Wall clock time and date at job start Sun Mar 29 2020 22:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00174 * 2 1 4 4 H 1.48502 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46886 * 300.00473 * 3 2 1 6 6 H 1.48503 * 109.46812 * 60.00446 * 3 2 1 7 7 C 1.37881 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99406 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47341 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47462 * 180.02562 * 10 9 7 12 12 N 1.46492 * 109.47525 * 179.97438 * 11 10 9 13 13 C 1.38795 * 120.00141 * 179.97438 * 12 11 10 14 14 N 1.32398 * 120.10236 * 0.02562 * 13 12 11 15 15 C 1.32317 * 121.97764 * 179.97438 * 14 13 12 16 16 C 1.36665 * 121.77886 * 0.02835 * 15 14 13 17 17 C 1.39391 * 119.18316 * 359.97351 * 16 15 14 18 18 O 1.34367 * 134.58150 * 180.32320 * 17 16 15 19 19 C 1.34592 * 110.87606 * 180.10911 * 18 17 16 20 20 C 1.34074 * 110.09906 * 359.58251 * 19 18 17 21 21 C 1.39949 * 120.10059 * 180.02562 * 13 12 11 22 22 H 0.97003 * 119.99633 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.46883 * 59.99826 * 9 7 2 24 24 H 1.08997 * 109.46958 * 300.00242 * 9 7 2 25 25 H 1.09001 * 109.47406 * 59.99793 * 10 9 7 26 26 H 1.09005 * 109.47159 * 299.99776 * 10 9 7 27 27 H 1.09001 * 109.47043 * 59.99492 * 11 10 9 28 28 H 1.08997 * 109.46834 * 300.00264 * 11 10 9 29 29 H 0.97001 * 120.00267 * 0.02562 * 12 11 10 30 30 H 1.08008 * 119.11007 * 180.02562 * 15 14 13 31 31 H 1.07993 * 120.40800 * 179.97438 * 16 15 14 32 32 H 1.08002 * 124.95511 * 179.85406 * 19 18 17 33 33 H 1.08001 * 126.91995 * 180.24881 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 7 2.4322 -6.1006 -0.0043 13 6 1.9695 -7.4092 -0.0047 14 7 0.6682 -7.6534 -0.0038 15 6 0.1866 -8.8858 -0.0046 16 6 1.0066 -9.9791 -0.0058 17 6 2.3880 -9.7925 -0.0067 18 8 3.4507 -10.6147 -0.0133 19 6 4.5996 -9.9136 -0.0083 20 6 4.3370 -8.5988 -0.0074 21 6 2.8770 -8.4745 -0.0059 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8726 -3.6048 0.8877 26 1 2.8712 -3.6040 -0.8923 27 1 0.8531 -5.0442 -0.8922 28 1 0.8540 -5.0455 0.8877 29 1 3.3858 -5.9235 -0.0046 30 1 -0.8836 -9.0317 -0.0043 31 1 0.5896 -10.9752 -0.0060 32 1 5.5889 -10.3468 -0.0097 33 1 5.0566 -7.7935 -0.0075 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266190839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:49 Heat of formation + Delta-G solvation = 28.717016 kcal Electronic energy + Delta-G solvation = -16476.829984 eV Core-core repulsion = 13696.562285 eV Total energy + Delta-G solvation = -2780.267700 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.61147 -39.19712 -36.19564 -33.75889 -32.70299 -31.58623 -30.76792 -28.84271 -26.40815 -23.80252 -23.33196 -22.37156 -20.95863 -20.39503 -18.24114 -17.60062 -16.36318 -16.30505 -16.04074 -15.32826 -14.86700 -14.77426 -14.44913 -13.78979 -13.53143 -13.44046 -12.90296 -12.29719 -11.92971 -11.91904 -11.62049 -10.97021 -10.72581 -10.56242 -10.54901 -9.89418 -9.60137 -9.48911 -9.39976 -9.15032 -9.11245 -8.37760 -7.41336 -6.02349 -4.05215 0.97705 1.42932 2.25144 2.63549 3.29624 3.33798 3.37392 3.41228 3.92058 4.32717 4.43945 4.56292 4.78212 5.05057 5.07040 5.33600 5.37150 5.47409 5.70534 5.80105 5.81483 5.96819 6.17966 6.20576 6.28351 6.62129 6.69302 6.94708 6.96717 7.29664 7.49913 7.63586 7.76267 7.96731 8.33028 8.38149 9.01584 9.59008 11.08977 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046632 B = 0.003726 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.296423 B = 7513.720106 C = 8088.266681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.126 3.874 12 N -0.705 5.705 13 C 0.467 3.533 14 N -0.556 5.556 15 C 0.173 3.827 16 C -0.240 4.240 17 C 0.127 3.873 18 O -0.192 6.192 19 C -0.024 4.024 20 C -0.175 4.175 21 C -0.255 4.255 22 H 0.260 0.740 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.407 0.593 30 H 0.164 0.836 31 H 0.135 0.865 32 H 0.207 0.793 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 -20.093 -0.010 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C 0.004 3.996 12 N -0.334 5.334 13 C 0.223 3.777 14 N -0.278 5.278 15 C 0.020 3.980 16 C -0.264 4.264 17 C 0.072 3.928 18 O -0.091 6.091 19 C -0.088 4.088 20 C -0.196 4.196 21 C -0.262 4.262 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.243 0.757 30 H 0.181 0.819 31 H 0.153 0.847 32 H 0.224 0.776 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.536 -19.403 -0.013 20.177 hybrid contribution 1.516 0.462 0.000 1.585 sum 7.052 -18.941 -0.013 20.211 Atomic orbital electron populations 1.69978 1.06045 1.26563 1.50674 1.25030 0.94857 0.99294 0.95280 0.86531 0.80052 0.83770 0.77612 1.19777 1.20987 1.20982 1.21248 0.93022 0.90966 1.50790 0.92645 1.19018 0.93811 0.90774 0.97671 1.21907 0.99851 0.93565 1.00757 1.21637 0.91549 0.84436 1.02017 1.44955 1.09652 1.01974 1.76795 1.17918 0.87781 0.84728 0.87262 1.67456 1.12009 1.24042 1.24283 1.21938 0.99804 0.85552 0.90671 1.20319 0.87621 1.01553 1.16923 1.19562 0.89007 0.87251 0.96973 1.83924 1.13175 1.36416 1.75593 1.23845 0.88733 0.90800 1.05442 1.22332 0.93232 0.97035 1.06957 1.20187 0.94217 0.94015 1.17818 0.92986 0.96240 0.96232 0.92851 0.92856 0.91750 0.91747 0.75723 0.81868 0.84695 0.77637 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.12 -2.43 5.27 -26.74 -0.14 -2.57 16 11 C 0.13 2.24 5.71 -4.05 -0.02 2.21 16 12 N -0.71 -10.77 5.70 -60.26 -0.34 -11.12 16 13 C 0.47 7.27 7.52 -154.92 -1.16 6.11 16 14 N -0.56 -8.81 9.58 -12.54 -0.12 -8.93 16 15 C 0.17 2.17 11.08 -17.91 -0.20 1.98 16 16 C -0.24 -2.85 10.08 -39.72 -0.40 -3.25 16 17 C 0.13 1.70 7.49 -38.27 -0.29 1.42 16 18 O -0.19 -2.31 10.57 4.74 0.05 -2.26 16 19 C -0.02 -0.22 11.97 29.27 0.35 0.13 16 20 C -0.18 -1.90 10.98 -37.71 -0.41 -2.32 16 21 C -0.25 -3.56 6.32 -105.04 -0.66 -4.23 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.41 5.35 8.34 -40.82 -0.34 5.01 16 30 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 291.42 15.07 4.39 4.39 Total: -1.00 -32.39 291.42 -7.91 -40.30 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.11 Total: 0.64 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -3.49 Total: -13.46 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.27 Total: -46.10 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: 0.05 Total: -2.26 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.39 -7.91 -40.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266190839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.017 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds