Wall clock time and date at job start Sun Mar 29 2020 22:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38074 * 120.05394 * 2 1 4 4 C 1.38599 * 120.46318 * 179.97438 * 3 2 1 5 5 C 1.37817 * 120.38889 * 0.02672 * 4 3 2 6 6 C 1.39513 * 119.73220 * 359.97438 * 5 4 3 7 7 N 1.36141 * 133.67621 * 179.66451 * 6 5 4 8 8 C 1.30855 * 108.69913 * 179.89309 * 7 6 5 9 9 N 1.37649 * 124.95468 * 180.19259 * 8 7 6 10 10 C 1.46489 * 120.00133 * 0.25542 * 9 8 7 11 11 H 1.08996 * 109.47506 * 34.99536 * 10 9 8 12 12 C 1.53005 * 109.47151 * 274.99810 * 10 9 8 13 13 C 1.50706 * 109.47372 * 155.00148 * 10 9 8 14 14 H 1.07996 * 119.99649 * 359.97438 * 13 10 9 15 15 C 1.37868 * 120.00044 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00607 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 120.00002 * 179.97438 * 15 13 10 18 18 H 1.48509 * 109.46691 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47372 * 120.00024 * 17 15 13 20 20 H 1.48498 * 109.47401 * 240.00478 * 17 15 13 21 21 O 1.34459 * 110.08572 * 0.41471 * 8 7 6 22 22 C 1.35300 * 108.19806 * 359.74305 * 21 8 7 23 23 H 1.08997 * 109.47391 * 270.02674 * 1 2 3 24 24 H 1.08999 * 109.46884 * 30.02386 * 1 2 3 25 25 H 1.08997 * 109.47146 * 150.02390 * 1 2 3 26 26 H 1.08000 * 119.76606 * 359.97290 * 3 2 1 27 27 H 1.08000 * 119.80566 * 180.02562 * 4 3 2 28 28 H 1.07994 * 120.13222 * 179.97438 * 5 4 3 29 29 H 0.97002 * 119.99315 * 180.25318 * 9 8 7 30 30 H 1.09004 * 109.47043 * 59.99775 * 12 10 9 31 31 H 1.09003 * 109.47451 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.47116 * 300.00355 * 12 10 9 33 33 H 0.96997 * 120.00330 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1951 0.0000 4 6 3.5844 1.2050 0.0005 5 6 4.2900 0.0212 0.0005 6 6 3.6037 -1.1934 0.0005 7 7 3.9984 -2.4964 -0.0053 8 6 2.9338 -3.2572 0.0003 9 7 2.9482 -4.6336 0.0007 10 6 4.2244 -5.3528 0.0004 11 1 4.9546 -4.7976 0.5892 12 6 4.7298 -5.4942 -1.4369 13 6 4.0302 -6.7211 0.6013 14 1 3.0538 -7.0244 0.9492 15 6 5.0990 -7.5856 0.7071 16 7 6.2879 -7.2165 0.2831 17 14 4.8584 -9.2814 1.4527 18 1 3.4370 -9.4510 1.8483 19 1 5.2204 -10.3178 0.4527 20 1 5.7261 -9.4237 2.6493 21 8 1.8238 -2.4984 0.0005 22 6 2.2005 -1.1988 0.0007 23 1 -0.3634 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6555 2.1287 -0.0004 27 1 4.1145 2.1459 0.0009 28 1 5.3699 0.0337 0.0005 29 1 2.1132 -5.1273 0.0013 30 1 4.8702 -4.5045 -1.8717 31 1 5.6792 -6.0297 -1.4373 32 1 3.9996 -6.0494 -2.0258 33 1 7.0399 -7.8246 0.3578 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260487956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:19 Heat of formation + Delta-G solvation = 35.043604 kcal Electronic energy + Delta-G solvation = -17148.804026 eV Core-core repulsion = 14368.810667 eV Total energy + Delta-G solvation = -2779.993358 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.57700 -37.94995 -36.17299 -34.20395 -32.74304 -31.84602 -29.55162 -27.91467 -26.72016 -25.34605 -22.88426 -22.23209 -20.81946 -20.02306 -18.24854 -17.19606 -16.35329 -16.18866 -15.78370 -14.97736 -14.57897 -13.79138 -13.51931 -13.41340 -13.30127 -12.61245 -12.33046 -12.27503 -11.88443 -11.72661 -11.42500 -11.15559 -11.04918 -10.89298 -10.61181 -10.34918 -10.30420 -9.65272 -9.25184 -9.02720 -8.56311 -8.26409 -7.05693 -6.22311 -4.32431 1.23338 1.57317 2.55866 3.13997 3.19696 3.27845 3.30914 4.02533 4.04676 4.28046 4.79062 4.95630 5.10885 5.28477 5.35390 5.38000 5.51838 5.59815 5.79158 5.93508 6.06824 6.40044 6.51193 6.62505 6.64311 6.74336 6.92174 7.00048 7.00624 7.31420 7.55786 7.59494 7.78970 8.03527 8.23528 8.57606 8.81668 9.34578 10.83693 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.044613 B = 0.004989 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.465679 B = 5611.325822 C = 5978.932288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.046 4.046 3 C -0.138 4.138 4 C -0.107 4.107 5 C -0.100 4.100 6 C 0.085 3.915 7 N -0.550 5.550 8 C 0.516 3.484 9 N -0.654 5.654 10 C 0.283 3.717 11 H 0.057 0.943 12 C -0.151 4.151 13 C -0.538 4.538 14 H 0.065 0.935 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.281 1.281 21 O -0.247 6.247 22 C -0.025 4.025 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.406 0.594 30 H 0.019 0.981 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.900 12.479 -1.050 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.047 4.047 3 C -0.158 4.158 4 C -0.127 4.127 5 C -0.121 4.121 6 C -0.030 4.030 7 N -0.293 5.293 8 C 0.214 3.786 9 N -0.295 5.295 10 C 0.184 3.816 11 H 0.075 0.925 12 C -0.210 4.210 13 C -0.577 4.577 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.518 5.518 17 Si 0.733 3.267 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.207 1.207 21 O -0.140 6.140 22 C -0.076 4.076 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.242 0.758 30 H 0.038 0.962 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.936 12.062 -1.073 13.955 hybrid contribution -1.099 -1.015 0.359 1.539 sum -8.035 11.046 -0.714 13.678 Atomic orbital electron populations 1.20734 0.90961 1.02746 1.02385 1.18576 0.95640 0.88253 1.02229 1.20595 0.94095 0.95854 1.05221 1.20847 0.93876 0.97343 1.00597 1.20145 0.99977 0.88772 1.03192 1.19879 0.90672 0.92581 0.99835 1.71280 1.24881 0.99103 1.34068 1.22155 0.78676 0.87850 0.89945 1.44849 1.13062 0.95718 1.75921 1.19010 0.77660 0.90379 0.94543 0.92473 1.22158 1.03247 0.98503 0.97053 1.21192 0.96271 0.98285 1.41932 0.91731 1.24852 0.94810 0.98793 0.95009 1.69902 1.00013 1.36419 1.45428 0.86319 0.78379 0.83107 0.78868 1.19672 1.20746 1.20738 1.84373 1.35391 1.15765 1.78430 1.19739 0.94844 0.82464 1.10535 0.91170 0.91279 0.91626 0.85294 0.85440 0.85303 0.75831 0.96193 0.88640 0.95288 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.02 36.00 0.36 -0.90 16 2 C -0.05 -0.67 5.88 -104.59 -0.62 -1.28 16 3 C -0.14 -1.70 9.69 -39.51 -0.38 -2.09 16 4 C -0.11 -1.36 10.02 -39.60 -0.40 -1.76 16 5 C -0.10 -1.60 10.10 -39.26 -0.40 -2.00 16 6 C 0.08 1.66 7.23 -84.69 -0.61 1.05 16 7 N -0.55 -12.41 10.67 -12.13 -0.13 -12.54 16 8 C 0.52 11.10 8.93 -87.65 -0.78 10.32 16 9 N -0.65 -14.05 5.18 -57.05 -0.30 -14.34 16 10 C 0.28 7.03 2.68 -69.08 -0.19 6.85 16 11 H 0.06 1.60 7.75 -51.93 -0.40 1.20 16 12 C -0.15 -3.66 9.27 37.16 0.34 -3.31 16 13 C -0.54 -13.94 8.73 -34.44 -0.30 -14.24 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 16 N -0.88 -24.09 11.32 55.43 0.63 -23.46 16 17 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 O -0.25 -4.84 10.79 2.45 0.03 -4.81 16 22 C -0.02 -0.45 7.08 -38.70 -0.27 -0.73 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 26 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 27 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.41 7.70 8.66 -40.82 -0.35 7.34 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 287.04 15.07 4.33 4.33 Total: -1.00 -28.94 287.04 -7.79 -36.73 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.99 Total: 5.24 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.34 Total: -6.36 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.20 Total: -50.34 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.03 Total: -4.81 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.94 -7.79 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260487956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.777 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds