Wall clock time and date at job start Sun Mar 29 2020 22:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46691 * 299.99226 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99608 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.37651 * 119.99966 * 180.02562 * 12 11 10 14 14 N 1.30853 * 124.96136 * 180.02562 * 13 12 11 15 15 C 1.36151 * 108.69688 * 179.97438 * 14 13 12 16 16 C 1.39550 * 133.66955 * 180.02562 * 15 14 13 17 17 C 1.37767 * 119.72761 * 179.97438 * 16 15 14 18 18 C 1.38639 * 120.39366 * 0.02562 * 17 16 15 19 19 C 1.38031 * 120.45985 * 359.95974 * 18 17 16 20 20 C 1.38538 * 119.89921 * 0.03708 * 19 18 17 21 21 O 1.34462 * 124.95823 * 359.68998 * 13 12 11 22 22 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 24 24 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 25 25 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 26 26 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 27 27 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 28 28 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 29 29 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 30 30 H 1.07996 * 120.13102 * 359.97330 * 16 15 14 31 31 H 1.07999 * 119.79914 * 179.97438 * 17 16 15 32 32 H 1.08003 * 119.76850 * 179.97438 * 18 17 16 33 33 H 1.08004 * 120.04739 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9732 -7.3985 0.0019 14 7 2.7343 -8.4629 0.0029 15 6 1.9391 -9.5680 0.0033 16 6 2.1957 -10.9397 0.0047 17 6 1.1453 -11.8312 0.0052 18 6 -0.1633 -11.3733 0.0037 19 6 -0.4308 -10.0192 0.0026 20 6 0.6136 -9.1089 0.0022 21 8 0.6774 -7.7575 0.0075 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6045 -0.8894 27 1 0.8537 -5.0446 0.8914 28 1 0.8531 -5.0451 -0.8886 29 1 3.3857 -5.9235 0.0014 30 1 3.2135 -11.3009 0.0054 31 1 1.3426 -12.8930 0.0059 32 1 -0.9790 -12.0811 0.0037 33 1 -1.4528 -9.6698 0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264207949.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:55 Heat of formation + Delta-G solvation = 29.964003 kcal Electronic energy + Delta-G solvation = -16310.913751 eV Core-core repulsion = 13530.700125 eV Total energy + Delta-G solvation = -2780.213626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.05545 -38.14434 -36.58898 -34.57870 -33.51921 -31.46955 -30.67177 -28.97211 -26.59368 -23.47411 -23.40268 -22.02733 -21.77214 -20.49549 -18.00207 -17.56286 -16.89635 -16.85520 -16.38320 -15.01502 -14.82709 -14.70441 -14.43823 -14.05286 -13.63375 -12.67537 -12.41165 -12.33240 -12.29734 -11.95050 -11.50006 -11.47864 -10.97700 -10.88489 -10.61786 -10.27531 -10.06480 -9.63874 -9.60340 -9.21166 -8.82225 -8.44563 -7.68582 -6.09175 -4.12381 0.84632 1.19768 2.07816 2.62306 3.23262 3.26228 3.34170 3.37911 3.65841 4.38915 4.48407 4.67522 4.91260 5.06717 5.15405 5.27201 5.33034 5.38583 5.51142 5.66948 5.88760 5.96452 6.14644 6.22295 6.28002 6.40733 6.45588 6.55955 6.80577 6.86545 7.31295 7.53377 7.63791 7.88665 7.97065 8.29307 8.94160 9.52532 11.02160 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.072119 B = 0.003299 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.152195 B = 8486.648752 C = 8849.051096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.670 5.670 13 C 0.517 3.483 14 N -0.559 5.559 15 C 0.071 3.929 16 C -0.089 4.089 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.077 4.077 20 C -0.016 4.016 21 O -0.230 6.230 22 H 0.261 0.739 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.431 0.569 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -20.635 -0.001 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.317 5.317 13 C 0.215 3.785 14 N -0.302 5.302 15 C -0.042 4.042 16 C -0.109 4.109 17 C -0.130 4.130 18 C -0.143 4.143 19 C -0.096 4.096 20 C -0.067 4.067 21 O -0.122 6.122 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.273 0.727 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.116 -20.348 0.003 20.379 hybrid contribution -0.009 1.228 -0.001 1.228 sum 1.107 -19.120 0.002 19.152 Atomic orbital electron populations 1.69967 1.06085 1.26708 1.50516 1.25031 0.94873 0.99395 0.95143 0.86507 0.80083 0.83603 0.77646 1.19694 1.20951 1.20955 1.21219 0.93109 0.90796 1.51049 0.92464 1.19036 0.93764 0.90757 0.97741 1.21904 0.99950 0.92423 1.01577 1.21944 0.91643 0.84914 1.02133 1.43927 1.10832 0.97948 1.79000 1.21724 0.77351 0.88992 0.90436 1.71118 1.30035 0.95209 1.33803 1.19724 0.88806 0.94215 1.01479 1.20182 1.00056 0.88641 1.02056 1.20954 0.92083 0.99542 1.00406 1.20833 0.97184 0.93676 1.02566 1.19828 0.96766 0.90753 1.02255 1.20021 0.97550 0.80005 1.09136 1.84432 1.28225 1.22072 1.77463 0.92910 0.96174 0.96168 0.92174 0.92166 0.91409 0.91406 0.72740 0.85098 0.85056 0.84728 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.12 1.86 6.01 -4.04 -0.02 1.83 16 12 N -0.67 -9.81 5.67 -62.42 -0.35 -10.17 16 13 C 0.52 8.35 8.89 -87.65 -0.78 7.58 16 14 N -0.56 -9.22 11.39 -12.13 -0.14 -9.35 16 15 C 0.07 1.06 7.23 -84.69 -0.61 0.45 16 16 C -0.09 -1.04 10.10 -39.26 -0.40 -1.44 16 17 C -0.11 -1.01 10.02 -39.61 -0.40 -1.41 16 18 C -0.12 -1.12 10.03 -39.51 -0.40 -1.51 16 19 C -0.08 -0.88 10.06 -39.55 -0.40 -1.27 16 20 C -0.02 -0.24 7.42 -38.70 -0.29 -0.53 16 21 O -0.23 -3.77 10.43 2.45 0.03 -3.74 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.43 5.56 8.59 -40.82 -0.35 5.21 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -30.97 291.92 -8.45 -39.42 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.12 Total: 0.04 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -3.98 Total: -11.24 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.24 Total: -44.99 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: 0.03 Total: -3.74 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.97 -8.45 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264207949.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.382 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds