Wall clock time and date at job start Sun Mar 29 2020 22:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00359 * 2 1 4 4 H 1.48497 * 109.46839 * 239.99804 * 3 2 1 5 5 H 1.48496 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47350 * 119.99933 * 3 2 1 7 7 C 1.38951 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00440 * 198.20679 * 7 2 1 9 9 N 1.37096 * 120.00144 * 18.21688 * 7 2 1 10 10 C 1.34781 * 120.00129 * 44.27650 * 9 7 2 11 11 O 1.21292 * 119.99956 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00075 * 179.73052 * 10 9 7 13 13 C 1.50699 * 109.46865 * 180.02562 * 12 10 9 14 14 C 1.38650 * 120.78321 * 269.71555 * 13 12 10 15 15 C 1.38209 * 119.15983 * 179.80065 * 14 13 12 16 16 N 1.31871 * 120.76245 * 0.49172 * 15 14 13 17 17 C 1.31872 * 121.72516 * 359.73455 * 16 15 14 18 18 C 1.38205 * 120.76683 * 0.02672 * 17 16 15 19 19 C 1.46502 * 120.00203 * 224.28571 * 9 7 2 20 20 C 1.53001 * 117.49775 * 3.21996 * 19 9 7 21 21 C 1.52996 * 59.99902 * 252.51149 * 20 19 9 22 22 H 0.96996 * 119.99308 * 354.92520 * 1 2 3 23 23 H 1.09004 * 109.46645 * 300.00093 * 12 10 9 24 24 H 1.08996 * 109.46953 * 59.99895 * 12 10 9 25 25 H 1.08003 * 120.42281 * 0.02562 * 14 13 12 26 26 H 1.07997 * 119.61812 * 180.20533 * 15 14 13 27 27 H 1.07997 * 119.61412 * 180.02562 * 17 16 15 28 28 H 1.07995 * 120.41639 * 179.97438 * 18 17 16 29 29 H 1.09004 * 115.55260 * 148.92889 * 19 9 7 30 30 H 1.08999 * 117.49513 * 0.02562 * 20 19 9 31 31 H 1.08997 * 117.49982 * 145.01664 * 20 19 9 32 32 H 1.08996 * 117.49863 * 252.50654 * 21 20 19 33 33 H 1.09003 * 117.51783 * 107.48342 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0483 -1.2268 0.2928 9 7 1.3749 -2.3611 -0.3701 10 6 0.5782 -2.3749 -1.4572 11 8 0.4226 -1.3632 -2.1079 12 6 -0.1138 -3.6490 -1.8681 13 6 -0.9370 -3.3970 -3.1051 14 6 -2.2606 -2.9960 -3.0071 15 6 -2.9832 -2.7703 -4.1634 16 7 -2.4305 -2.9415 -5.3484 17 6 -1.1761 -3.3264 -5.4794 18 6 -0.3904 -3.5663 -4.3680 19 6 1.5631 -3.5832 0.4156 20 6 2.4182 -3.4851 1.6805 21 6 2.9641 -4.1976 0.4414 22 1 -0.4849 0.8368 0.0743 23 1 0.6318 -4.4159 -2.0782 24 1 -0.7641 -3.9858 -1.0609 25 1 -2.7201 -2.8582 -2.0394 26 1 -4.0138 -2.4545 -4.0957 27 1 -0.7578 -3.4557 -6.4667 28 1 0.6361 -3.8818 -4.4818 29 1 0.7137 -4.2661 0.4336 30 1 2.8404 -2.5112 1.9283 31 1 2.1314 -4.1033 2.5311 32 1 3.0364 -5.2846 0.4769 33 1 3.7456 -3.6927 -0.1264 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272384202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:11 Heat of formation + Delta-G solvation = 39.328441 kcal Electronic energy + Delta-G solvation = -17624.958151 eV Core-core repulsion = 14845.150597 eV Total energy + Delta-G solvation = -2779.807554 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80785 -38.46289 -36.14363 -33.46691 -32.57474 -30.95362 -30.78869 -28.07521 -24.81802 -23.04516 -22.10136 -21.69037 -21.12478 -19.26045 -16.53006 -16.18461 -16.02218 -15.93056 -15.20952 -14.71052 -14.33294 -13.85030 -13.62489 -13.34953 -13.13216 -12.76039 -12.24860 -11.82264 -11.59472 -11.16747 -11.04296 -10.93222 -10.85057 -10.52198 -10.22867 -10.01386 -9.78654 -9.19669 -9.11821 -8.73122 -8.70615 -8.03909 -7.06301 -6.14104 -3.89667 1.56244 1.70513 3.28314 3.36021 3.39161 4.06195 4.16604 4.29196 4.72282 4.79789 4.83369 5.12887 5.15965 5.27921 5.52100 5.55614 5.57615 5.65124 5.72546 5.87168 5.93034 6.07188 6.12344 6.18211 6.21288 6.35911 6.47257 6.70331 6.83048 6.89528 7.11697 7.58960 8.24139 8.33389 9.02732 9.12237 9.62706 10.25092 10.95039 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.008144 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.305401 B = 3437.142914 C = 4307.850624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.350 4.350 8 H 0.077 0.923 9 N -0.428 5.428 10 C 0.487 3.513 11 O -0.525 6.525 12 C -0.105 4.105 13 C 0.002 3.998 14 C -0.155 4.155 15 C 0.092 3.908 16 N -0.498 5.498 17 C 0.091 3.909 18 C -0.162 4.162 19 C 0.073 3.927 20 C -0.173 4.173 21 C -0.208 4.208 22 H 0.265 0.735 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.131 0.869 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -9.335 -1.741 9.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.477 4.477 8 H 0.094 0.906 9 N -0.149 5.149 10 C 0.274 3.726 11 O -0.402 6.402 12 C -0.145 4.145 13 C -0.007 4.007 14 C -0.175 4.175 15 C -0.064 4.064 16 N -0.208 5.208 17 C -0.066 4.066 18 C -0.182 4.182 19 C -0.033 4.033 20 C -0.211 4.211 21 C -0.247 4.247 22 H 0.075 0.925 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.149 0.851 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.147 0.853 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.461 -8.501 -2.906 9.102 hybrid contribution 0.924 0.659 1.045 1.543 sum -0.537 -7.842 -1.860 8.077 Atomic orbital electron populations 1.69801 1.06541 1.27539 1.42708 1.25233 0.94836 0.99369 0.94211 0.86273 0.79316 0.81954 0.78471 1.19967 1.21181 1.20345 1.18789 0.94461 0.83812 1.50613 0.90556 1.42744 1.44175 1.06837 1.21157 1.19512 0.83140 0.88311 0.81649 1.90564 1.62124 1.34402 1.53106 1.20792 0.98950 0.99604 0.95160 1.19870 0.93432 0.92753 0.94597 1.21991 0.94957 1.00340 1.00220 1.22586 0.99852 0.96308 0.87648 1.67579 1.12821 1.12912 1.27473 1.22565 0.89837 0.95682 0.98491 1.21941 1.00894 1.02396 0.92981 1.21717 0.92551 0.91614 0.97435 1.23056 1.04454 1.02501 0.91067 1.23318 0.99751 0.98494 1.03139 0.92542 0.89370 0.89421 0.85120 0.83290 0.83344 0.85314 0.88022 0.87478 0.89789 0.89772 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.46 11.74 55.50 0.65 -23.81 16 2 C 0.07 2.08 4.39 -17.47 -0.08 2.00 16 3 Si 0.91 21.98 29.59 -169.99 -5.03 16.95 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.35 -9.42 7.92 -14.93 -0.12 -9.54 16 8 H 0.08 1.99 7.26 -52.48 -0.38 1.61 16 9 N -0.43 -10.42 2.83 -107.72 -0.31 -10.73 16 10 C 0.49 11.99 6.96 -10.98 -0.08 11.92 16 11 O -0.53 -15.28 13.80 5.55 0.08 -15.20 16 12 C -0.10 -1.94 4.51 -29.03 -0.13 -2.07 16 13 C 0.00 0.04 4.41 -104.32 -0.46 -0.42 16 14 C -0.16 -2.74 9.82 -39.44 -0.39 -3.13 16 15 C 0.09 1.53 11.18 -17.55 -0.20 1.34 16 16 N -0.50 -8.66 10.36 -13.25 -0.14 -8.79 16 17 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 18 C -0.16 -2.73 9.82 -39.44 -0.39 -3.12 16 19 C 0.07 1.40 5.87 -67.93 -0.40 1.00 16 20 C -0.17 -3.02 9.80 -26.73 -0.26 -3.28 16 21 C -0.21 -3.40 10.36 -26.73 -0.28 -3.68 16 22 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 23 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 24 H 0.09 1.48 7.52 -51.93 -0.39 1.08 16 25 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 26 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 27 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 28 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.10 1.71 6.96 -51.93 -0.36 1.35 16 30 H 0.11 2.09 6.72 -51.93 -0.35 1.74 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -33.42 287.35 -7.38 -40.80 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.00 Total: 4.17 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.97 Total: -7.72 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.21 Total: -43.33 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.08 Total: -15.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.42 -7.38 -40.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272384202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.129 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds