0.71 -14.95 5.50 -66.42 -0.37 -15.31 16 11 C 0.70 14.63 8.42 -86.91 -0.73 13.90 16 12 O -0.58 -13.86 14.54 5.30 0.08 -13.79 16 13 N -0.57 -9.62 3.13 -118.25 -0.37 -9.99 16 14 C 0.10 1.17 6.34 -3.63 -0.02 1.14 16 15 C -0.08 -0.79 6.94 -27.24 -0.19 -0.98 16 16 C -0.15 -1.94 6.23 -104.27 -0.65 -2.59 16 17 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 18 C -0.16 -1.70 10.06 -39.56 -0.40 -2.09 16 19 C -0.09 -1.16 10.02 -39.70 -0.40 -1.56 16 20 C -0.14 -2.20 9.46 -39.21 -0.37 -2.57 16 21 C 0.18 2.90 6.62 -83.57 -0.55 2.34 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 24 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 25 H 0.39 7.27 7.26 -40.82 -0.30 6.98 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.14 2.54 6.30 -52.48 -0.33 2.21 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -32.53 280.46 -8.43 -40.96 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.93 Total: 3.61 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -4.17 Total: -0.89 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.04 Total: -50.81 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.53 -8.43 -40.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242836251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.484 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds