Wall clock time and date at job start Sun Mar 29 2020 22:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38638 * 119.80616 * 2 1 4 4 C 1.38033 * 120.46313 * 180.02562 * 3 2 1 5 5 C 1.38540 * 119.89399 * 0.04662 * 4 3 2 6 6 O 1.35304 * 133.77652 * 180.02562 * 5 4 3 7 7 C 1.34462 * 108.18748 * 179.97438 * 6 5 4 8 8 N 1.37653 * 124.95719 * 179.97438 * 7 6 5 9 9 C 1.46502 * 120.00097 * 179.97438 * 8 7 6 10 10 C 1.46505 * 119.99770 * 359.97438 * 8 7 6 11 11 C 1.50698 * 109.47232 * 90.00139 * 10 8 7 12 12 H 1.08002 * 119.99877 * 359.97438 * 11 10 8 13 13 C 1.37872 * 119.99941 * 179.97438 * 11 10 8 14 14 N 1.31514 * 120.00385 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99944 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47222 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47280 * 120.00405 * 15 13 11 18 18 H 1.48505 * 109.47027 * 240.00183 * 15 13 11 19 19 N 1.30851 * 110.08538 * 359.76044 * 7 6 5 20 20 C 1.36150 * 108.69013 * 0.38256 * 19 7 6 21 21 C 1.37767 * 119.80324 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.47005 * 269.97999 * 1 2 3 23 23 H 1.09004 * 109.46725 * 29.97508 * 1 2 3 24 24 H 1.08995 * 109.47295 * 149.97741 * 1 2 3 25 25 H 1.07997 * 119.76955 * 0.02562 * 3 2 1 26 26 H 1.07995 * 120.05356 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.46609 * 90.00101 * 9 8 7 28 28 H 1.08993 * 109.46935 * 209.99972 * 9 8 7 29 29 H 1.08994 * 109.47232 * 330.00613 * 9 8 7 30 30 H 1.09001 * 109.46467 * 209.99958 * 10 8 7 31 31 H 1.08999 * 109.47110 * 329.99821 * 10 8 7 32 32 H 0.97001 * 120.00479 * 180.02562 * 14 13 11 33 33 H 1.08001 * 120.13662 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2030 0.0000 4 6 3.5763 1.2188 -0.0005 5 6 4.2805 0.0257 -0.0020 6 8 5.5977 -0.2838 -0.0025 7 6 5.7140 -1.6234 -0.0036 8 7 6.9062 -2.3116 -0.0048 9 6 6.9063 -3.7766 -0.0054 10 6 8.1748 -1.5789 -0.0055 11 6 8.6110 -1.3283 1.4151 12 1 8.0037 -1.6792 2.2363 13 6 9.7853 -0.6509 1.6663 14 7 10.5246 -0.2231 0.6663 15 14 10.3256 -0.3396 3.4272 16 1 9.3259 -0.9172 4.3612 17 1 11.6462 -0.9775 3.6600 18 1 10.4344 1.1230 3.6604 19 7 4.5286 -2.1774 0.0012 20 6 3.5873 -1.1937 -0.0029 21 6 2.1917 -1.1955 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8903 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6492 2.1342 0.0004 26 1 4.1064 2.1597 -0.0001 27 1 6.9056 -4.1394 -1.0333 28 1 7.7967 -4.1400 0.5076 29 1 6.0168 -4.1402 0.5089 30 1 8.9341 -2.1678 -0.5202 31 1 8.0440 -0.6263 -0.5189 32 1 11.3510 0.2531 0.8431 33 1 1.6507 -2.1302 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260267586.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:55 Heat of formation + Delta-G solvation = 41.409942 kcal Electronic energy + Delta-G solvation = -17163.042858 eV Core-core repulsion = 14383.325564 eV Total energy + Delta-G solvation = -2779.717293 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.46645 -38.05969 -36.31571 -33.94982 -32.72502 -31.80423 -29.35730 -27.94916 -26.89116 -25.35715 -23.29860 -21.72549 -21.40127 -20.44154 -17.27825 -16.98526 -16.74589 -16.00125 -15.65932 -14.80917 -14.56923 -13.93991 -13.69834 -13.61855 -13.40522 -13.07309 -12.29385 -12.13577 -11.88841 -11.75767 -11.56868 -11.42999 -11.12297 -10.96895 -10.89810 -10.77778 -10.25438 -9.86396 -9.70256 -8.78783 -8.62767 -8.23112 -6.97549 -6.20960 -4.30789 1.31225 1.60461 2.62408 3.18062 3.20200 3.28417 3.33628 3.86880 4.04958 4.30571 4.84530 4.96089 5.10677 5.16456 5.37407 5.50220 5.56594 5.61776 5.72830 5.85148 5.93207 5.95506 6.12359 6.23768 6.36631 6.52456 6.69705 6.72772 6.87394 7.04507 7.08395 7.44562 7.72902 7.95758 7.96964 8.49470 8.77084 9.36585 10.84313 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030669 B = 0.005681 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.745262 B = 4927.146189 C = 5405.629522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.083 4.083 3 C -0.134 4.134 4 C -0.072 4.072 5 C -0.025 4.025 6 O -0.221 6.221 7 C 0.531 3.469 8 N -0.551 5.551 9 C 0.113 3.887 10 C 0.246 3.754 11 C -0.541 4.541 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.891 5.891 15 Si 0.901 3.099 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 N -0.578 5.578 20 C 0.083 3.917 21 C -0.099 4.099 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.266 0.734 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 -0.301 -2.044 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.084 4.084 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.076 4.076 6 O -0.112 6.112 7 C 0.231 3.769 8 N -0.272 5.272 9 C -0.029 4.029 10 C 0.127 3.873 11 C -0.580 4.580 12 H 0.081 0.919 13 C -0.138 4.138 14 N -0.529 5.529 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.323 5.323 20 C -0.031 4.031 21 C -0.120 4.120 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.665 -0.902 -2.092 13.853 hybrid contribution 0.838 1.010 0.973 1.633 sum -12.827 0.108 -1.119 12.876 Atomic orbital electron populations 1.20708 0.90949 1.02529 1.02135 1.19584 0.95846 0.92416 1.00578 1.20570 0.92160 0.97636 1.04920 1.19748 0.93024 0.94342 1.01964 1.20058 0.80820 0.97318 1.09398 1.84554 1.25304 1.24156 1.77233 1.21710 0.88778 0.77253 0.89205 1.46281 1.01168 1.05653 1.74133 1.21605 1.03339 0.76842 1.01138 1.19581 0.77350 0.92195 0.98142 1.21515 1.07000 1.37432 0.92047 0.91937 1.24939 0.96062 0.94929 0.97831 1.69929 1.14307 1.37795 1.30892 0.86388 0.78542 0.78174 0.84081 1.19637 1.20671 1.20699 1.71097 0.95659 1.29209 1.36348 1.19729 0.94732 0.88434 1.00250 1.19886 0.89718 0.97957 1.04407 0.91349 0.91637 0.91670 0.85252 0.85414 0.93277 0.90135 0.91001 0.93385 0.94269 0.92427 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.00 36.00 0.36 -0.62 16 2 C -0.08 -1.10 5.88 -104.65 -0.61 -1.72 16 3 C -0.13 -1.78 9.68 -39.51 -0.38 -2.16 16 4 C -0.07 -1.16 10.06 -39.55 -0.40 -1.56 16 5 C -0.02 -0.50 7.42 -38.71 -0.29 -0.78 16 6 O -0.22 -5.15 10.13 2.43 0.02 -5.12 16 7 C 0.53 12.06 8.37 -87.65 -0.73 11.32 16 8 N -0.55 -12.17 2.94 -185.46 -0.54 -12.71 16 9 C 0.11 1.98 10.55 59.85 0.63 2.61 16 10 C 0.25 6.16 5.30 -5.19 -0.03 6.14 16 11 C -0.54 -14.76 9.39 -34.44 -0.32 -15.09 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 14 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 15 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 N -0.58 -12.42 10.58 -12.13 -0.13 -12.55 16 20 C 0.08 1.63 7.23 -84.69 -0.61 1.02 16 21 C -0.10 -1.57 9.74 -39.26 -0.38 -1.95 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 24 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 29 H 0.07 1.22 7.60 -51.93 -0.39 0.82 16 30 H 0.05 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.04 1.06 7.66 -51.93 -0.40 0.66 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 290.99 15.07 4.39 4.39 Total: -1.00 -30.54 290.99 -7.54 -38.08 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.13 Total: -2.59 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.87 Total: -1.09 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.06 Total: -49.78 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.02 Total: -5.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.54 -7.54 -38.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260267586.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.494 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds