Wall clock time and date at job start Sun Mar 29 2020 22:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47102 * 239.99702 * 3 2 1 5 5 H 1.48506 * 109.47051 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47384 * 119.99413 * 3 2 1 7 7 C 1.40044 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00398 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00212 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99851 * 5.64992 * 9 7 2 11 11 N 1.34771 * 120.00293 * 185.65488 * 9 7 2 12 12 C 1.46504 * 120.00077 * 356.93521 * 11 9 7 13 13 C 1.50695 * 109.47230 * 89.99720 * 12 11 9 14 14 C 1.38668 * 120.41643 * 90.00474 * 13 12 11 15 15 C 1.38632 * 118.41870 * 179.72668 * 14 13 12 16 16 C 1.38224 * 119.16197 * 359.97438 * 15 14 13 17 17 N 1.31849 * 120.76601 * 0.02562 * 16 15 14 18 18 C 1.31890 * 121.72580 * 0.02562 * 17 16 15 19 19 C 1.46497 * 120.00203 * 176.93253 * 11 9 7 20 20 C 1.53001 * 117.50024 * 17.04888 * 19 11 9 21 21 C 1.53007 * 117.49851 * 308.38988 * 19 11 9 22 22 H 0.97001 * 120.00024 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46625 * 329.99635 * 12 11 9 24 24 H 1.08996 * 109.46925 * 209.99982 * 12 11 9 25 25 H 1.08003 * 120.79398 * 359.70079 * 14 13 12 26 26 H 1.08004 * 120.41893 * 180.02562 * 15 14 13 27 27 H 1.08004 * 119.61486 * 179.97438 * 16 15 14 28 28 H 1.07996 * 119.62157 * 180.02562 * 18 17 16 29 29 H 1.08997 * 115.55501 * 162.72629 * 19 11 9 30 30 H 1.09004 * 117.49653 * 0.02562 * 20 19 11 31 31 H 1.09000 * 117.49893 * 145.02079 * 20 19 11 32 32 H 1.08992 * 117.50020 * 214.98054 * 21 19 11 33 33 H 1.08996 * 117.49601 * 359.97438 * 21 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6965 1.2126 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0627 -2.4831 -0.1037 11 7 1.9440 -3.6448 0.1161 12 6 3.4079 -3.6460 0.1741 13 6 3.8538 -3.5381 1.6095 14 6 4.0571 -4.6801 2.3692 15 6 4.4728 -4.5328 3.6835 16 6 4.6700 -3.2616 4.1891 17 7 4.4669 -2.1977 3.4373 18 6 4.0704 -2.2999 2.1836 19 6 1.2073 -4.9092 0.1837 20 6 -0.2527 -4.9016 -0.2739 21 6 0.0824 -5.0172 1.2152 22 1 -0.4850 0.8400 -0.0004 23 1 3.7945 -2.7981 -0.3913 24 1 3.7877 -4.5728 -0.2557 25 1 3.8950 -5.6610 1.9473 26 1 4.6413 -5.4005 4.3043 27 1 4.9935 -3.1384 5.2122 28 1 3.9147 -1.4057 1.5984 29 1 1.7931 -5.8061 -0.0176 30 1 -0.6649 -3.9559 -0.6258 31 1 -0.6274 -5.7936 -0.7761 32 1 -0.0720 -5.9850 1.6921 33 1 -0.1092 -4.1475 1.8437 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274585447.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:13 Heat of formation + Delta-G solvation = 43.352150 kcal Electronic energy + Delta-G solvation = -17924.264907 eV Core-core repulsion = 15144.631834 eV Total energy + Delta-G solvation = -2779.633073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82056 -38.40011 -34.93349 -34.10589 -32.47918 -31.80354 -30.41854 -26.51409 -25.54710 -23.13974 -22.08147 -21.58346 -21.49213 -18.91848 -16.81441 -16.56418 -16.02939 -15.54866 -15.15875 -14.78947 -14.14093 -13.74316 -13.30148 -13.22420 -12.77840 -12.67016 -12.17326 -11.92829 -11.65953 -11.31075 -11.18659 -11.01644 -10.55371 -10.36862 -10.16075 -10.06728 -9.58125 -9.39509 -9.01438 -8.88547 -8.56939 -7.38365 -7.12225 -6.23140 -4.73018 1.52121 1.68079 3.13510 3.19146 3.20170 3.99058 4.16428 4.41551 4.54428 4.77314 4.89970 5.10470 5.28024 5.35130 5.44770 5.61794 5.69977 5.70210 5.82746 5.91709 6.12605 6.21440 6.29357 6.31661 6.43556 6.45625 6.70934 6.90649 7.14064 7.34221 7.43256 7.53463 8.11020 8.25280 8.42030 8.94390 9.31935 10.49875 10.68276 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.011259 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.366308 B = 2486.265139 C = 3795.165034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.091 3.909 3 Si 0.898 3.102 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.561 3.439 10 O -0.562 6.562 11 N -0.610 5.610 12 C 0.172 3.828 13 C -0.139 4.139 14 C -0.068 4.068 15 C -0.185 4.185 16 C 0.085 3.915 17 N -0.490 5.490 18 C 0.123 3.877 19 C 0.086 3.914 20 C -0.201 4.201 21 C -0.199 4.199 22 H 0.270 0.730 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.146 0.854 28 H 0.169 0.831 29 H 0.102 0.898 30 H 0.155 0.845 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.366 -7.651 3.037 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.130 4.130 3 Si 0.723 3.277 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.091 0.909 9 C 0.368 3.632 10 O -0.445 6.445 11 N -0.344 5.344 12 C 0.046 3.954 13 C -0.143 4.143 14 C -0.095 4.095 15 C -0.205 4.205 16 C -0.073 4.073 17 N -0.199 5.199 18 C -0.034 4.034 19 C -0.020 4.020 20 C -0.238 4.238 21 C -0.238 4.238 22 H 0.081 0.919 23 H 0.111 0.889 24 H 0.083 0.917 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.164 0.836 28 H 0.186 0.814 29 H 0.119 0.881 30 H 0.172 0.828 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.657 -6.691 3.309 10.693 hybrid contribution 0.317 -0.293 -0.056 0.435 sum 7.974 -6.984 3.252 11.087 Atomic orbital electron populations 1.69973 1.07043 1.27590 1.34509 1.25679 0.94614 1.00203 0.92479 0.86558 0.80119 0.81283 0.79782 1.19100 1.20481 1.18762 1.20947 0.93408 0.89161 1.54414 0.90925 1.18247 0.86881 0.81930 0.76147 1.90334 1.14244 1.85095 1.54868 1.47526 1.03696 1.05137 1.78002 1.20077 0.82573 1.02332 0.90372 1.21577 0.98950 0.94113 0.99664 1.21408 0.95750 0.98567 0.93781 1.21990 1.03213 0.98775 0.96485 1.22658 0.96840 0.88402 0.99357 1.67748 1.12098 1.33543 1.06480 1.23206 0.91610 0.97952 0.90627 1.21247 0.88539 0.88186 1.04043 1.24186 0.97855 1.05380 0.96414 1.23126 1.06012 1.01189 0.93457 0.91914 0.88897 0.91739 0.85666 0.85646 0.83650 0.81446 0.88075 0.82761 0.91570 0.90639 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.94 11.84 55.55 0.66 -21.28 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 3 Si 0.90 19.43 29.56 -169.99 -5.02 14.41 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.54 -14.16 7.72 -35.63 -0.28 -14.43 16 8 H 0.07 1.70 4.26 -52.49 -0.22 1.47 16 9 C 0.56 14.94 7.37 -12.99 -0.10 14.84 16 10 O -0.56 -16.80 10.90 5.20 0.06 -16.74 16 11 N -0.61 -13.19 2.82 -169.12 -0.48 -13.67 16 12 C 0.17 3.02 5.38 -5.19 -0.03 2.99 16 13 C -0.14 -2.41 5.48 -104.48 -0.57 -2.99 16 14 C -0.07 -1.01 9.86 -39.28 -0.39 -1.40 16 15 C -0.18 -2.53 10.11 -39.44 -0.40 -2.92 16 16 C 0.08 1.28 11.18 -17.55 -0.20 1.08 16 17 N -0.49 -9.07 10.36 -13.25 -0.14 -9.20 16 18 C 0.12 2.34 10.41 -17.55 -0.18 2.16 16 19 C 0.09 1.67 6.62 -67.93 -0.45 1.23 16 20 C -0.20 -4.16 9.64 -26.69 -0.26 -4.42 16 21 C -0.20 -3.98 9.90 -26.69 -0.26 -4.24 16 22 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 23 H 0.09 1.65 6.11 -51.93 -0.32 1.34 16 24 H 0.06 0.93 7.99 -51.93 -0.41 0.51 16 25 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 26 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 27 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.17 3.37 5.59 -52.49 -0.29 3.08 16 29 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 30 H 0.16 3.91 4.97 -53.36 -0.27 3.64 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.09 2.16 7.81 -51.93 -0.41 1.76 16 LS Contribution 279.55 15.07 4.21 4.21 Total: -1.00 -31.79 279.55 -7.50 -39.29 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.59 Total: 8.77 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.20 Total: -5.79 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.04 Total: -44.15 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.06 Total: -16.74 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.79 -7.50 -39.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274585447.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.644 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds