Wall clock time and date at job start Sun Mar 29 2020 22:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36876 * 119.99774 * 2 1 4 4 H 1.08003 * 119.99808 * 201.95537 * 3 2 1 5 5 C 1.38847 * 120.00164 * 21.95340 * 3 2 1 6 6 N 1.31537 * 119.99895 * 15.76828 * 5 3 2 7 7 Si 1.86803 * 120.00082 * 195.76446 * 5 3 2 8 8 H 1.48498 * 109.47059 * 60.00332 * 7 5 3 9 9 H 1.48503 * 109.47236 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47098 * 300.00298 * 7 5 3 11 11 C 1.38594 * 119.99916 * 179.97438 * 2 1 3 12 12 C 1.40282 * 119.23553 * 189.43575 * 11 2 1 13 13 C 1.36212 * 119.86489 * 180.02562 * 12 11 2 14 14 C 1.41019 * 118.29650 * 359.97438 * 13 12 11 15 15 C 1.40335 * 121.24908 * 179.97438 * 14 13 12 16 16 C 1.36228 * 119.70178 * 179.74834 * 15 14 13 17 17 C 1.39267 * 120.87929 * 0.56365 * 16 15 14 18 18 C 1.36321 * 121.01204 * 359.42698 * 17 16 15 19 19 F 1.35101 * 120.14666 * 180.30251 * 18 17 16 20 20 C 1.40805 * 119.70647 * 0.28230 * 18 17 16 21 21 N 1.31808 * 119.23929 * 9.46149 * 11 2 1 22 22 H 1.09001 * 109.47185 * 273.03062 * 1 2 3 23 23 H 1.08999 * 109.47191 * 33.03882 * 1 2 3 24 24 H 1.09003 * 109.47194 * 153.03610 * 1 2 3 25 25 H 0.97002 * 120.00075 * 179.97438 * 6 5 3 26 26 H 1.08004 * 120.06615 * 359.97438 * 12 11 2 27 27 H 1.08008 * 120.85485 * 180.02562 * 13 12 11 28 28 H 1.08003 * 120.14870 * 0.05230 * 15 14 13 29 29 H 1.07998 * 119.55674 * 180.29478 * 16 15 14 30 30 H 1.08001 * 119.49202 * 179.71222 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1706 1.2193 -0.3497 5 6 1.5306 2.3443 0.4495 6 7 0.4228 2.2673 1.1545 7 14 2.2715 4.0127 0.0532 8 1 2.3355 4.1885 -1.4199 9 1 1.4271 5.0821 0.6437 10 1 3.6411 4.0936 0.6214 11 6 2.1580 -1.2003 0.0005 12 6 3.5463 -1.1898 0.2012 13 6 4.2402 -2.3619 0.2037 14 6 3.5268 -3.5615 0.0019 15 6 4.1794 -4.8038 -0.0079 16 6 3.4584 -5.9435 -0.2006 17 6 2.0811 -5.8928 -0.4000 18 6 1.4142 -4.7039 -0.3967 19 9 0.0768 -4.6756 -0.5858 20 6 2.1253 -3.5055 -0.1947 21 7 1.4974 -2.3252 -0.1880 22 1 -0.3633 0.0543 1.0262 23 1 -0.3633 0.8615 -0.5603 24 1 -0.3634 -0.9160 -0.4660 25 1 -0.0093 3.0768 1.4689 26 1 4.0641 -0.2541 0.3526 27 1 5.3093 -2.3724 0.3571 28 1 5.2477 -4.8565 0.1415 29 1 3.9624 -6.8987 -0.2029 30 1 1.5322 -6.8099 -0.5552 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260409719.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:49 Heat of formation + Delta-G solvation = 8.480954 kcal Electronic energy + Delta-G solvation = -17045.400755 eV Core-core repulsion = 14140.795249 eV Total energy + Delta-G solvation = -2904.605506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.58651 -41.33950 -38.91683 -36.65724 -34.04545 -33.64009 -30.86947 -30.11258 -28.52596 -26.29624 -24.46201 -23.19179 -22.53957 -20.11263 -18.52541 -18.38949 -17.95431 -16.98603 -16.53405 -16.44848 -16.07547 -15.64478 -15.49444 -14.92696 -14.43533 -14.19935 -14.08522 -13.52557 -13.34981 -13.05667 -12.85490 -12.64555 -12.54182 -12.37157 -12.16587 -11.94236 -11.18875 -11.13924 -10.36747 -10.05494 -9.14016 -8.63929 -8.36192 -5.88868 -0.28110 0.21845 1.23533 1.41437 1.47050 1.54166 2.15557 2.20926 2.84409 2.91595 3.42377 3.44288 3.71216 4.03078 4.24213 4.28287 4.41340 4.49431 4.64981 4.73697 4.87895 4.96522 5.14137 5.17550 5.19761 5.29442 5.38993 5.47467 5.68347 5.72913 5.94424 6.19066 6.48782 7.11900 7.19725 7.79531 8.57749 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.039120 B = 0.006292 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.569436 B = 4448.725033 C = 5074.765051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.142 3.858 2 N -0.430 5.430 3 C -0.339 4.339 4 H 0.110 0.890 5 C -0.010 4.010 6 N -0.894 5.894 7 Si 1.004 2.996 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.258 1.258 11 C 0.357 3.643 12 C -0.214 4.214 13 C -0.024 4.024 14 C -0.185 4.185 15 C -0.058 4.058 16 C -0.152 4.152 17 C -0.105 4.105 18 C 0.029 3.971 19 F -0.156 7.156 20 C 0.146 3.854 21 N -0.625 5.625 22 H 0.036 0.964 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.276 0.724 26 H 0.138 0.862 27 H 0.178 0.822 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 -9.569 -1.816 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.120 5.120 3 C -0.468 4.468 4 H 0.127 0.873 5 C -0.213 4.213 6 N -0.529 5.529 7 Si 0.826 3.174 8 H -0.192 1.192 9 H -0.205 1.205 10 H -0.182 1.182 11 C 0.108 3.892 12 C -0.238 4.238 13 C -0.049 4.049 14 C -0.192 4.192 15 C -0.077 4.077 16 C -0.172 4.172 17 C -0.125 4.125 18 C 0.007 3.993 19 F -0.135 7.135 20 C 0.017 3.983 21 N -0.352 5.352 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.155 0.845 27 H 0.195 0.805 28 H 0.182 0.818 29 H 0.186 0.814 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.703 -9.068 -1.830 12.038 hybrid contribution -0.080 1.186 0.093 1.192 sum 7.624 -7.882 -1.737 11.102 Atomic orbital electron populations 1.21093 0.80263 0.98717 1.00082 1.42752 1.05314 1.02118 1.61832 1.20025 1.00484 0.83901 1.42344 0.87268 1.26405 0.96949 1.03880 0.94092 1.70215 1.19920 1.31109 1.31705 0.84823 0.78508 0.75249 0.78838 1.19167 1.20547 1.18182 1.19021 0.89973 0.86034 0.94153 1.21472 0.93088 1.00790 1.08402 1.21537 1.00923 0.89645 0.92773 1.18656 0.92380 0.96582 1.11535 1.21285 1.01173 0.89829 0.95374 1.20815 0.91983 1.00077 1.04275 1.21078 0.96565 0.95473 0.99431 1.17541 0.77083 0.93861 1.10838 1.91374 1.31404 1.97390 1.93375 1.18937 0.91828 0.90732 0.96779 1.67427 1.39462 0.97314 1.31014 0.94520 0.93135 0.93540 0.91461 0.84469 0.80491 0.81773 0.81445 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.53 8.81 127.77 1.13 8.66 16 2 N -0.43 -22.98 3.11 -541.02 -1.68 -24.67 16 3 C -0.34 -17.50 8.85 84.05 0.74 -16.75 16 4 H 0.11 5.22 6.41 -2.91 -0.02 5.20 16 5 C -0.01 -0.48 5.02 84.88 0.43 -0.06 16 6 N -0.89 -47.73 10.82 21.65 0.23 -47.49 16 7 Si 1.00 38.83 29.58 68.60 2.03 40.86 16 8 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 9 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 10 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 11 C 0.36 17.92 7.31 133.66 0.98 18.90 16 12 C -0.21 -8.93 9.15 22.29 0.20 -8.73 16 13 C -0.02 -0.81 9.88 22.48 0.22 -0.59 16 14 C -0.19 -6.49 5.74 -21.25 -0.12 -6.61 16 15 C -0.06 -1.44 9.77 22.31 0.22 -1.22 16 16 C -0.15 -3.41 9.95 22.05 0.22 -3.19 16 17 C -0.11 -2.97 9.92 22.07 0.22 -2.75 16 18 C 0.03 1.12 7.31 22.45 0.16 1.29 16 19 F -0.16 -6.72 17.12 44.97 0.77 -5.95 16 20 C 0.15 6.35 6.61 40.32 0.27 6.62 16 21 N -0.62 -31.72 8.82 -186.03 -1.64 -33.36 16 22 H 0.04 2.03 7.48 -2.39 -0.02 2.02 16 23 H 0.05 2.66 7.20 -2.39 -0.02 2.65 16 24 H 0.05 2.41 7.14 -2.39 -0.02 2.40 16 25 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 26 H 0.14 5.46 6.32 -2.91 -0.02 5.44 16 27 H 0.18 3.97 8.06 -2.91 -0.02 3.94 16 28 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 30 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -65.82 264.19 5.54 -60.28 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.17 Total: 14.78 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.66 Total: -4.43 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.09 Total: -105.52 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.77 Total: -5.95 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -65.82 5.54 -60.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409719.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.757 kcal (2) G-P(sol) polarization free energy of solvation -65.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds