Wall clock time and date at job start Sun Mar 29 2020 22:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38590 * 120.46804 * 2 1 4 4 C 1.38626 * 118.49362 * 180.02562 * 3 2 1 5 5 C 1.38592 * 119.37193 * 0.02562 * 4 3 2 6 6 N 1.31505 * 120.90450 * 359.72033 * 5 4 3 7 7 C 1.32812 * 121.63299 * 0.56990 * 6 5 4 8 8 C 1.47998 * 119.73128 * 179.71332 * 7 6 5 9 9 O 1.21567 * 119.99759 * 257.09259 * 8 7 6 10 10 N 1.34774 * 120.00679 * 76.81471 * 8 7 6 11 11 C 1.36776 * 120.00550 * 175.63565 * 10 8 7 12 12 H 1.08007 * 120.00368 * 226.41049 * 11 10 8 13 13 C 1.39106 * 120.00261 * 46.40363 * 11 10 8 14 14 N 1.31326 * 120.00069 * 10.74221 * 13 11 10 15 15 Si 1.86800 * 120.00438 * 190.74309 * 13 11 10 16 16 H 1.48498 * 109.47138 * 89.99783 * 15 13 11 17 17 H 1.48497 * 109.47457 * 210.00284 * 15 13 11 18 18 H 1.48498 * 109.46992 * 330.00129 * 15 13 11 19 19 C 1.46508 * 119.99532 * 355.63536 * 10 8 7 20 20 C 1.52995 * 117.49653 * 183.43375 * 19 10 8 21 21 C 1.52996 * 117.50007 * 114.77481 * 19 10 8 22 22 H 1.09009 * 109.47033 * 274.15372 * 1 2 3 23 23 H 1.08996 * 109.47550 * 34.14876 * 1 2 3 24 24 H 1.09004 * 109.47029 * 154.15591 * 1 2 3 25 25 H 1.07996 * 120.75245 * 0.02562 * 3 2 1 26 26 H 1.08004 * 120.31326 * 180.02562 * 4 3 2 27 27 H 1.07993 * 119.54606 * 180.02562 * 5 4 3 28 28 H 0.96995 * 120.00339 * 184.99458 * 14 13 11 29 29 H 1.08996 * 115.55082 * 329.09791 * 19 10 8 30 30 H 1.09004 * 117.50150 * 359.97438 * 20 19 10 31 31 H 1.09003 * 117.49847 * 145.01718 * 20 19 10 32 32 H 1.08997 * 117.49807 * 214.97949 * 21 19 10 33 33 H 1.09003 * 117.49794 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2097 1.1945 0.0000 4 6 3.5951 1.1468 -0.0005 5 6 4.2329 -0.0837 -0.0016 6 7 3.5419 -1.2026 0.0034 7 6 2.2138 -1.2011 -0.0016 8 6 1.4784 -2.4855 -0.0021 9 8 0.9762 -2.8979 -1.0295 10 7 1.3703 -3.2006 1.1352 11 6 0.6162 -4.3416 1.1566 12 1 -0.0802 -4.5137 1.9641 13 6 0.7460 -5.2803 0.1383 14 7 1.7308 -5.1810 -0.7248 15 14 -0.4806 -6.6822 -0.0017 16 1 -1.6121 -6.2653 -0.8683 17 1 0.1879 -7.8674 -0.5964 18 1 -0.9927 -7.0285 1.3485 19 6 2.0605 -2.7559 2.3485 20 6 1.9646 -3.6524 3.5846 21 6 1.1962 -2.3294 3.5368 22 1 -0.3633 0.0744 1.0251 23 1 -0.3634 0.8504 -0.5768 24 1 -0.3633 -0.9249 -0.4480 25 1 1.6898 2.1411 0.0004 26 1 4.1721 2.0598 -0.0001 27 1 5.3121 -0.1242 -0.0016 28 1 1.7802 -5.7917 -1.4767 29 1 2.9952 -2.2189 2.1876 30 1 1.3877 -4.5729 3.4952 31 1 2.8362 -3.7049 4.2371 32 1 1.5626 -1.5119 4.1578 33 1 0.1141 -2.3793 3.4157 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267389883.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:12 Heat of formation + Delta-G solvation = 44.599679 kcal Electronic energy + Delta-G solvation = -18104.506373 eV Core-core repulsion = 15324.927397 eV Total energy + Delta-G solvation = -2779.578976 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.98532 -38.04561 -35.98075 -33.21828 -32.77875 -31.62264 -30.62080 -27.09825 -25.36152 -23.52069 -21.78545 -21.66211 -21.07529 -19.67077 -17.33011 -16.20635 -16.06348 -15.35251 -14.78033 -14.51029 -14.00542 -13.93806 -13.44045 -12.97257 -12.75912 -12.55191 -12.35658 -12.11786 -11.78791 -11.34957 -11.04497 -10.91346 -10.82907 -10.60159 -10.16991 -9.94346 -9.70479 -9.39705 -9.14397 -8.69949 -8.48200 -8.01678 -7.02626 -6.00779 -3.92295 1.42488 1.64480 3.32630 3.37928 3.39818 3.91993 4.16661 4.29392 4.69219 4.75585 5.04155 5.07218 5.19357 5.30464 5.40312 5.50486 5.67068 5.72132 5.82261 5.92450 5.96872 6.00868 6.19004 6.23904 6.39314 6.46356 6.53447 6.64615 6.76822 6.95340 7.07794 7.61965 8.27441 8.44382 9.04815 9.12275 9.61812 10.25410 11.01218 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.008769 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.381249 B = 3192.321325 C = 3531.691491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.111 4.111 3 C -0.084 4.084 4 C -0.180 4.180 5 C 0.086 3.914 6 N -0.456 5.456 7 C 0.130 3.870 8 C 0.532 3.468 9 O -0.511 6.511 10 N -0.410 5.410 11 C -0.345 4.345 12 H 0.081 0.919 13 C 0.065 3.935 14 N -0.816 5.816 15 Si 0.910 3.090 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.077 3.923 20 C -0.171 4.171 21 C -0.209 4.209 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.151 0.849 28 H 0.265 0.735 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 10.845 5.112 12.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.114 4.114 3 C -0.109 4.109 4 C -0.200 4.200 5 C -0.073 4.073 6 N -0.166 5.166 7 C -0.010 4.010 8 C 0.318 3.682 9 O -0.387 6.387 10 N -0.130 5.130 11 C -0.473 4.473 12 H 0.098 0.902 13 C -0.147 4.147 14 N -0.448 5.448 15 Si 0.737 3.263 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.029 4.029 20 C -0.208 4.208 21 C -0.248 4.248 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.169 0.831 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.716 9.657 4.415 10.756 hybrid contribution -0.660 0.287 -0.126 0.731 sum 1.055 9.944 4.289 10.881 Atomic orbital electron populations 1.20783 0.90130 1.03877 1.02369 1.20843 0.97718 0.92810 1.00018 1.21341 0.94118 0.97612 0.97871 1.22115 0.95159 0.99306 1.03457 1.22797 1.00168 0.87827 0.96503 1.67925 1.07589 1.30686 1.10445 1.21972 0.89610 0.95434 0.94029 1.17487 0.83386 0.81876 0.85483 1.90663 1.49201 1.67850 1.30966 1.42473 1.43317 1.20994 1.06212 1.18907 1.20026 0.95624 1.12705 0.90179 1.25377 0.95373 0.97036 0.96919 1.69889 1.27383 1.35712 1.11864 0.86225 0.80880 0.80790 0.78382 1.20388 1.21151 1.19697 1.21712 0.96064 1.01801 0.83335 1.23069 1.02139 0.95568 1.00067 1.23317 0.99344 0.98167 1.03961 0.90988 0.91738 0.89777 0.85145 0.85321 0.83125 0.92485 0.87779 0.87359 0.89792 0.89978 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.70 36.00 0.35 -1.57 16 2 C -0.11 -2.05 5.93 -104.07 -0.62 -2.67 16 3 C -0.08 -1.22 9.87 -39.31 -0.39 -1.61 16 4 C -0.18 -2.47 10.11 -39.31 -0.40 -2.86 16 5 C 0.09 1.40 11.18 -17.56 -0.20 1.20 16 6 N -0.46 -9.79 9.52 -9.81 -0.09 -9.89 16 7 C 0.13 2.92 5.15 -83.02 -0.43 2.49 16 8 C 0.53 14.30 5.31 -12.26 -0.07 14.23 16 9 O -0.51 -15.69 13.95 5.31 0.07 -15.62 16 10 N -0.41 -10.69 2.82 -108.75 -0.31 -11.00 16 11 C -0.35 -9.51 7.88 -15.02 -0.12 -9.63 16 12 H 0.08 2.10 7.33 -52.48 -0.38 1.72 16 13 C 0.06 1.84 4.63 -17.45 -0.08 1.76 16 14 N -0.82 -24.94 11.22 55.50 0.62 -24.31 16 15 Si 0.91 21.76 29.57 -169.99 -5.03 16.73 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.08 1.68 5.85 -67.93 -0.40 1.28 16 20 C -0.17 -3.25 9.81 -26.70 -0.26 -3.51 16 21 C -0.21 -3.75 10.36 -26.70 -0.28 -4.03 16 22 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 23 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 24 H 0.08 1.70 6.54 -51.93 -0.34 1.36 16 25 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 27 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 28 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 29 H 0.10 2.26 6.80 -51.93 -0.35 1.90 16 30 H 0.11 2.21 6.78 -51.93 -0.35 1.86 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 284.80 15.07 4.29 4.29 Total: -1.00 -34.09 284.80 -7.26 -41.35 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.95 Total: 3.35 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.88 Total: -4.91 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.22 Total: -45.20 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.07 Total: -15.62 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.09 -7.26 -41.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267389883.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.954 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds